Wall clock time and date at job start Wed Apr 1 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99720 * 2 1 4 4 H 1.48500 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47172 * 299.99551 * 3 2 1 6 6 H 1.48500 * 109.46850 * 59.99675 * 3 2 1 7 7 C 1.38807 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00429 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.46382 * 125.49488 * 180.31762 * 9 7 2 11 11 C 1.53747 * 108.45308 * 181.42271 * 10 9 7 12 12 H 1.09006 * 113.83580 * 250.87598 * 11 10 9 13 13 C 1.55169 * 108.31409 * 123.93900 * 11 10 9 14 14 C 1.54866 * 101.73331 * 285.38802 * 13 11 10 15 15 N 1.47400 * 104.81733 * 322.76889 * 14 13 11 16 16 C 1.34777 * 125.58773 * 204.40730 * 15 14 13 17 17 O 1.21633 * 119.99916 * 174.18655 * 16 15 14 18 18 C 1.47154 * 120.00194 * 354.18104 * 16 15 14 19 19 C 1.38407 * 126.88112 * 353.82858 * 18 16 15 20 20 C 1.39678 * 105.35987 * 179.97438 * 19 18 16 21 21 N 1.30865 * 107.86081 * 359.97438 * 20 19 18 22 22 N 1.28444 * 110.92536 * 0.02562 * 21 20 19 23 23 C 1.46501 * 125.18732 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.47566 * 277.12571 * 23 22 21 25 25 C 1.53778 * 113.61407 * 272.60904 * 24 23 22 26 26 C 1.53779 * 87.07874 * 220.01422 * 25 24 23 27 27 C 1.53781 * 113.61684 * 175.10561 * 24 23 22 28 28 C 1.46716 * 108.82501 * 24.66389 * 15 14 13 29 29 H 1.08999 * 111.53080 * 235.84120 * 28 15 14 30 30 C 1.46713 * 125.30794 * 359.97438 * 9 7 2 31 31 H 0.97001 * 120.00167 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.93199 * 61.43304 * 10 9 7 33 33 H 1.08997 * 109.21248 * 300.99486 * 10 9 7 34 34 H 1.08999 * 110.97869 * 167.27132 * 13 11 10 35 35 H 1.08999 * 111.00304 * 43.50663 * 13 11 10 36 36 H 1.09004 * 110.36418 * 203.93199 * 14 13 11 37 37 H 1.08998 * 110.37260 * 81.60664 * 14 13 11 38 38 H 1.07999 * 127.32244 * 359.97438 * 19 18 16 39 39 H 1.07995 * 126.07297 * 179.73858 * 20 19 18 40 40 H 1.08997 * 109.47328 * 37.13133 * 23 22 21 41 41 H 1.09007 * 109.47215 * 157.12741 * 23 22 21 42 42 H 1.09004 * 112.84450 * 43.90921 * 24 23 22 43 43 H 1.09000 * 113.61846 * 334.55960 * 25 24 23 44 44 H 1.08996 * 113.61779 * 105.46531 * 25 24 23 45 45 H 1.09003 * 113.61791 * 270.88212 * 26 25 24 46 46 H 1.09001 * 113.61741 * 139.98011 * 26 25 24 47 47 H 1.08992 * 113.61530 * 254.53364 * 27 24 23 48 48 H 1.08998 * 113.61202 * 25.35205 * 27 24 23 49 49 H 1.08999 * 109.98514 * 42.73928 * 30 9 7 50 50 H 1.08997 * 109.99270 * 281.42347 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.9328 -3.7200 0.0089 11 6 0.8083 -4.7677 -0.0287 12 1 0.6832 -5.3134 0.9066 13 6 1.0450 -5.6935 -1.2513 14 6 0.6190 -4.7788 -2.4261 15 7 -0.5346 -4.0184 -1.9127 16 6 -1.5056 -3.4632 -2.6647 17 8 -2.4686 -2.9470 -2.1303 18 6 -1.4006 -3.4814 -4.1324 19 6 -0.3229 -3.9189 -4.8827 20 6 -0.7018 -3.7378 -6.2149 21 7 -1.9094 -3.2337 -6.2238 22 7 -2.3474 -3.0709 -5.0273 23 6 -3.6622 -2.5287 -4.6761 24 6 -3.6080 -0.9999 -4.7057 25 6 -3.1560 -0.3738 -3.3758 26 6 -4.2243 0.7068 -3.6121 27 6 -4.9716 -0.3303 -4.4670 28 6 -0.4494 -3.9596 -0.4492 29 1 -1.3520 -4.3510 0.0201 30 6 -0.1352 -2.5238 0.0028 31 1 -0.4850 0.8400 -0.0004 32 1 2.5289 -3.8517 0.9120 33 1 2.5678 -3.8295 -0.8703 34 1 0.4129 -6.5798 -1.1978 35 1 2.0960 -5.9705 -1.3338 36 1 0.3249 -5.3793 -3.2870 37 1 1.4306 -4.1022 -2.6938 38 1 0.6122 -4.3159 -4.5161 39 1 -0.1029 -3.9689 -7.0834 40 1 -4.4036 -2.8799 -5.3938 41 1 -3.9379 -2.8631 -3.6759 42 1 -3.0772 -0.6120 -5.5751 43 1 -3.3549 -1.0019 -2.5075 44 1 -2.1356 0.0089 -3.3978 45 1 -3.8616 1.5624 -4.1817 46 1 -4.7607 0.9956 -2.7082 47 1 -5.4170 0.0873 -5.3699 48 1 -5.6674 -0.9472 -3.8983 49 1 -0.5763 -1.8095 -0.6924 50 1 -0.5243 -2.3559 1.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075795590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:09 Heat of formation + Delta-G solvation = 92.694007 kcal Electronic energy + Delta-G solvation = -32451.613831 eV Core-core repulsion = 28481.816705 eV Total energy + Delta-G solvation = -3969.797126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.55470 -41.44583 -39.84584 -39.10478 -36.57069 -34.44520 -33.86939 -32.47319 -32.02676 -30.25083 -29.25374 -28.01455 -26.62114 -26.55960 -25.14087 -24.32885 -23.10608 -22.81045 -21.82157 -20.77994 -20.44188 -20.21980 -18.90572 -18.21268 -17.71132 -17.24162 -16.95307 -16.82174 -16.43750 -16.11507 -15.66338 -15.48052 -15.21328 -15.04689 -14.84389 -14.56661 -14.30047 -14.04373 -13.91312 -13.72388 -13.49424 -13.25897 -13.12556 -13.02232 -12.92463 -12.87325 -12.54505 -12.38690 -12.08347 -11.95865 -11.83222 -11.74223 -11.67109 -11.48570 -11.45038 -11.39629 -11.28026 -10.92455 -10.73116 -10.19727 -9.94290 -9.57961 -8.84547 -7.78933 -5.20733 0.27214 1.34273 1.39962 1.40685 1.50891 1.68653 2.08114 2.26656 2.45853 3.29725 3.32805 3.41269 3.59032 3.62101 3.64928 3.70421 3.78295 3.79678 3.91188 4.02870 4.16660 4.21173 4.24270 4.37754 4.39362 4.47516 4.52652 4.57003 4.65076 4.74140 4.76334 4.80949 4.83559 4.85551 4.90406 4.96431 4.99292 5.04018 5.13758 5.18109 5.22295 5.30841 5.38888 5.47213 5.49999 5.55721 5.62560 5.78317 5.87440 6.29415 6.52285 7.03365 7.09624 7.16563 7.81259 8.41972 9.23313 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.005247 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.211603 B = 5334.601384 C = 7209.546481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.300 1.300 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.085 0.915 9 N -0.618 5.618 10 C 0.135 3.865 11 C -0.096 4.096 12 H 0.124 0.876 13 C -0.106 4.106 14 C 0.085 3.915 15 N -0.585 5.585 16 C 0.592 3.408 17 O -0.565 6.565 18 C -0.048 4.048 19 C -0.196 4.196 20 C -0.004 4.004 21 N -0.297 5.297 22 N -0.261 5.261 23 C 0.125 3.875 24 C -0.117 4.117 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.104 4.104 28 C 0.121 3.879 29 H 0.083 0.917 30 C 0.167 3.833 31 H 0.240 0.760 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.188 0.812 39 H 0.222 0.778 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.017 0.983 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.059 0.941 50 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -13.071 -10.880 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.228 1.228 6 H -0.221 1.221 7 C -0.363 4.363 8 H 0.103 0.897 9 N -0.344 5.344 10 C 0.010 3.990 11 C -0.116 4.116 12 H 0.142 0.858 13 C -0.144 4.144 14 C -0.036 4.036 15 N -0.317 5.317 16 C 0.381 3.619 17 O -0.445 6.445 18 C -0.176 4.176 19 C -0.225 4.225 20 C -0.179 4.179 21 N -0.130 5.130 22 N -0.048 5.048 23 C 0.005 3.995 24 C -0.136 4.136 25 C -0.177 4.177 26 C -0.177 4.177 27 C -0.141 4.141 28 C 0.017 3.983 29 H 0.101 0.899 30 C 0.041 3.959 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.205 0.795 39 H 0.238 0.762 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.077 0.923 50 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -5.118 -12.159 -11.312 17.378 hybrid contribution 1.091 1.487 1.100 2.148 sum -4.027 -10.672 -10.212 15.310 Atomic orbital electron populations 1.70207 1.06143 1.24356 1.58350 1.25612 0.96450 1.00904 1.03045 0.85119 0.78573 0.80025 0.76351 1.18404 1.22760 1.22096 1.19421 0.90951 0.83571 1.42330 0.89723 1.44387 1.01933 1.01381 1.86704 1.21406 0.94869 0.84066 0.98631 1.23104 0.91940 0.95575 1.00942 0.85800 1.22874 1.04314 0.96651 0.90548 1.22980 0.87363 0.94021 0.99253 1.47926 1.24224 1.52725 1.06777 1.16806 0.82235 0.78128 0.84764 1.90698 1.32821 1.46652 1.74338 1.21431 0.94151 1.10434 0.91609 1.23042 0.99866 1.06321 0.93244 1.24190 0.92597 1.02501 0.98646 1.73122 1.15731 1.19641 1.04462 1.45866 1.14034 1.43068 1.01871 1.22374 0.79277 0.94057 1.03787 1.22856 1.00282 0.92710 0.97793 1.22974 0.97315 0.99190 0.98249 1.22813 0.97328 0.96890 1.00681 1.22767 0.93984 0.96640 1.00738 1.22467 0.99004 0.97001 0.79833 0.89913 1.21293 0.84705 0.93356 0.96575 0.95073 0.95621 0.94383 0.88170 0.86822 0.87249 0.91904 0.79459 0.76182 0.86314 0.87691 0.89687 0.90181 0.96442 0.89982 0.91143 0.88656 0.88552 0.92291 1.00292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.42 10.17 21.65 0.22 -59.20 16 2 C -0.07 -3.95 5.48 84.86 0.47 -3.48 16 3 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 7 C -0.23 -13.19 10.25 84.03 0.86 -12.32 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 N -0.62 -31.54 3.37 -698.82 -2.36 -33.90 16 10 C 0.13 5.05 6.39 86.65 0.55 5.60 16 11 C -0.10 -2.78 4.27 -9.01 -0.04 -2.82 16 12 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 13 C -0.11 -2.08 6.31 31.98 0.20 -1.88 16 14 C 0.09 2.15 4.66 86.84 0.40 2.55 16 15 N -0.58 -20.70 3.01 -789.77 -2.37 -23.07 16 16 C 0.59 23.30 7.35 86.58 0.64 23.94 16 17 O -0.56 -25.36 12.13 -4.14 -0.05 -25.41 16 18 C -0.05 -1.64 6.89 40.78 0.28 -1.36 16 19 C -0.20 -5.33 9.27 22.66 0.21 -5.12 16 20 C 0.00 -0.09 12.03 85.18 1.02 0.93 16 21 N -0.30 -8.80 11.90 -57.14 -0.68 -9.48 16 22 N -0.26 -8.36 3.35 -334.69 -1.12 -9.48 16 23 C 0.12 3.57 5.79 86.38 0.50 4.07 16 24 C -0.12 -3.43 3.96 -10.27 -0.04 -3.47 16 25 C -0.14 -5.25 7.19 31.12 0.22 -5.02 16 26 C -0.14 -4.02 8.08 31.12 0.25 -3.77 16 27 C -0.10 -2.35 7.64 31.12 0.24 -2.11 16 28 C 0.12 4.63 3.64 46.00 0.17 4.80 16 29 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 30 C 0.17 8.65 5.21 86.60 0.45 9.10 16 31 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 1.34 6.78 -2.39 -0.02 1.32 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.66 7.96 -2.39 -0.02 1.64 16 36 H 0.11 2.13 5.89 -2.39 -0.01 2.11 16 37 H 0.06 1.77 7.14 -2.39 -0.02 1.76 16 38 H 0.19 4.07 4.98 -2.91 -0.01 4.06 16 39 H 0.22 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.10 3.36 5.78 -2.38 -0.01 3.34 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.08 3.46 5.80 -2.39 -0.01 3.45 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 48 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 49 H 0.06 3.62 5.50 -2.39 -0.01 3.61 16 50 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 Total: -1.00 -78.92 380.90 3.01 -75.92 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.95 Total: 25.38 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.39 Total: 9.64 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -6.31 Total: -135.12 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -78.92 3.01 -75.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075795590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.609 kcal (2) G-P(sol) polarization free energy of solvation -78.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds