Wall clock time and date at job start Wed Apr 1 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99473 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46586 * 125.31476 * 179.97438 * 9 7 2 11 11 C 1.53760 * 108.11207 * 181.28292 * 10 9 7 12 12 H 1.08995 * 113.20190 * 250.84042 * 11 10 9 13 13 C 1.55172 * 108.30424 * 124.37650 * 11 10 9 14 14 C 1.54860 * 101.73419 * 285.38750 * 13 11 10 15 15 N 1.47407 * 104.81921 * 322.77433 * 14 13 11 16 16 C 1.34778 * 125.58509 * 204.36210 * 15 14 13 17 17 O 1.21279 * 119.99351 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00551 * 0.02720 * 16 15 14 19 19 N 1.46494 * 109.47184 * 179.97438 * 18 16 15 20 20 C 1.35317 * 126.49631 * 264.68413 * 19 18 16 21 21 N 1.30754 * 108.76284 * 179.80961 * 20 19 18 22 22 C 1.33577 * 109.14892 * 0.42625 * 21 20 19 23 23 C 1.35019 * 107.97724 * 359.77518 * 22 21 20 24 24 C 1.50657 * 124.45422 * 179.85744 * 23 22 21 25 25 C 1.53398 * 108.38195 * 343.58224 * 24 23 22 26 26 C 1.53122 * 109.44447 * 49.64463 * 25 24 23 27 27 C 1.50860 * 128.03178 * 179.79347 * 22 21 20 28 28 C 1.46704 * 108.82385 * 24.40168 * 15 14 13 29 29 H 1.09006 * 111.53215 * 236.10627 * 28 15 14 30 30 C 1.46716 * 125.31141 * 359.69340 * 9 7 2 31 31 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.74791 * 300.95651 * 10 9 7 33 33 H 1.09000 * 109.74085 * 61.63006 * 10 9 7 34 34 H 1.09001 * 110.98012 * 43.50461 * 13 11 10 35 35 H 1.09000 * 110.97149 * 167.24641 * 13 11 10 36 36 H 1.09006 * 110.36661 * 81.61153 * 14 13 11 37 37 H 1.08998 * 110.37146 * 203.82285 * 14 13 11 38 38 H 1.09005 * 109.46688 * 300.00012 * 18 16 15 39 39 H 1.09000 * 109.46899 * 59.99628 * 18 16 15 40 40 H 1.07999 * 125.61649 * 359.95497 * 20 19 18 41 41 H 1.08996 * 109.68507 * 103.30063 * 24 23 22 42 42 H 1.09002 * 109.68298 * 223.82886 * 24 23 22 43 43 H 1.09001 * 109.47962 * 169.63752 * 25 24 23 44 44 H 1.08999 * 109.47755 * 289.65267 * 25 24 23 45 45 H 1.09003 * 109.45962 * 50.00727 * 26 25 24 46 46 H 1.09006 * 109.46347 * 169.98265 * 26 25 24 47 47 H 1.08999 * 109.68113 * 43.58557 * 27 22 21 48 48 H 1.09002 * 109.70889 * 283.06701 * 27 22 21 49 49 H 1.08996 * 109.98857 * 281.40718 * 30 9 7 50 50 H 1.09004 * 109.98695 * 42.71085 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9377 -3.7200 0.0005 11 6 0.8098 -4.7645 -0.0322 12 1 0.6989 -5.3063 0.9070 13 6 1.0421 -5.6945 -1.2524 14 6 0.6172 -4.7821 -2.4293 15 7 -0.5334 -4.0166 -1.9165 16 6 -1.5033 -3.4601 -2.6689 17 8 -2.4066 -2.8490 -2.1385 18 6 -1.4652 -3.5971 -4.1692 19 7 -2.6210 -2.9110 -4.7517 20 6 -3.8025 -3.4743 -5.0951 21 7 -4.5864 -2.5459 -5.5780 22 6 -3.9394 -1.3774 -5.5685 23 6 -2.7081 -1.5870 -5.0557 24 6 -1.6646 -0.5149 -4.8786 25 6 -2.0663 0.6964 -5.7298 26 6 -3.5291 1.0530 -5.4507 27 6 -4.4417 -0.0330 -6.0333 28 6 -0.4493 -3.9591 -0.4530 29 1 -1.3523 -4.3510 0.0154 30 6 -0.1353 -2.5239 0.0064 31 1 -0.4850 0.8401 -0.0004 32 1 2.5710 -3.8342 -0.8792 33 1 2.5344 -3.8509 0.9033 34 1 2.0923 -5.9747 -1.3352 35 1 0.4078 -6.5791 -1.1950 36 1 1.4306 -4.1088 -2.7001 37 1 0.3220 -5.3841 -3.2886 38 1 -0.5469 -3.1514 -4.5515 39 1 -1.4962 -4.6529 -4.4385 40 1 -4.0568 -4.5182 -4.9860 41 1 -1.6109 -0.2245 -3.8294 42 1 -0.6946 -0.8889 -5.2062 43 1 -1.4308 1.5451 -5.4771 44 1 -1.9465 0.4543 -6.7858 45 1 -3.6872 1.1212 -4.3744 46 1 -3.7640 2.0114 -5.9138 47 1 -5.4626 0.1187 -5.6828 48 1 -4.4172 0.0123 -7.1221 49 1 -0.5208 -2.3591 1.0125 50 1 -0.5789 -1.8072 -0.6848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076053314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:23 Heat of formation + Delta-G solvation = 59.252280 kcal Electronic energy + Delta-G solvation = -31991.858392 eV Core-core repulsion = 28020.611124 eV Total energy + Delta-G solvation = -3971.247268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16708 -40.21332 -37.96554 -36.45342 -34.84613 -33.99399 -32.32275 -30.92549 -30.34901 -29.11506 -28.74946 -27.52376 -26.20229 -24.75135 -23.40086 -22.74806 -21.83962 -21.22845 -20.48323 -19.66066 -18.80566 -18.58742 -17.38954 -16.81957 -16.57950 -16.09798 -15.41858 -15.00530 -14.74659 -14.48592 -14.46830 -14.04707 -13.81128 -13.68778 -13.40381 -13.22616 -13.16178 -12.95533 -12.72317 -12.37468 -12.31054 -12.09154 -11.85319 -11.70923 -11.66577 -11.22200 -11.07989 -10.80093 -10.78073 -10.76390 -10.73823 -10.62307 -10.38907 -10.22528 -9.95143 -9.82579 -9.72241 -9.61412 -9.12483 -8.65407 -8.25450 -7.84873 -6.85821 -5.67527 -3.09495 2.13681 2.74348 2.82627 3.30034 3.36496 3.38850 3.41319 3.43815 4.41499 4.47467 4.58605 4.59128 4.67760 4.78788 4.89721 4.94540 4.99731 5.03280 5.04785 5.27931 5.41300 5.42039 5.43121 5.47320 5.60845 5.63807 5.67889 5.69886 5.78993 5.82854 5.84740 5.93530 6.04384 6.09523 6.12665 6.21390 6.23671 6.33306 6.39745 6.46997 6.47599 6.58010 6.61653 6.76699 6.99608 7.32246 7.42115 7.60488 7.80766 7.89930 8.29461 8.34191 8.42191 9.19198 9.80675 10.42873 11.36547 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009558 B = 0.004655 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.685365 B = 6013.579186 C = 8278.993539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.142 3.858 11 C -0.110 4.110 12 H 0.097 0.903 13 C -0.123 4.123 14 C 0.098 3.902 15 N -0.595 5.595 16 C 0.511 3.489 17 O -0.510 6.510 18 C 0.091 3.909 19 N -0.433 5.433 20 C 0.176 3.824 21 N -0.485 5.485 22 C -0.007 4.007 23 C 0.002 3.998 24 C -0.048 4.048 25 C -0.109 4.109 26 C -0.120 4.120 27 C -0.028 4.028 28 C 0.116 3.884 29 H 0.078 0.922 30 C 0.156 3.844 31 H 0.254 0.746 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.200 0.800 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.021 0.979 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -9.757 -11.097 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.016 3.984 11 C -0.129 4.129 12 H 0.115 0.885 13 C -0.161 4.161 14 C -0.025 4.025 15 N -0.330 5.330 16 C 0.296 3.704 17 O -0.384 6.384 18 C -0.036 4.036 19 N -0.115 5.115 20 C -0.105 4.105 21 N -0.203 5.203 22 C -0.136 4.136 23 C -0.113 4.113 24 C -0.086 4.086 25 C -0.147 4.147 26 C -0.158 4.158 27 C -0.066 4.066 28 C 0.012 3.988 29 H 0.096 0.904 30 C 0.030 3.970 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.217 0.783 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.039 0.961 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.237 -9.344 -11.080 14.666 hybrid contribution 1.496 0.617 0.598 1.725 sum -0.740 -8.727 -10.483 13.660 Atomic orbital electron populations 1.69894 1.04702 1.25083 1.56276 1.24816 0.95664 0.97643 1.02037 0.86236 0.78467 0.83390 0.77866 1.21514 1.21173 1.21208 1.18936 0.90309 0.82332 1.44558 0.90610 1.44170 1.01496 0.99789 1.87082 1.21176 0.93395 0.85803 0.98048 1.23068 0.95964 0.96072 0.97834 0.88489 1.22788 1.01825 0.97191 0.94331 1.22358 0.89328 0.93920 0.96878 1.48218 1.23873 1.53324 1.07611 1.20046 0.82163 0.79977 0.88227 1.90818 1.34703 1.39664 1.73184 1.21633 0.89642 0.99711 0.92599 1.44516 1.13165 1.07928 1.45911 1.24798 0.81905 0.99928 1.03859 1.69899 1.30684 0.99263 1.20454 1.20332 0.91420 0.94617 1.07257 1.20898 0.99559 0.84495 1.06328 1.20142 0.94622 0.91749 1.02096 1.21506 0.96707 0.97029 0.99474 1.21615 0.94506 0.97747 1.01936 1.19859 0.98972 0.88139 0.99628 1.22683 0.96896 1.00208 0.79007 0.90405 1.21718 0.84702 0.90607 0.99954 0.93563 0.95782 0.96166 0.89883 0.91037 0.90711 0.91390 0.86625 0.86422 0.78315 0.89389 0.91345 0.91001 0.91803 0.91267 0.91338 0.90847 0.91224 0.96093 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.89 10.16 55.49 0.56 -26.33 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.33 10.25 -15.06 -0.15 -6.49 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.72 3.38 -171.96 -0.58 -15.31 16 10 C 0.14 2.70 6.41 -3.60 -0.02 2.67 16 11 C -0.11 -1.67 4.25 -87.87 -0.37 -2.05 16 12 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.12 -1.37 6.30 -24.60 -0.16 -1.52 16 14 C 0.10 1.19 6.23 -2.57 -0.02 1.17 16 15 N -0.60 -9.72 3.02 -162.16 -0.49 -10.21 16 16 C 0.51 8.90 7.55 -10.98 -0.08 8.82 16 17 O -0.51 -11.49 16.15 5.56 0.09 -11.40 16 18 C 0.09 1.16 5.48 -5.20 -0.03 1.13 16 19 N -0.43 -6.59 2.23 -115.26 -0.26 -6.85 16 20 C 0.18 2.63 12.57 -89.91 -1.13 1.50 16 21 N -0.49 -8.36 11.25 -10.74 -0.12 -8.48 16 22 C -0.01 -0.12 6.98 -82.90 -0.58 -0.70 16 23 C 0.00 0.04 6.73 -81.86 -0.55 -0.51 16 24 C -0.05 -0.74 6.06 -27.70 -0.17 -0.90 16 25 C -0.11 -1.38 5.91 -26.46 -0.16 -1.54 16 26 C -0.12 -1.52 5.90 -26.49 -0.16 -1.67 16 27 C -0.03 -0.38 6.30 -27.62 -0.17 -0.55 16 28 C 0.12 2.15 3.65 -66.12 -0.24 1.91 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 C 0.16 3.81 5.20 -3.44 -0.02 3.79 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.02 0.44 6.78 -51.93 -0.35 0.09 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.01 7.49 -51.93 -0.39 0.62 16 37 H 0.07 0.57 7.47 -51.93 -0.39 0.19 16 38 H 0.12 1.33 7.96 -51.93 -0.41 0.92 16 39 H 0.12 1.01 7.83 -51.93 -0.41 0.60 16 40 H 0.20 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 42 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.11 3.03 5.30 -51.93 -0.28 2.75 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -35.71 388.94 -12.15 -47.86 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.09 Total: 3.16 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -4.10 Total: 4.83 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.88 Total: -67.18 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.71 -12.15 -47.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076053314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.114 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds