Wall clock time and date at job start Wed Apr 1 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 119.99905 * 2 1 4 4 H 1.48500 * 109.47197 * 239.99776 * 3 2 1 5 5 H 1.48501 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47566 * 119.99625 * 3 2 1 7 7 C 1.38816 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00107 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.47434 * 126.05858 * 359.96556 * 9 7 2 11 11 C 1.54500 * 107.14382 * 181.65382 * 10 9 7 12 12 C 1.56033 * 102.61582 * 22.84992 * 11 10 9 13 13 H 1.09001 * 112.86201 * 202.92716 * 12 11 10 14 14 C 1.53092 * 107.07177 * 78.60623 * 12 11 10 15 15 C 1.51357 * 111.38301 * 195.95425 * 14 12 11 16 16 N 1.47157 * 108.19985 * 56.63886 * 15 14 12 17 17 C 1.34774 * 121.22023 * 123.15041 * 16 15 14 18 18 O 1.21279 * 119.99962 * 174.50421 * 17 16 15 19 19 C 1.50703 * 119.99899 * 354.49236 * 17 16 15 20 20 H 1.08997 * 109.71870 * 335.23680 * 19 17 16 21 21 C 1.53439 * 109.71540 * 95.89428 * 19 17 16 22 22 C 1.53134 * 109.19794 * 168.21295 * 21 19 17 23 23 C 1.53242 * 109.56852 * 290.57972 * 22 21 19 24 24 N 1.46583 * 108.79737 * 50.56157 * 23 22 21 25 25 N 1.39655 * 127.54520 * 162.67625 * 24 23 22 26 26 C 1.31022 * 108.12626 * 180.12663 * 25 24 23 27 27 C 1.40059 * 108.25857 * 359.96120 * 26 25 24 28 28 C 1.34749 * 107.79502 * 359.97438 * 27 26 25 29 29 C 1.46755 * 117.56046 * 303.12249 * 16 15 14 30 30 C 1.46460 * 126.05840 * 180.02562 * 9 7 2 31 31 H 1.09000 * 108.42998 * 269.86847 * 30 9 7 32 32 H 0.96998 * 120.00697 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.90488 * 301.03013 * 10 9 7 34 34 H 1.09000 * 109.90222 * 62.09537 * 10 9 7 35 35 H 1.09000 * 110.78209 * 264.56592 * 11 10 9 36 36 H 1.09000 * 110.78049 * 141.12692 * 11 10 9 37 37 H 1.08996 * 109.25665 * 316.20308 * 14 12 11 38 38 H 1.09004 * 109.25136 * 75.63623 * 14 12 11 39 39 H 1.08993 * 109.30925 * 297.14580 * 15 14 12 40 40 H 1.09002 * 110.03859 * 176.55085 * 15 14 12 41 41 H 1.08995 * 109.51825 * 288.13433 * 21 19 17 42 42 H 1.08996 * 109.52167 * 48.31365 * 21 19 17 43 43 H 1.08998 * 109.45656 * 170.54068 * 22 21 19 44 44 H 1.09003 * 109.42513 * 50.59503 * 22 21 19 45 45 H 1.09001 * 109.57911 * 290.76316 * 23 22 21 46 46 H 1.09004 * 109.69308 * 170.42503 * 23 22 21 47 47 H 1.08000 * 125.87539 * 179.97438 * 26 25 24 48 48 H 1.07995 * 126.10466 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.23455 * 292.21720 * 29 16 15 50 50 H 1.09004 * 109.19260 * 172.83148 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1406 -2.5437 0.0030 11 6 -0.4377 -4.0592 0.0464 12 6 0.8725 -4.6460 0.6578 13 1 1.0218 -5.6969 0.4100 14 6 0.8117 -4.4032 2.1681 15 6 2.1721 -4.5727 2.8096 16 7 3.1114 -3.6558 2.1443 17 6 3.8045 -2.7365 2.8448 18 8 4.6452 -2.0597 2.2915 19 6 3.5348 -2.5492 4.3156 20 1 2.5210 -2.8753 4.5480 21 6 4.5430 -3.3658 5.1348 22 6 4.4552 -2.9457 6.6048 23 6 5.0034 -1.5238 6.7659 24 7 4.3578 -0.6540 5.7783 25 7 4.3014 0.7414 5.7810 26 6 3.6296 1.1242 4.7233 27 6 3.2386 -0.0187 4.0144 28 6 3.6987 -1.0949 4.6821 29 6 3.2661 -3.7796 0.6902 30 6 1.9198 -3.7267 0.0028 31 1 2.0575 -4.0435 -1.0310 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5646 -2.0572 0.8814 34 1 -0.5610 -2.1062 -0.9025 35 1 -0.6046 -4.4496 -0.9575 36 1 -1.2920 -4.2675 0.6905 37 1 0.4586 -3.3892 2.3553 38 1 0.1183 -5.1135 2.6187 39 1 2.5065 -5.6018 2.6787 40 1 2.1162 -4.3359 3.8721 41 1 4.3108 -4.4270 5.0448 42 1 5.5504 -3.1797 4.7628 43 1 5.0423 -3.6326 7.2144 44 1 3.4145 -2.9724 6.9279 45 1 6.0809 -1.5269 6.6012 46 1 4.7884 -1.1588 7.7702 47 1 3.4145 2.1455 4.4456 48 1 2.6705 -0.0346 3.0960 49 1 3.7496 -4.7290 0.4601 50 1 3.8881 -2.9623 0.3251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084975358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:02 Heat of formation + Delta-G solvation = 80.601882 kcal Electronic energy + Delta-G solvation = -33039.309242 eV Core-core repulsion = 29068.987762 eV Total energy + Delta-G solvation = -3970.321480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41149 -39.90732 -38.14545 -36.28141 -35.02604 -32.81819 -32.59006 -31.15153 -30.16348 -29.28364 -28.44171 -27.89819 -25.25113 -24.55349 -23.48258 -22.54303 -22.23990 -20.93227 -20.06990 -19.88898 -18.68486 -18.25687 -17.05497 -16.63591 -16.44251 -15.50210 -15.19915 -14.99774 -14.79846 -14.44901 -14.20372 -14.10178 -13.95929 -13.65045 -13.57510 -13.21415 -12.90361 -12.84290 -12.58867 -12.39781 -12.11155 -11.95520 -11.69633 -11.50011 -11.37929 -11.22992 -11.16573 -11.11489 -10.90832 -10.75987 -10.61059 -10.33476 -10.10570 -9.86692 -9.82287 -9.64626 -9.48848 -9.30843 -8.86742 -8.49697 -8.16220 -8.09507 -6.74294 -5.61574 -2.93638 2.12458 2.63265 3.06519 3.20404 3.47351 3.52513 3.55445 3.61934 4.27321 4.41266 4.55048 4.60801 4.63249 4.87116 4.95023 5.08502 5.12693 5.16036 5.22940 5.33030 5.40707 5.47966 5.49218 5.51381 5.57884 5.58517 5.70883 5.72383 5.79726 5.91038 5.98360 6.03102 6.03898 6.13160 6.22557 6.26179 6.30249 6.43659 6.48131 6.62440 6.63924 6.74359 6.92504 7.07841 7.08862 7.27987 7.64142 7.66240 7.86521 7.93108 8.03073 8.32745 8.65384 9.31840 9.92760 10.57229 11.50473 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.005779 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.734243 B = 4844.037996 C = 6693.846313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.004 4.004 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.587 5.587 10 C 0.178 3.822 11 C -0.143 4.143 12 C -0.099 4.099 13 H 0.074 0.926 14 C -0.125 4.125 15 C 0.109 3.891 16 N -0.592 5.592 17 C 0.536 3.464 18 O -0.523 6.523 19 C -0.044 4.044 20 H 0.110 0.890 21 C -0.114 4.114 22 C -0.132 4.132 23 C 0.135 3.865 24 N -0.374 5.374 25 N -0.301 5.301 26 C 0.045 3.955 27 C -0.231 4.231 28 C 0.096 3.904 29 C 0.115 3.885 30 C 0.154 3.846 31 H 0.026 0.974 32 H 0.250 0.750 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.180 0.820 48 H 0.156 0.844 49 H 0.053 0.947 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -12.793 12.036 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.728 3.272 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.313 5.313 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.119 4.119 13 H 0.092 0.908 14 C -0.163 4.163 15 C -0.014 4.014 16 N -0.325 5.325 17 C 0.322 3.678 18 O -0.398 6.398 19 C -0.067 4.067 20 H 0.128 0.872 21 C -0.153 4.153 22 C -0.171 4.171 23 C 0.013 3.987 24 N -0.159 5.159 25 N -0.123 5.123 26 C -0.140 4.140 27 C -0.259 4.259 28 C -0.030 4.030 29 C -0.009 4.009 30 C 0.045 3.955 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.107 0.893 47 H 0.197 0.803 48 H 0.173 0.827 49 H 0.072 0.928 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.244 -11.833 12.884 18.262 hybrid contribution -0.231 0.752 -0.857 1.163 sum 5.014 -11.080 12.027 17.104 Atomic orbital electron populations 1.69937 1.04775 1.24877 1.57659 1.24661 0.95500 0.97303 1.02524 0.86399 0.78641 0.83593 0.78567 1.21507 1.21913 1.20141 1.18951 0.90453 0.82006 1.42903 0.90283 1.44260 1.01330 0.99183 1.86505 1.21212 0.84351 0.88201 1.00851 1.23149 0.96018 0.99782 0.99201 1.22319 0.97270 0.97734 0.94590 0.90778 1.21553 0.95797 1.03412 0.95533 1.21451 0.90173 0.93116 0.96679 1.47774 1.42052 1.34714 1.07995 1.19713 0.81347 0.79353 0.87434 1.90708 1.33295 1.45080 1.70754 1.20082 1.01924 0.90499 0.94170 0.87190 1.21627 0.99810 0.99840 0.93976 1.21930 1.03049 0.94853 0.97235 1.21682 0.97255 0.88233 0.91499 1.48503 1.43521 1.04324 1.19601 1.77173 1.23752 0.88357 1.22974 1.23871 0.97240 1.00106 0.92772 1.21334 1.09954 0.90485 1.04166 1.20142 0.98115 0.94754 0.90016 1.21424 0.99015 1.01453 0.78972 1.20689 0.91061 0.87955 0.95767 0.95725 0.93982 0.93704 0.94126 0.92740 0.92330 0.90101 0.92059 0.91761 0.90426 0.89849 0.90394 0.88770 0.90381 0.90280 0.89259 0.80277 0.82677 0.92834 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.38 55.49 0.58 -26.26 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 3 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.21 -5.84 9.70 -15.06 -0.15 -5.99 16 8 H 0.08 2.23 6.51 -52.49 -0.34 1.89 16 9 N -0.59 -14.02 3.22 -164.45 -0.53 -14.55 16 10 C 0.18 4.11 4.64 -2.74 -0.01 4.10 16 11 C -0.14 -2.48 6.34 -24.32 -0.15 -2.63 16 12 C -0.10 -1.54 3.65 -88.44 -0.32 -1.86 16 13 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.12 -1.76 4.98 -27.51 -0.14 -1.90 16 15 C 0.11 1.35 6.24 -4.51 -0.03 1.32 16 16 N -0.59 -9.71 2.97 -174.99 -0.52 -10.23 16 17 C 0.54 9.67 6.43 -10.99 -0.07 9.60 16 18 O -0.52 -11.76 15.64 5.56 0.09 -11.67 16 19 C -0.04 -0.64 2.20 -92.61 -0.20 -0.84 16 20 H 0.11 1.44 6.04 -51.93 -0.31 1.12 16 21 C -0.11 -1.20 5.28 -26.43 -0.14 -1.34 16 22 C -0.13 -1.08 5.93 -26.54 -0.16 -1.24 16 23 C 0.13 1.46 7.28 -3.87 -0.03 1.44 16 24 N -0.37 -6.04 4.04 -56.95 -0.23 -6.27 16 25 N -0.30 -5.47 12.62 30.70 0.39 -5.09 16 26 C 0.05 0.85 12.03 -17.21 -0.21 0.64 16 27 C -0.23 -4.71 10.00 -40.14 -0.40 -5.11 16 28 C 0.10 1.69 5.75 -82.22 -0.47 1.22 16 29 C 0.11 2.05 5.67 -4.78 -0.03 2.02 16 30 C 0.15 2.94 2.97 -68.32 -0.20 2.74 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.04 1.15 7.09 -51.93 -0.37 0.79 16 34 H 0.04 1.06 7.56 -51.93 -0.39 0.67 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 37 H 0.08 1.46 6.95 -51.93 -0.36 1.10 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.80 5.47 -51.93 -0.28 0.52 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 48 H 0.16 3.64 8.06 -52.49 -0.42 3.22 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.09 2.03 5.57 -51.93 -0.29 1.74 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -34.43 379.52 -10.15 -44.58 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.81 Total: 3.91 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.81 Total: 1.95 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.32 Total: -62.40 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.43 -10.15 -44.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084975358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.182 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds