Wall clock time and date at job start Wed Apr 1 2020 03:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.51584 * 135.78324 * 2 1 4 4 C 1.53837 * 86.75572 * 154.84349 * 3 2 1 5 5 C 1.52998 * 113.65619 * 270.21855 * 4 3 2 6 6 C 1.50699 * 113.65917 * 139.27084 * 4 3 2 7 7 O 1.21285 * 119.99918 * 8.33364 * 6 4 3 8 8 N 1.34772 * 120.00358 * 188.33459 * 6 4 3 9 9 C 1.48147 * 127.84039 * 175.58750 * 8 6 4 10 10 C 1.54394 * 104.61760 * 219.56863 * 9 8 6 11 11 H 1.08999 * 110.43423 * 95.04944 * 10 9 8 12 12 C 1.50700 * 110.33776 * 217.26111 * 10 9 8 13 13 C 1.34677 * 126.59180 * 80.70861 * 12 10 9 14 14 N 1.34123 * 108.02030 * 180.28072 * 13 12 10 15 15 C 1.30502 * 109.25622 * 359.72288 * 14 13 12 16 16 N 1.35046 * 108.70010 * 0.02562 * 15 14 13 17 17 C 1.46503 * 126.39801 * 179.97438 * 16 15 14 18 18 C 1.54284 * 104.95816 * 336.13019 * 10 9 8 19 19 H 1.09001 * 110.34344 * 241.13260 * 18 10 9 20 20 N 1.46497 * 110.34094 * 118.97949 * 18 10 9 21 21 C 1.36939 * 119.99962 * 154.99955 * 20 18 10 22 22 H 1.08004 * 120.00097 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00167 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99734 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00241 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47143 * 59.99650 * 25 23 21 27 27 H 1.48495 * 109.47127 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46693 * 299.99794 * 25 23 21 29 29 C 1.48150 * 127.83756 * 355.56677 * 8 6 4 30 30 C 1.51581 * 135.78066 * 179.97438 * 2 1 3 31 31 H 1.08001 * 120.00288 * 0.02562 * 1 2 3 32 32 H 1.08005 * 120.00120 * 180.02562 * 1 2 3 33 33 H 1.08994 * 113.66357 * 40.37503 * 3 2 1 34 34 H 1.08995 * 113.74762 * 269.32188 * 3 2 1 35 35 H 1.09003 * 109.47454 * 282.35142 * 5 4 3 36 36 H 1.08995 * 109.47326 * 42.35660 * 5 4 3 37 37 H 1.09005 * 109.47148 * 162.35479 * 5 4 3 38 38 H 1.08996 * 110.40569 * 100.78028 * 9 8 6 39 39 H 1.09001 * 110.40548 * 338.34632 * 9 8 6 40 40 H 1.07993 * 125.98819 * 359.96630 * 13 12 10 41 41 H 1.08001 * 125.64939 * 179.97438 * 15 14 13 42 42 H 1.08994 * 109.46677 * 90.02378 * 17 16 15 43 43 H 1.09001 * 109.47021 * 210.02482 * 17 16 15 44 44 H 1.09008 * 109.46988 * 330.02484 * 17 16 15 45 45 H 0.96995 * 120.00421 * 334.99787 * 20 18 10 46 46 H 0.97005 * 120.00042 * 180.02562 * 24 23 21 47 47 H 1.09001 * 110.40583 * 21.64650 * 29 8 6 48 48 H 1.09002 * 110.50371 * 259.27026 * 29 8 6 49 49 H 1.08997 * 113.66850 * 90.69012 * 30 2 1 50 50 H 1.09004 * 113.66431 * 319.61768 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2460 0.0016 2.1818 6 6 4.7129 -0.0001 0.1195 7 8 5.0773 0.8802 -0.6310 8 7 5.5685 -0.9783 0.4764 9 6 6.9510 -1.1982 -0.0086 10 6 7.0718 -2.7299 -0.1597 11 1 6.8602 -3.0289 -1.1863 12 6 8.4488 -3.1892 0.2455 13 6 8.8893 -3.3946 1.5015 14 7 10.1686 -3.7916 1.4328 15 6 10.5358 -3.8457 0.1817 16 7 9.4912 -3.4806 -0.5924 17 6 9.4779 -3.4046 -2.0553 18 6 6.0097 -3.3096 0.7976 19 1 6.4839 -3.9265 1.5609 20 7 5.0242 -4.0941 0.0497 21 6 4.3226 -5.0890 0.6768 22 1 4.4956 -5.2950 1.7228 23 6 3.3891 -5.8328 -0.0319 24 7 3.1779 -5.5814 -1.3065 25 14 2.4316 -7.1895 0.8236 26 1 1.6516 -6.6119 1.9475 27 1 1.5046 -7.8277 -0.1451 28 1 3.3771 -8.2070 1.3488 29 6 5.3401 -2.0774 1.4432 30 6 2.3963 -1.0571 0.0005 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 2.1795 1.9073 0.6467 34 1 2.7192 1.3547 -0.9976 35 1 3.8403 0.8303 2.5669 36 1 2.2117 0.1146 2.5064 37 1 3.6452 -0.9390 2.5614 38 1 7.6726 -0.8300 0.7206 39 1 7.0984 -0.7086 -0.9712 40 1 8.3149 -3.2581 2.4058 41 1 11.5135 -4.1339 -0.1754 42 1 9.1675 -4.3652 -2.4662 43 1 8.7790 -2.6307 -2.3727 44 1 10.4776 -3.1613 -2.4156 45 1 4.8685 -3.9089 -0.8895 46 1 2.5253 -6.1009 -1.8017 47 1 4.2722 -2.2510 1.5759 48 1 5.8088 -1.8478 2.4001 49 1 2.7183 -1.3541 -0.9976 50 1 2.1795 -1.9070 0.6477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070687899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:03 Heat of formation + Delta-G solvation = 81.011370 kcal Electronic energy + Delta-G solvation = -31634.542710 eV Core-core repulsion = 27664.238988 eV Total energy + Delta-G solvation = -3970.303723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.07809 -41.74466 -39.69213 -38.35733 -35.74309 -34.90235 -33.77994 -32.59241 -32.04693 -29.14891 -29.10137 -28.42633 -27.77251 -26.87944 -26.27143 -25.05920 -22.94550 -22.72411 -21.67588 -20.60370 -19.81399 -19.07970 -18.71663 -17.97891 -17.83057 -17.02075 -16.76276 -16.57840 -16.44035 -15.90279 -15.65420 -15.30870 -15.22308 -15.17751 -14.76629 -14.61975 -14.44248 -14.27682 -13.87384 -13.70814 -13.53408 -13.34764 -13.32681 -13.24867 -13.04364 -12.92190 -12.78366 -12.56705 -12.44128 -12.26247 -12.19798 -11.96195 -11.77898 -11.71217 -11.14885 -11.00506 -10.88258 -10.72188 -10.44721 -10.02815 -9.83061 -9.30408 -8.89001 -7.90181 -5.18176 1.09535 1.28216 1.50539 1.51353 1.56571 1.57474 1.88632 2.04720 2.24682 2.58198 3.33068 3.36061 3.39909 3.52127 3.58853 3.66719 3.78253 3.92687 3.93729 3.98957 4.01381 4.09297 4.22264 4.35378 4.40305 4.42779 4.51199 4.59004 4.66306 4.68046 4.70354 4.75896 4.76371 4.82538 4.85805 4.88270 4.95440 4.97430 5.02776 5.09719 5.20750 5.26593 5.40479 5.46340 5.55432 5.59235 5.80638 5.99858 6.29111 6.36088 6.54699 7.10030 7.16126 7.37743 8.08582 8.32878 9.32044 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007568 B = 0.004987 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.080155 B = 5613.670181 C = 8275.642705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.160 4.160 3 C -0.072 4.072 4 C -0.094 4.094 5 C -0.125 4.125 6 C 0.549 3.451 7 O -0.586 6.586 8 N -0.608 5.608 9 C 0.124 3.876 10 C -0.020 4.020 11 H 0.073 0.927 12 C -0.011 4.011 13 C -0.036 4.036 14 N -0.530 5.530 15 C 0.181 3.819 16 N -0.460 5.460 17 C 0.065 3.935 18 C 0.175 3.825 19 H 0.077 0.923 20 N -0.719 5.719 21 C -0.232 4.232 22 H 0.080 0.920 23 C -0.063 4.063 24 N -0.963 5.963 25 Si 0.958 3.042 26 H -0.276 1.276 27 H -0.303 1.303 28 H -0.283 1.283 29 C 0.078 3.922 30 C -0.081 4.081 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.172 0.828 41 H 0.241 0.759 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.370 0.630 46 H 0.247 0.753 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.064 0.936 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 10.352 3.005 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.109 4.109 4 C -0.097 4.097 5 C -0.182 4.182 6 C 0.339 3.661 7 O -0.467 6.467 8 N -0.339 5.339 9 C 0.001 3.999 10 C -0.042 4.042 11 H 0.091 0.909 12 C -0.127 4.127 13 C -0.183 4.183 14 N -0.249 5.249 15 C -0.100 4.100 16 N -0.142 5.142 17 C -0.076 4.076 18 C 0.064 3.936 19 H 0.095 0.905 20 N -0.358 5.358 21 C -0.364 4.364 22 H 0.098 0.902 23 C -0.256 4.256 24 N -0.614 5.614 25 Si 0.789 3.211 26 H -0.202 1.202 27 H -0.230 1.230 28 H -0.210 1.210 29 C -0.047 4.047 30 C -0.119 4.119 31 H 0.147 0.853 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.189 0.811 41 H 0.257 0.743 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.140 0.860 45 H 0.203 0.797 46 H 0.056 0.944 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.083 0.917 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.189 10.565 3.225 13.179 hybrid contribution -1.145 -1.004 -1.155 1.911 sum 6.044 9.561 2.071 11.499 Atomic orbital electron populations 1.23118 0.92843 1.03223 1.00247 1.22780 0.94254 0.97024 1.01923 1.22103 0.91815 0.95773 1.01203 1.21926 0.89163 0.99888 0.98697 1.21706 1.03838 1.03357 0.89299 1.20373 0.86596 0.79451 0.79667 1.90619 1.78808 1.38069 1.39246 1.48861 1.14224 1.27663 1.43126 1.22267 0.83533 0.93628 1.00466 1.20559 0.88988 0.94371 1.00286 0.90891 1.20849 0.91025 1.09668 0.91190 1.22159 0.92671 1.06930 0.96545 1.70237 1.13374 1.20964 1.20302 1.25608 0.95392 1.03429 0.85614 1.45472 1.10516 1.49393 1.08795 1.22289 1.06377 1.04024 0.74925 1.21351 0.88084 0.91096 0.93066 0.90517 1.42507 1.44641 1.38537 1.10066 1.19514 1.13883 1.08302 0.94693 0.90201 1.25338 1.01663 1.02245 0.96379 1.69793 1.38656 1.44241 1.08693 0.85439 0.78452 0.79918 0.77323 1.20176 1.22955 1.20996 1.23593 1.02918 0.86117 0.92052 1.22057 0.93948 0.95883 0.99975 0.85266 0.87517 0.88569 0.89761 0.91055 0.90195 0.90892 0.89592 0.91109 0.81059 0.74329 0.90416 0.89956 0.85966 0.79748 0.94373 0.89744 0.88881 0.91711 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 14.71 67.79 1.00 -2.66 16 2 C -0.16 -4.38 6.58 -15.98 -0.11 -4.49 16 3 C -0.07 -1.94 6.92 30.41 0.21 -1.73 16 4 C -0.09 -2.74 0.73 -52.42 -0.04 -2.78 16 5 C -0.13 -2.93 8.65 71.98 0.62 -2.31 16 6 C 0.55 18.67 6.97 87.66 0.61 19.28 16 7 O -0.59 -23.19 16.28 -3.05 -0.05 -23.24 16 8 N -0.61 -18.95 3.32 -807.94 -2.68 -21.63 16 9 C 0.12 3.57 6.57 86.54 0.57 4.14 16 10 C -0.02 -0.62 2.98 -10.63 -0.03 -0.65 16 11 H 0.07 2.46 7.13 -2.39 -0.02 2.44 16 12 C -0.01 -0.33 5.76 40.95 0.24 -0.09 16 13 C -0.04 -1.05 10.67 83.53 0.89 -0.16 16 14 N -0.53 -15.78 11.25 -200.31 -2.25 -18.03 16 15 C 0.18 4.19 12.56 180.26 2.26 6.46 16 16 N -0.46 -10.90 3.15 -537.86 -1.70 -12.60 16 17 C 0.07 1.07 10.84 127.77 1.39 2.46 16 18 C 0.17 6.00 3.20 45.90 0.15 6.15 16 19 H 0.08 2.67 6.45 -2.39 -0.02 2.66 16 20 N -0.72 -32.14 5.12 -318.66 -1.63 -33.77 16 21 C -0.23 -11.62 9.96 84.03 0.84 -10.78 16 22 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 23 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 24 N -0.96 -55.60 13.06 21.65 0.28 -55.32 16 25 Si 0.96 43.89 29.55 68.60 2.03 45.91 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 29 C 0.08 2.35 5.32 86.53 0.46 2.81 16 30 C -0.08 -2.69 6.68 30.41 0.20 -2.48 16 31 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.11 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 34 H 0.08 2.56 7.54 -2.39 -0.02 2.54 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.68 7.70 -2.39 -0.02 1.66 16 37 H 0.07 1.73 5.28 -2.38 -0.01 1.71 16 38 H 0.09 2.25 7.85 -2.39 -0.02 2.24 16 39 H 0.07 2.12 7.92 -2.39 -0.02 2.10 16 40 H 0.17 4.65 7.57 -2.91 -0.02 4.63 16 41 H 0.24 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.42 7.64 -2.39 -0.02 1.40 16 44 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.37 18.55 7.55 -92.71 -0.70 17.85 16 46 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 47 H 0.08 2.80 5.25 -2.39 -0.01 2.79 16 48 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.06 2.52 8.09 -2.39 -0.02 2.50 16 50 H 0.07 2.58 7.89 -2.38 -0.02 2.56 16 Total: -1.00 -68.97 402.50 3.98 -64.99 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: 0.25 Total: 43.46 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 9.73 Total: 10.23 kcal Atomic # 7 Polarization: -133.37 SS G_CDS: -7.98 Total: -141.35 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.97 3.98 -64.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070687899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.004 kcal (2) G-P(sol) polarization free energy of solvation -68.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds