Wall clock time and date at job start Wed Apr 1 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99720 * 2 1 4 4 H 1.48500 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47172 * 299.99551 * 3 2 1 6 6 H 1.48500 * 109.46850 * 59.99675 * 3 2 1 7 7 C 1.38807 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00429 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.46382 * 125.49488 * 180.31762 * 9 7 2 11 11 C 1.53747 * 108.45308 * 181.42271 * 10 9 7 12 12 H 1.09006 * 113.83580 * 250.87598 * 11 10 9 13 13 C 1.55169 * 108.31409 * 123.93900 * 11 10 9 14 14 C 1.54866 * 101.73331 * 285.38802 * 13 11 10 15 15 N 1.47400 * 104.81733 * 322.76889 * 14 13 11 16 16 C 1.34777 * 125.58773 * 204.40730 * 15 14 13 17 17 O 1.21633 * 119.99916 * 174.18655 * 16 15 14 18 18 C 1.47154 * 120.00194 * 354.18104 * 16 15 14 19 19 C 1.38407 * 126.88112 * 353.82858 * 18 16 15 20 20 C 1.39678 * 105.35987 * 179.97438 * 19 18 16 21 21 N 1.30865 * 107.86081 * 359.97438 * 20 19 18 22 22 N 1.28444 * 110.92536 * 0.02562 * 21 20 19 23 23 C 1.46501 * 125.18732 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.47566 * 277.12571 * 23 22 21 25 25 C 1.53778 * 113.61407 * 272.60904 * 24 23 22 26 26 C 1.53779 * 87.07874 * 220.01422 * 25 24 23 27 27 C 1.53781 * 113.61684 * 175.10561 * 24 23 22 28 28 C 1.46716 * 108.82501 * 24.66389 * 15 14 13 29 29 H 1.08999 * 111.53080 * 235.84120 * 28 15 14 30 30 C 1.46713 * 125.30794 * 359.97438 * 9 7 2 31 31 H 0.97001 * 120.00167 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.93199 * 61.43304 * 10 9 7 33 33 H 1.08997 * 109.21248 * 300.99486 * 10 9 7 34 34 H 1.08999 * 110.97869 * 167.27132 * 13 11 10 35 35 H 1.08999 * 111.00304 * 43.50663 * 13 11 10 36 36 H 1.09004 * 110.36418 * 203.93199 * 14 13 11 37 37 H 1.08998 * 110.37260 * 81.60664 * 14 13 11 38 38 H 1.07999 * 127.32244 * 359.97438 * 19 18 16 39 39 H 1.07995 * 126.07297 * 179.73858 * 20 19 18 40 40 H 1.08997 * 109.47328 * 37.13133 * 23 22 21 41 41 H 1.09007 * 109.47215 * 157.12741 * 23 22 21 42 42 H 1.09004 * 112.84450 * 43.90921 * 24 23 22 43 43 H 1.09000 * 113.61846 * 334.55960 * 25 24 23 44 44 H 1.08996 * 113.61779 * 105.46531 * 25 24 23 45 45 H 1.09003 * 113.61791 * 270.88212 * 26 25 24 46 46 H 1.09001 * 113.61741 * 139.98011 * 26 25 24 47 47 H 1.08992 * 113.61530 * 254.53364 * 27 24 23 48 48 H 1.08998 * 113.61202 * 25.35205 * 27 24 23 49 49 H 1.08999 * 109.98514 * 42.73928 * 30 9 7 50 50 H 1.08997 * 109.99270 * 281.42347 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.9328 -3.7200 0.0089 11 6 0.8083 -4.7677 -0.0287 12 1 0.6832 -5.3134 0.9066 13 6 1.0450 -5.6935 -1.2513 14 6 0.6190 -4.7788 -2.4261 15 7 -0.5346 -4.0184 -1.9127 16 6 -1.5056 -3.4632 -2.6647 17 8 -2.4686 -2.9470 -2.1303 18 6 -1.4006 -3.4814 -4.1324 19 6 -0.3229 -3.9189 -4.8827 20 6 -0.7018 -3.7378 -6.2149 21 7 -1.9094 -3.2337 -6.2238 22 7 -2.3474 -3.0709 -5.0273 23 6 -3.6622 -2.5287 -4.6761 24 6 -3.6080 -0.9999 -4.7057 25 6 -3.1560 -0.3738 -3.3758 26 6 -4.2243 0.7068 -3.6121 27 6 -4.9716 -0.3303 -4.4670 28 6 -0.4494 -3.9596 -0.4492 29 1 -1.3520 -4.3510 0.0201 30 6 -0.1352 -2.5238 0.0028 31 1 -0.4850 0.8400 -0.0004 32 1 2.5289 -3.8517 0.9120 33 1 2.5678 -3.8295 -0.8703 34 1 0.4129 -6.5798 -1.1978 35 1 2.0960 -5.9705 -1.3338 36 1 0.3249 -5.3793 -3.2870 37 1 1.4306 -4.1022 -2.6938 38 1 0.6122 -4.3159 -4.5161 39 1 -0.1029 -3.9689 -7.0834 40 1 -4.4036 -2.8799 -5.3938 41 1 -3.9379 -2.8631 -3.6759 42 1 -3.0772 -0.6120 -5.5751 43 1 -3.3549 -1.0019 -2.5075 44 1 -2.1356 0.0089 -3.3978 45 1 -3.8616 1.5624 -4.1817 46 1 -4.7607 0.9956 -2.7082 47 1 -5.4170 0.0873 -5.3699 48 1 -5.6674 -0.9472 -3.8983 49 1 -0.5763 -1.8095 -0.6924 50 1 -0.5243 -2.3559 1.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075795590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:10 Heat of formation + Delta-G solvation = 112.295453 kcal Electronic energy + Delta-G solvation = -32450.763848 eV Core-core repulsion = 28481.816705 eV Total energy + Delta-G solvation = -3968.947143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.38039 -40.03520 -38.65285 -37.62528 -34.87439 -33.15048 -32.28687 -30.86945 -30.70172 -28.61562 -28.09565 -26.47575 -25.35583 -24.74968 -23.83726 -23.13374 -21.64963 -21.61112 -20.26373 -19.45232 -19.23857 -18.85258 -17.11115 -16.71524 -16.37829 -15.99249 -15.65345 -15.23447 -15.02333 -14.60237 -14.19530 -14.03062 -13.81539 -13.75314 -13.63863 -13.13371 -12.93917 -12.74152 -12.48075 -12.13971 -12.03063 -11.94849 -11.89532 -11.58276 -11.39317 -11.08752 -11.03244 -10.78835 -10.61707 -10.54064 -10.44220 -10.28285 -10.21907 -10.11983 -10.04888 -9.82186 -9.69560 -9.48097 -8.96462 -8.78808 -8.61677 -8.14464 -6.79858 -5.64023 -3.04300 1.54412 2.53104 2.79235 3.38568 3.40213 3.45270 3.48032 3.60352 4.47609 4.52561 4.59861 4.76270 4.77367 4.79389 4.88517 5.02427 5.10161 5.14598 5.32296 5.33980 5.45999 5.49184 5.51738 5.51873 5.58560 5.72713 5.75301 5.77484 5.78572 5.86477 5.89426 5.96260 6.02273 6.05839 6.10032 6.23169 6.30471 6.36197 6.47482 6.52730 6.56188 6.64298 6.66253 6.80124 6.86881 6.94274 7.45263 7.66367 7.87973 7.93876 8.22932 8.38337 8.53699 9.23973 9.85625 10.47877 11.40824 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.005247 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.211603 B = 5334.601384 C = 7209.546481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.142 3.858 11 C -0.110 4.110 12 H 0.097 0.903 13 C -0.125 4.125 14 C 0.093 3.907 15 N -0.581 5.581 16 C 0.605 3.395 17 O -0.532 6.532 18 C -0.017 4.017 19 C -0.205 4.205 20 C -0.010 4.010 21 N -0.286 5.286 22 N -0.252 5.252 23 C 0.125 3.875 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.142 4.142 27 C -0.126 4.126 28 C 0.117 3.883 29 H 0.081 0.919 30 C 0.156 3.844 31 H 0.251 0.749 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.167 0.833 39 H 0.182 0.818 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.106 0.894 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 -10.501 -8.808 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.016 3.984 11 C -0.129 4.129 12 H 0.115 0.885 13 C -0.163 4.163 14 C -0.030 4.030 15 N -0.314 5.314 16 C 0.392 3.608 17 O -0.410 6.410 18 C -0.146 4.146 19 C -0.234 4.234 20 C -0.185 4.185 21 N -0.118 5.118 22 N -0.039 5.039 23 C 0.006 3.994 24 C -0.146 4.146 25 C -0.166 4.166 26 C -0.180 4.180 27 C -0.164 4.164 28 C 0.013 3.987 29 H 0.099 0.901 30 C 0.030 3.970 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.184 0.816 39 H 0.199 0.801 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.123 0.877 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.329 -9.537 -9.236 14.707 hybrid contribution 1.369 0.682 0.428 1.588 sum -4.960 -8.855 -8.808 13.438 Atomic orbital electron populations 1.69899 1.04654 1.24696 1.56665 1.24789 0.95693 0.97579 1.02163 0.86092 0.78706 0.84022 0.77228 1.20555 1.21846 1.21749 1.19019 0.90371 0.82271 1.44012 0.90507 1.44122 1.01546 0.99822 1.86989 1.21122 0.93449 0.85735 0.98076 1.23077 0.95884 0.96087 0.97876 0.88453 1.22833 1.01824 0.97266 0.94396 1.22709 0.89151 0.94009 0.97159 1.47845 1.23469 1.52669 1.07393 1.16334 0.82283 0.78571 0.83600 1.90717 1.31317 1.45480 1.73471 1.21444 0.92476 1.08282 0.92419 1.22694 1.00032 1.07569 0.93080 1.23504 0.93157 1.04118 0.97763 1.73124 1.14647 1.19242 1.04791 1.45717 1.13681 1.42703 1.01838 1.22339 0.78953 0.94442 1.03714 1.22940 0.98974 0.92329 1.00362 1.23090 0.99038 0.97401 0.97111 1.22782 0.98357 0.96936 0.99893 1.22840 0.95291 0.98181 1.00092 1.22726 0.97127 1.00240 0.78576 0.90124 1.21690 0.84859 0.90416 0.99989 0.93784 0.96171 0.95760 0.91049 0.89851 0.90212 0.90544 0.81621 0.80098 0.89146 0.86185 0.89110 0.87372 0.91723 0.90714 0.91274 0.91572 0.89838 0.87650 0.95987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.79 10.17 55.49 0.56 -26.23 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.23 -6.29 10.25 -15.06 -0.15 -6.45 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.88 3.37 -172.23 -0.58 -15.46 16 10 C 0.14 2.76 6.39 -3.72 -0.02 2.74 16 11 C -0.11 -1.72 4.27 -87.87 -0.38 -2.09 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.12 -1.51 6.31 -24.60 -0.16 -1.67 16 14 C 0.09 1.29 4.66 -2.57 -0.01 1.28 16 15 N -0.58 -10.26 3.01 -163.61 -0.49 -10.75 16 16 C 0.60 11.42 7.35 -12.64 -0.09 11.32 16 17 O -0.53 -11.01 12.13 5.25 0.06 -10.95 16 18 C -0.02 -0.30 6.89 -82.06 -0.57 -0.86 16 19 C -0.21 -2.98 9.27 -38.98 -0.36 -3.34 16 20 C -0.01 -0.13 12.03 -17.43 -0.21 -0.34 16 21 N -0.29 -4.45 11.90 30.59 0.36 -4.09 16 22 N -0.25 -4.05 3.35 -57.14 -0.19 -4.24 16 23 C 0.13 1.78 5.79 -4.04 -0.02 1.75 16 24 C -0.13 -1.81 3.96 -89.81 -0.36 -2.17 16 25 C -0.13 -2.21 7.19 -25.92 -0.19 -2.39 16 26 C -0.14 -1.97 8.08 -25.92 -0.21 -2.18 16 27 C -0.13 -1.49 7.64 -25.92 -0.20 -1.69 16 28 C 0.12 2.20 3.64 -66.20 -0.24 1.95 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 C 0.16 3.80 5.21 -3.53 -0.02 3.78 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.46 6.78 -51.93 -0.35 0.11 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 36 H 0.08 0.93 5.89 -51.93 -0.31 0.62 16 37 H 0.08 1.17 7.14 -51.93 -0.37 0.80 16 38 H 0.17 2.05 4.98 -52.49 -0.26 1.79 16 39 H 0.18 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.12 1.81 5.78 -51.93 -0.30 1.51 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.11 2.08 5.80 -51.93 -0.30 1.78 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 49 H 0.11 2.97 5.50 -51.93 -0.29 2.69 16 50 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -32.33 380.90 -10.46 -42.79 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.63 Total: 6.51 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.28 Total: -0.61 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.34 Total: -60.77 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.06 Total: -10.95 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.33 -10.46 -42.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075795590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.089 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds