Wall clock time and date at job start Wed Apr 1 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00570 * 2 1 4 4 H 1.48502 * 109.46936 * 275.70841 * 3 2 1 5 5 H 1.48506 * 109.46987 * 35.70486 * 3 2 1 6 6 H 1.48497 * 109.47302 * 155.70532 * 3 2 1 7 7 C 1.38818 * 119.99515 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00123 * 356.19932 * 7 2 1 9 9 N 1.36935 * 119.99841 * 176.21185 * 7 2 1 10 10 C 1.46504 * 120.00021 * 181.79953 * 9 7 2 11 11 H 1.08996 * 112.88264 * 336.58060 * 10 9 7 12 12 C 1.53958 * 113.66230 * 107.92780 * 10 9 7 13 13 C 1.53953 * 87.29373 * 89.82962 * 12 10 9 14 14 H 1.08996 * 113.65683 * 139.30201 * 13 12 10 15 15 N 1.46495 * 113.66112 * 270.26146 * 13 12 10 16 16 C 1.34783 * 120.00107 * 282.35297 * 15 13 12 17 17 O 1.21625 * 119.99603 * 5.14502 * 16 15 13 18 18 C 1.47161 * 120.00039 * 184.86618 * 16 15 13 19 19 C 1.38401 * 126.88460 * 185.38604 * 18 16 15 20 20 C 1.39669 * 105.36133 * 180.02562 * 19 18 16 21 21 N 1.30861 * 107.86139 * 0.02562 * 20 19 18 22 22 N 1.28438 * 110.92829 * 359.71458 * 21 20 19 23 23 C 1.46505 * 125.19769 * 180.27954 * 22 21 20 24 24 C 1.53782 * 113.60883 * 5.13561 * 23 22 21 25 25 C 1.53778 * 87.08248 * 220.01766 * 24 23 22 26 26 C 1.53779 * 113.61497 * 267.64275 * 23 22 21 27 27 C 1.52911 * 86.78433 * 24.73471 * 13 12 10 28 28 C 1.52904 * 121.14246 * 209.38013 * 27 13 12 29 29 C 1.53946 * 86.78522 * 209.37672 * 28 27 13 30 30 C 1.52911 * 121.13931 * 100.81292 * 27 13 12 31 31 H 0.97005 * 120.00009 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00054 * 1.79289 * 9 7 2 33 33 H 1.09001 * 113.57453 * 335.22421 * 12 10 9 34 34 H 1.08997 * 113.64508 * 204.44572 * 12 10 9 35 35 H 0.96999 * 119.99869 * 102.35287 * 15 13 12 36 36 H 1.08005 * 127.31670 * 0.02562 * 19 18 16 37 37 H 1.08005 * 126.07347 * 180.02562 * 20 19 18 38 38 H 1.08993 * 112.85260 * 136.43449 * 23 22 21 39 39 H 1.09005 * 113.61640 * 334.56410 * 24 23 22 40 40 H 1.08997 * 113.61533 * 105.46965 * 24 23 22 41 41 H 1.08996 * 113.61540 * 270.88548 * 25 24 23 42 42 H 1.09000 * 113.69324 * 139.99021 * 25 24 23 43 43 H 1.09004 * 113.60784 * 254.52278 * 26 23 22 44 44 H 1.08995 * 113.61821 * 25.33811 * 26 23 22 45 45 H 1.09006 * 113.66178 * 323.84956 * 28 27 13 46 46 H 1.09000 * 113.66308 * 94.90197 * 28 27 13 47 47 H 1.08999 * 113.58027 * 270.13103 * 29 28 27 48 48 H 1.08999 * 113.65206 * 139.34315 * 29 28 27 49 49 H 1.08999 * 113.66023 * 265.09807 * 30 27 13 50 50 H 1.08999 * 113.66192 * 36.15240 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3772 2.1159 -1.3932 5 1 1.5132 2.6148 0.8171 6 1 3.6029 1.4081 0.5760 7 6 2.0101 -1.2023 -0.0005 8 1 1.4718 -2.1365 0.0610 9 7 3.3772 -1.2036 -0.0789 10 6 4.1074 -2.4731 -0.1192 11 1 3.5444 -3.2998 0.3138 12 6 4.7141 -2.7934 -1.4975 13 6 5.9765 -2.0435 -1.0349 14 1 6.9066 -2.5263 -1.3348 15 7 5.9542 -0.6108 -1.3399 16 6 6.2107 -0.1843 -2.5924 17 8 6.3683 -0.9908 -3.4891 18 6 6.2941 1.2572 -2.8763 19 6 6.4455 1.8522 -4.1167 20 6 6.4714 3.2262 -3.8673 21 7 6.3445 3.4024 -2.5768 22 7 6.2332 2.2765 -1.9688 23 6 6.0696 2.1103 -0.5225 24 6 5.9139 3.4388 0.2364 25 6 6.8100 2.8299 1.3277 26 6 7.3977 1.9266 0.2306 27 6 5.5443 -2.3735 0.3942 28 6 5.9048 -1.4542 1.5617 29 6 5.8915 -2.7148 2.4453 30 6 6.1883 -3.5236 1.1694 31 1 -0.4850 0.8401 -0.0004 32 1 3.8622 -0.3640 -0.1078 33 1 4.1970 -2.3076 -2.3250 34 1 4.8766 -3.8578 -1.6669 35 1 5.7548 0.0309 -0.6404 36 1 6.5263 1.3589 -5.0741 37 1 6.5774 4.0052 -4.6079 38 1 5.3149 1.3676 -0.2644 39 1 6.3651 4.2892 -0.2749 40 1 4.8943 3.6353 0.5680 41 1 6.2572 2.2846 2.0926 42 1 7.5299 3.5333 1.7462 43 1 7.5760 0.9021 0.5576 44 1 8.2548 2.3622 -0.2829 45 1 6.8891 -0.9952 1.4692 46 1 5.1230 -0.7368 1.8111 47 1 4.9164 -2.9311 2.8817 48 1 6.6984 -2.7440 3.1776 49 1 5.6329 -4.4593 1.1055 50 1 7.2522 -3.6461 0.9667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078626437.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:11 Heat of formation + Delta-G solvation = 122.578861 kcal Electronic energy + Delta-G solvation = -32998.343727 eV Core-core repulsion = 29029.842506 eV Total energy + Delta-G solvation = -3968.501221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.80807 -42.09936 -40.00950 -39.74291 -36.77673 -35.67823 -34.26479 -32.94522 -32.53197 -31.66134 -27.12311 -26.93793 -26.79273 -26.59079 -25.54624 -24.81933 -23.35234 -22.81501 -21.75541 -21.61323 -20.93156 -20.18934 -19.27256 -18.70664 -17.58913 -17.34258 -17.11080 -16.86539 -16.55389 -16.41607 -16.22564 -15.95094 -15.50866 -15.29483 -14.91721 -14.80201 -14.39692 -14.24280 -13.90346 -13.79928 -13.70345 -13.59690 -13.40443 -13.17244 -13.07370 -12.74550 -12.62220 -12.41265 -12.22719 -12.14542 -12.09934 -11.95866 -11.80710 -11.63542 -11.41752 -11.38370 -11.14434 -11.05593 -10.70865 -10.40569 -10.16294 -10.03637 -9.40246 -8.14577 -5.46762 0.05640 1.00181 1.19099 1.24504 1.25302 1.52854 1.78174 2.04459 2.29362 2.90231 3.08453 3.14709 3.17786 3.29108 3.38449 3.49766 3.57784 3.66935 3.81729 3.85916 3.91088 4.02450 4.10046 4.11541 4.24033 4.41979 4.49495 4.50785 4.53954 4.60792 4.65983 4.70746 4.76234 4.81290 4.84694 4.90459 4.91728 4.94642 5.03658 5.09838 5.15437 5.19148 5.20581 5.38720 5.44008 5.53012 5.58931 5.61224 5.70369 6.10406 6.16588 6.80457 6.94070 6.95495 7.70507 7.88277 9.06542 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008489 B = 0.006113 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.753109 B = 4579.411840 C = 5389.880960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.059 4.059 3 Si 0.931 3.069 4 H -0.303 1.303 5 H -0.285 1.285 6 H -0.237 1.237 7 C -0.225 4.225 8 H 0.065 0.935 9 N -0.725 5.725 10 C 0.175 3.825 11 H 0.069 0.931 12 C -0.176 4.176 13 C 0.137 3.863 14 H 0.102 0.898 15 N -0.704 5.704 16 C 0.589 3.411 17 O -0.551 6.551 18 C -0.073 4.073 19 C -0.163 4.163 20 C -0.002 4.002 21 N -0.282 5.282 22 N -0.266 5.266 23 C 0.070 3.930 24 C -0.136 4.136 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.116 4.116 28 C -0.139 4.139 29 C -0.125 4.125 30 C -0.091 4.091 31 H 0.257 0.743 32 H 0.358 0.642 33 H 0.034 0.966 34 H 0.108 0.892 35 H 0.397 0.603 36 H 0.174 0.826 37 H 0.226 0.774 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.745 2.875 3.683 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.250 4.250 3 Si 0.760 3.240 4 H -0.231 1.231 5 H -0.211 1.211 6 H -0.161 1.161 7 C -0.356 4.356 8 H 0.083 0.917 9 N -0.366 5.366 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.217 4.217 13 C 0.033 3.967 14 H 0.120 0.880 15 N -0.360 5.360 16 C 0.375 3.625 17 O -0.428 6.428 18 C -0.200 4.200 19 C -0.193 4.193 20 C -0.178 4.178 21 N -0.115 5.115 22 N -0.056 5.056 23 C -0.031 4.031 24 C -0.174 4.174 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.118 4.118 28 C -0.177 4.177 29 C -0.163 4.163 30 C -0.129 4.129 31 H 0.067 0.933 32 H 0.192 0.808 33 H 0.053 0.947 34 H 0.126 0.874 35 H 0.239 0.761 36 H 0.192 0.808 37 H 0.242 0.758 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.097 0.903 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 21.543 2.990 4.088 22.130 hybrid contribution -0.964 0.702 -1.064 1.598 sum 20.579 3.692 3.024 21.125 Atomic orbital electron populations 1.69843 1.06756 1.26402 1.59597 1.25356 0.96006 1.00473 1.03209 0.85840 0.79775 0.81426 0.76938 1.23076 1.21109 1.16144 1.19083 0.82490 0.93665 1.40343 0.91697 1.42345 1.02509 1.03083 1.88641 1.21115 0.90449 0.88044 0.93884 0.91250 1.24108 0.97442 1.01094 0.99095 1.21837 0.98539 0.79488 0.96802 0.87993 1.46153 1.70357 1.09243 1.10205 1.17160 0.76470 0.85910 0.82973 1.90769 1.51757 1.54928 1.45304 1.21939 1.15771 0.89915 0.92393 1.22508 1.05160 0.94597 0.97001 1.24233 1.04841 0.96545 0.92161 1.73009 1.19250 1.09572 1.09646 1.46003 1.49676 1.02257 1.07633 1.24078 1.02359 1.03265 0.73353 1.23294 1.02286 0.95198 0.96622 1.22782 0.98921 0.98943 0.95350 1.23463 0.94156 1.03063 0.96268 1.23388 0.95943 1.01320 0.91163 1.22807 1.01628 0.97490 0.95740 1.22688 1.02296 0.94822 0.96448 1.22597 1.01512 0.95440 0.93383 0.93338 0.80776 0.94662 0.87368 0.76092 0.80813 0.75752 0.88263 0.86753 0.91222 0.88320 0.86913 0.88772 0.87960 0.87982 0.92995 0.91290 0.88946 0.90286 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.66 13.97 21.65 0.30 -62.35 16 2 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 3 Si 0.93 45.32 27.52 68.60 1.89 47.20 16 4 H -0.30 -15.68 7.11 99.48 0.71 -14.98 16 5 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.24 -9.54 4.70 99.48 0.47 -9.08 16 7 C -0.22 -12.65 10.45 84.04 0.88 -11.77 16 8 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 9 N -0.72 -32.79 4.54 -321.53 -1.46 -34.25 16 10 C 0.17 6.39 4.36 45.29 0.20 6.58 16 11 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 12 C -0.18 -6.15 7.55 31.23 0.24 -5.91 16 13 C 0.14 4.07 3.80 45.28 0.17 4.24 16 14 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 15 N -0.70 -22.78 4.45 -444.68 -1.98 -24.76 16 16 C 0.59 21.40 7.75 86.59 0.67 22.07 16 17 O -0.55 -22.48 16.86 -4.11 -0.07 -22.55 16 18 C -0.07 -2.47 6.96 40.78 0.28 -2.19 16 19 C -0.16 -4.79 10.85 22.65 0.25 -4.54 16 20 C 0.00 -0.06 12.03 85.18 1.02 0.97 16 21 N -0.28 -8.22 10.78 -57.14 -0.62 -8.83 16 22 N -0.27 -8.17 3.54 -311.81 -1.10 -9.28 16 23 C 0.07 1.89 3.40 45.52 0.15 2.05 16 24 C -0.14 -3.09 7.52 31.12 0.23 -2.86 16 25 C -0.12 -1.93 8.08 31.12 0.25 -1.68 16 26 C -0.13 -2.43 7.71 31.12 0.24 -2.19 16 27 C -0.12 -3.05 0.80 -52.31 -0.04 -3.09 16 28 C -0.14 -3.19 6.82 30.88 0.21 -2.98 16 29 C -0.13 -2.41 8.08 31.23 0.25 -2.16 16 30 C -0.09 -1.70 7.84 30.89 0.24 -1.45 16 31 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 32 H 0.36 15.50 3.26 -92.71 -0.30 15.20 16 33 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.40 12.28 2.34 -92.71 -0.22 12.06 16 36 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.23 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.10 3.15 3.34 -2.39 -0.01 3.14 16 39 H 0.11 2.48 7.46 -2.38 -0.02 2.46 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.53 7.36 -2.39 -0.02 1.52 16 44 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.10 1.80 7.44 -2.38 -0.02 1.79 16 46 H 0.05 1.46 7.59 -2.39 -0.02 1.44 16 47 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 48 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -76.23 389.03 2.89 -73.34 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: 0.21 Total: 49.37 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 5.72 Total: -7.90 kcal Atomic # 7 Polarization: -134.61 SS G_CDS: -4.86 Total: -139.46 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.07 Total: -22.55 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.89 Total: 47.20 kcal Total: -76.23 2.89 -73.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078626437.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.922 kcal (2) G-P(sol) polarization free energy of solvation -76.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds