Wall clock time and date at job start Wed Apr 1 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00570 * 2 1 4 4 H 1.48502 * 109.46936 * 275.70841 * 3 2 1 5 5 H 1.48506 * 109.46987 * 35.70486 * 3 2 1 6 6 H 1.48497 * 109.47302 * 155.70532 * 3 2 1 7 7 C 1.38818 * 119.99515 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00123 * 356.19932 * 7 2 1 9 9 N 1.36935 * 119.99841 * 176.21185 * 7 2 1 10 10 C 1.46504 * 120.00021 * 181.79953 * 9 7 2 11 11 H 1.08996 * 112.88264 * 336.58060 * 10 9 7 12 12 C 1.53958 * 113.66230 * 107.92780 * 10 9 7 13 13 C 1.53953 * 87.29373 * 89.82962 * 12 10 9 14 14 H 1.08996 * 113.65683 * 139.30201 * 13 12 10 15 15 N 1.46495 * 113.66112 * 270.26146 * 13 12 10 16 16 C 1.34783 * 120.00107 * 282.35297 * 15 13 12 17 17 O 1.21625 * 119.99603 * 5.14502 * 16 15 13 18 18 C 1.47161 * 120.00039 * 184.86618 * 16 15 13 19 19 C 1.38401 * 126.88460 * 185.38604 * 18 16 15 20 20 C 1.39669 * 105.36133 * 180.02562 * 19 18 16 21 21 N 1.30861 * 107.86139 * 0.02562 * 20 19 18 22 22 N 1.28438 * 110.92829 * 359.71458 * 21 20 19 23 23 C 1.46505 * 125.19769 * 180.27954 * 22 21 20 24 24 C 1.53782 * 113.60883 * 5.13561 * 23 22 21 25 25 C 1.53778 * 87.08248 * 220.01766 * 24 23 22 26 26 C 1.53779 * 113.61497 * 267.64275 * 23 22 21 27 27 C 1.52911 * 86.78433 * 24.73471 * 13 12 10 28 28 C 1.52904 * 121.14246 * 209.38013 * 27 13 12 29 29 C 1.53946 * 86.78522 * 209.37672 * 28 27 13 30 30 C 1.52911 * 121.13931 * 100.81292 * 27 13 12 31 31 H 0.97005 * 120.00009 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00054 * 1.79289 * 9 7 2 33 33 H 1.09001 * 113.57453 * 335.22421 * 12 10 9 34 34 H 1.08997 * 113.64508 * 204.44572 * 12 10 9 35 35 H 0.96999 * 119.99869 * 102.35287 * 15 13 12 36 36 H 1.08005 * 127.31670 * 0.02562 * 19 18 16 37 37 H 1.08005 * 126.07347 * 180.02562 * 20 19 18 38 38 H 1.08993 * 112.85260 * 136.43449 * 23 22 21 39 39 H 1.09005 * 113.61640 * 334.56410 * 24 23 22 40 40 H 1.08997 * 113.61533 * 105.46965 * 24 23 22 41 41 H 1.08996 * 113.61540 * 270.88548 * 25 24 23 42 42 H 1.09000 * 113.69324 * 139.99021 * 25 24 23 43 43 H 1.09004 * 113.60784 * 254.52278 * 26 23 22 44 44 H 1.08995 * 113.61821 * 25.33811 * 26 23 22 45 45 H 1.09006 * 113.66178 * 323.84956 * 28 27 13 46 46 H 1.09000 * 113.66308 * 94.90197 * 28 27 13 47 47 H 1.08999 * 113.58027 * 270.13103 * 29 28 27 48 48 H 1.08999 * 113.65206 * 139.34315 * 29 28 27 49 49 H 1.08999 * 113.66023 * 265.09807 * 30 27 13 50 50 H 1.08999 * 113.66192 * 36.15240 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3772 2.1159 -1.3932 5 1 1.5132 2.6148 0.8171 6 1 3.6029 1.4081 0.5760 7 6 2.0101 -1.2023 -0.0005 8 1 1.4718 -2.1365 0.0610 9 7 3.3772 -1.2036 -0.0789 10 6 4.1074 -2.4731 -0.1192 11 1 3.5444 -3.2998 0.3138 12 6 4.7141 -2.7934 -1.4975 13 6 5.9765 -2.0435 -1.0349 14 1 6.9066 -2.5263 -1.3348 15 7 5.9542 -0.6108 -1.3399 16 6 6.2107 -0.1843 -2.5924 17 8 6.3683 -0.9908 -3.4891 18 6 6.2941 1.2572 -2.8763 19 6 6.4455 1.8522 -4.1167 20 6 6.4714 3.2262 -3.8673 21 7 6.3445 3.4024 -2.5768 22 7 6.2332 2.2765 -1.9688 23 6 6.0696 2.1103 -0.5225 24 6 5.9139 3.4388 0.2364 25 6 6.8100 2.8299 1.3277 26 6 7.3977 1.9266 0.2306 27 6 5.5443 -2.3735 0.3942 28 6 5.9048 -1.4542 1.5617 29 6 5.8915 -2.7148 2.4453 30 6 6.1883 -3.5236 1.1694 31 1 -0.4850 0.8401 -0.0004 32 1 3.8622 -0.3640 -0.1078 33 1 4.1970 -2.3076 -2.3250 34 1 4.8766 -3.8578 -1.6669 35 1 5.7548 0.0309 -0.6404 36 1 6.5263 1.3589 -5.0741 37 1 6.5774 4.0052 -4.6079 38 1 5.3149 1.3676 -0.2644 39 1 6.3651 4.2892 -0.2749 40 1 4.8943 3.6353 0.5680 41 1 6.2572 2.2846 2.0926 42 1 7.5299 3.5333 1.7462 43 1 7.5760 0.9021 0.5576 44 1 8.2548 2.3622 -0.2829 45 1 6.8891 -0.9952 1.4692 46 1 5.1230 -0.7368 1.8111 47 1 4.9164 -2.9311 2.8817 48 1 6.6984 -2.7440 3.1776 49 1 5.6329 -4.4593 1.1055 50 1 7.2522 -3.6461 0.9667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078626437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:12 Heat of formation + Delta-G solvation = 142.873107 kcal Electronic energy + Delta-G solvation = -32997.463702 eV Core-core repulsion = 29029.842506 eV Total energy + Delta-G solvation = -3967.621197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.67190 -40.83157 -38.82984 -38.65400 -35.44301 -33.98545 -32.72651 -31.69849 -30.89206 -30.24600 -26.16178 -25.93228 -25.65967 -25.14711 -24.33045 -23.32732 -21.88544 -21.70637 -20.55779 -20.34657 -19.89559 -18.48932 -18.03772 -17.23699 -16.51146 -16.04482 -15.91120 -15.50982 -15.30618 -15.13821 -14.91261 -14.50693 -14.08492 -13.86548 -13.74448 -13.40568 -13.16410 -12.93113 -12.64127 -12.59710 -12.51236 -12.36031 -12.11300 -11.98091 -11.55034 -11.48844 -11.22450 -11.14577 -11.00252 -10.95344 -10.86984 -10.70459 -10.35319 -10.24886 -10.05565 -9.93123 -9.72650 -9.61379 -9.17469 -9.04499 -9.00389 -8.73406 -7.43817 -5.92525 -3.28447 1.30797 2.32977 2.64539 2.98317 3.05137 3.19581 3.27607 3.34836 3.89346 4.06959 4.27915 4.39737 4.40788 4.48502 4.55035 4.70136 4.78214 4.87527 4.91207 5.01486 5.10458 5.25677 5.27430 5.31992 5.39489 5.45496 5.48602 5.52245 5.56139 5.62166 5.68873 5.70109 5.75697 5.77219 5.82145 5.87285 5.99217 6.03050 6.06647 6.15232 6.17760 6.41088 6.52057 6.53300 6.58184 6.70060 6.70667 6.89980 7.47992 7.84115 8.01885 8.23043 8.27094 9.02276 9.74502 9.93246 11.25405 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008489 B = 0.006113 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.753109 B = 4579.411840 C = 5389.880960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.873 3.127 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.096 0.904 9 N -0.723 5.723 10 C 0.196 3.804 11 H 0.077 0.923 12 C -0.176 4.176 13 C 0.136 3.864 14 H 0.084 0.916 15 N -0.708 5.708 16 C 0.593 3.407 17 O -0.520 6.520 18 C -0.041 4.041 19 C -0.159 4.159 20 C -0.008 4.008 21 N -0.272 5.272 22 N -0.264 5.264 23 C 0.093 3.907 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.128 4.128 28 C -0.138 4.138 29 C -0.131 4.131 30 C -0.104 4.104 31 H 0.261 0.739 32 H 0.354 0.646 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.394 0.606 36 H 0.164 0.836 37 H 0.188 0.812 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.796 2.279 2.328 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.187 4.187 3 Si 0.704 3.296 4 H -0.209 1.209 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.374 4.374 8 H 0.114 0.886 9 N -0.363 5.363 10 C 0.085 3.915 11 H 0.095 0.905 12 C -0.218 4.218 13 C 0.032 3.968 14 H 0.102 0.898 15 N -0.364 5.364 16 C 0.378 3.622 17 O -0.394 6.394 18 C -0.168 4.168 19 C -0.188 4.188 20 C -0.185 4.185 21 N -0.105 5.105 22 N -0.054 5.054 23 C -0.008 4.008 24 C -0.169 4.169 25 C -0.175 4.175 26 C -0.182 4.182 27 C -0.130 4.130 28 C -0.176 4.176 29 C -0.168 4.168 30 C -0.142 4.142 31 H 0.071 0.929 32 H 0.187 0.813 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.181 0.819 37 H 0.205 0.795 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.529 2.427 2.686 17.899 hybrid contribution 0.327 0.989 -0.543 1.175 sum 17.856 3.416 2.142 18.306 Atomic orbital electron populations 1.69672 1.04869 1.25788 1.56890 1.24642 0.95189 0.96821 1.02041 0.86807 0.78634 0.86140 0.77982 1.20947 1.21054 1.20896 1.19107 0.80284 0.95000 1.43048 0.88611 1.42435 1.04165 1.01210 1.88459 1.20841 0.88241 0.89975 0.92474 0.90479 1.24138 0.96577 0.99557 1.01527 1.21729 0.98941 0.80068 0.96080 0.89834 1.46101 1.71112 1.08688 1.10496 1.16912 0.76953 0.85418 0.82899 1.90802 1.50093 1.54040 1.44491 1.21848 1.13740 0.90062 0.91112 1.22162 1.05919 0.93713 0.96994 1.23586 1.06497 0.96284 0.92094 1.73009 1.18970 1.09668 1.08826 1.45827 1.49770 1.02583 1.07175 1.23809 1.00679 1.02669 0.73658 1.23196 1.02194 0.95811 0.95687 1.22768 0.99343 0.99162 0.96266 1.23475 0.95882 1.02051 0.96803 1.23563 0.99842 0.98400 0.91242 1.22707 1.01004 0.97425 0.96415 1.22722 1.02007 0.96160 0.95910 1.22514 1.00113 0.96541 0.95054 0.92868 0.81285 0.90493 0.89835 0.76544 0.81884 0.79535 0.85735 0.87155 0.90002 0.88898 0.89588 0.89794 0.88507 0.90766 0.90663 0.89675 0.91814 0.90830 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.97 55.49 0.78 -27.64 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.87 21.31 27.52 -169.99 -4.68 16.63 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -5.92 4.70 56.52 0.27 -5.66 16 7 C -0.24 -6.63 10.45 -15.06 -0.16 -6.79 16 8 H 0.10 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.72 -16.10 4.54 -52.98 -0.24 -16.34 16 10 C 0.20 3.59 4.36 -67.47 -0.29 3.30 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.18 -3.09 7.55 -25.74 -0.19 -3.28 16 13 C 0.14 2.14 3.80 -67.48 -0.26 1.88 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 N -0.71 -11.82 4.45 -54.53 -0.24 -12.06 16 16 C 0.59 10.86 7.75 -12.64 -0.10 10.76 16 17 O -0.52 -10.55 16.86 5.26 0.09 -10.46 16 18 C -0.04 -0.70 6.96 -82.06 -0.57 -1.27 16 19 C -0.16 -2.41 10.85 -38.99 -0.42 -2.83 16 20 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 21 N -0.27 -4.20 10.78 30.59 0.33 -3.88 16 22 N -0.26 -4.23 3.54 -49.91 -0.18 -4.41 16 23 C 0.09 1.34 3.40 -67.12 -0.23 1.11 16 24 C -0.13 -1.64 7.52 -25.92 -0.19 -1.83 16 25 C -0.14 -1.34 8.08 -25.92 -0.21 -1.55 16 26 C -0.14 -1.57 7.71 -25.92 -0.20 -1.77 16 27 C -0.13 -1.83 0.80 -154.71 -0.12 -1.96 16 28 C -0.14 -1.81 6.82 -26.29 -0.18 -1.99 16 29 C -0.13 -1.50 8.08 -25.75 -0.21 -1.71 16 30 C -0.10 -1.18 7.84 -26.28 -0.21 -1.38 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.35 7.67 3.26 -40.82 -0.13 7.54 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.39 6.36 2.34 -40.82 -0.10 6.26 16 36 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 37 H 0.19 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.13 2.06 3.34 -51.93 -0.17 1.89 16 39 H 0.11 1.32 7.46 -51.93 -0.39 0.93 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.85 7.36 -51.93 -0.38 0.46 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.83 7.44 -51.93 -0.39 0.45 16 46 H 0.07 1.15 7.59 -51.93 -0.39 0.75 16 47 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -32.72 389.03 -9.70 -42.41 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -7.56 Total: 19.34 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.85 Total: -9.46 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.44 Total: -64.33 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.68 Total: 16.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.72 -9.70 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078626437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.286 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds