Wall clock time and date at job start Wed Apr 1 2020 03:01:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86802 * 120.00029 * 2 1
4 4 H 1.48500 * 109.46885 * 274.99889 * 3 2 1
5 5 H 1.48500 * 109.47032 * 34.99560 * 3 2 1
6 6 H 1.48498 * 109.47284 * 154.99968 * 3 2 1
7 7 C 1.38816 * 120.00086 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99809 * 174.91508 * 7 2 1
9 9 N 1.36933 * 119.99684 * 354.91065 * 7 2 1
10 10 C 1.47431 * 126.06261 * 5.03689 * 9 7 2
11 11 C 1.54503 * 107.14628 * 181.61804 * 10 9 7
12 12 C 1.56024 * 102.61493 * 22.85098 * 11 10 9
13 13 H 1.08997 * 113.51407 * 202.62281 * 12 11 10
14 14 C 1.53103 * 106.39191 * 78.37366 * 12 11 10
15 15 C 1.52835 * 110.57907 * 195.44254 * 14 12 11
16 16 N 1.47155 * 107.98144 * 57.34144 * 15 14 12
17 17 C 1.34777 * 121.21859 * 122.71427 * 16 15 14
18 18 O 1.21277 * 120.00419 * 185.42197 * 17 16 15
19 19 C 1.50706 * 119.99791 * 5.42451 * 17 16 15
20 20 H 1.08996 * 109.48105 * 25.34256 * 19 17 16
21 21 C 1.53117 * 109.47651 * 145.36179 * 19 17 16
22 22 C 1.53350 * 109.52925 * 190.00265 * 21 19 17
23 23 C 1.50855 * 108.41517 * 310.02058 * 22 21 19
24 24 N 1.33574 * 128.03530 * 196.76317 * 23 22 21
25 25 C 1.30749 * 109.15079 * 179.86593 * 24 23 22
26 26 N 1.35305 * 108.76640 * 0.02562 * 25 24 23
27 27 H 0.96998 * 126.49888 * 180.02562 * 26 25 24
28 28 C 1.35033 * 123.99006 * 16.65363 * 23 22 21
29 29 C 1.50653 * 124.44955 * 0.18007 * 28 23 22
30 30 C 1.46756 * 117.56567 * 302.98149 * 16 15 14
31 31 C 1.46475 * 126.05869 * 185.03698 * 9 7 2
32 32 H 1.09000 * 108.42261 * 269.90293 * 31 9 7
33 33 H 0.96996 * 119.99948 * 0.02562 * 1 2 3
34 34 H 1.08997 * 109.90294 * 301.00248 * 10 9 7
35 35 H 1.08996 * 109.90105 * 62.24369 * 10 9 7
36 36 H 1.08994 * 110.78795 * 264.56534 * 11 10 9
37 37 H 1.09011 * 110.78037 * 141.12985 * 11 10 9
38 38 H 1.08998 * 109.25178 * 75.15792 * 14 12 11
39 39 H 1.09003 * 109.22168 * 315.70238 * 14 12 11
40 40 H 1.09001 * 109.75926 * 297.72173 * 15 14 12
41 41 H 1.08993 * 109.80305 * 176.98737 * 15 14 12
42 42 H 1.08999 * 109.46180 * 69.97909 * 21 19 17
43 43 H 1.09006 * 109.45920 * 310.01991 * 21 19 17
44 44 H 1.09001 * 109.67346 * 190.28537 * 22 21 19
45 45 H 1.09004 * 109.67298 * 69.75173 * 22 21 19
46 46 H 1.08005 * 125.61482 * 179.97438 * 25 24 23
47 47 H 1.09007 * 109.67464 * 256.67751 * 29 28 23
48 48 H 1.08991 * 109.71073 * 136.14768 * 29 28 23
49 49 H 1.08997 * 109.23260 * 172.57907 * 30 16 15
50 50 H 1.09008 * 109.22980 * 291.94572 * 30 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.3920 2.1074 -1.3948
5 1 1.5044 2.6199 0.8030
6 1 3.5965 1.4120 0.5917
7 6 2.0102 -1.2022 -0.0005
8 1 3.0871 -1.2039 -0.0834
9 7 1.3296 -2.3857 0.1041
10 6 -0.1359 -2.5457 0.1192
11 6 -0.4279 -4.0528 0.2939
12 6 0.8841 -4.5797 0.9538
13 1 1.0450 -5.6480 0.8090
14 6 0.8086 -4.1941 2.4335
15 6 2.1829 -4.3155 3.0911
16 7 3.1192 -3.4567 2.3487
17 6 3.8087 -2.4773 2.9666
18 8 4.4991 -1.7198 2.3183
19 6 3.7219 -2.3236 4.4633
20 1 3.4642 -3.2826 4.9128
21 6 5.0731 -1.8514 5.0072
22 6 5.0662 -1.9334 6.5385
23 6 3.8205 -1.2509 7.0467
24 7 3.5634 -0.8238 8.2860
25 6 2.3731 -0.2835 8.3151
26 7 1.8327 -0.3539 7.0767
27 1 0.9585 -0.0296 6.8094
28 6 2.7485 -0.9656 6.2768
29 6 2.6426 -1.2901 4.8095
30 6 3.2702 -3.7016 0.9096
31 6 1.9285 -3.7173 0.2210
32 1 2.0671 -4.1219 -0.7816
33 1 -0.4850 0.8400 -0.0004
34 1 -0.5617 -1.9861 0.9520
35 1 -0.5573 -2.1929 -0.8221
36 1 -0.5933 -4.5293 -0.6722
37 1 -1.2817 -4.2073 0.9538
38 1 0.1071 -4.8556 2.9419
39 1 0.4589 -3.1652 2.5189
40 1 2.5209 -5.3510 3.0500
41 1 2.1259 -3.9875 4.1290
42 1 5.2482 -0.8205 4.6995
43 1 5.8656 -2.4875 4.6130
44 1 5.9481 -1.4317 6.9368
45 1 5.0655 -2.9779 6.8501
46 1 1.8990 0.1472 9.1847
47 1 2.7984 -0.3855 4.2214
48 1 1.6569 -1.7024 4.5944
49 1 3.8863 -2.9150 0.4742
50 1 3.7587 -4.6644 0.7586
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001085070567.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:10
Heat of formation + Delta-G solvation = 48.364998 kcal
Electronic energy + Delta-G solvation = -32541.208962 eV
Core-core repulsion = 28569.489587 eV
Total energy + Delta-G solvation = -3971.719376 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.29966 -40.11349 -38.37179 -35.98328 -34.98075 -33.15480 -32.82890 -31.25758
-30.08961 -29.50635 -28.64107 -28.36813 -24.76365 -24.41444 -23.55095 -22.60881
-22.35590 -21.53369 -20.02220 -19.76038 -18.77291 -18.07084 -17.83669 -16.90452
-16.54306 -15.49780 -15.37460 -14.94435 -14.83107 -14.44711 -14.34068 -13.99167
-13.95126 -13.68100 -13.55506 -13.18554 -13.06418 -12.86444 -12.73745 -12.35400
-11.99816 -11.90430 -11.69899 -11.51562 -11.41273 -11.24067 -10.94591 -10.92052
-10.81526 -10.78004 -10.65976 -10.09217 -9.91404 -9.88128 -9.86865 -9.83267
-9.67008 -9.50848 -9.12737 -8.51525 -8.16074 -8.07995 -6.77224 -5.65963
-2.96895 2.00788 2.90123 3.07499 3.26521 3.44350 3.45854 3.51183
3.60966 4.39509 4.57535 4.63541 4.79420 4.87154 4.99632 5.06169
5.14278 5.20288 5.25368 5.33659 5.38586 5.48474 5.55361 5.58174
5.64422 5.68457 5.71552 5.73846 5.81142 5.93335 5.97960 6.01260
6.06588 6.11778 6.12867 6.26149 6.28455 6.29207 6.37432 6.43038
6.47834 6.60793 6.74033 6.74789 6.92674 7.11197 7.33918 7.58184
7.64656 7.89854 7.93872 8.03953 8.29069 8.72672 9.28507 9.89401
10.53984 11.46402
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010580 B = 0.004547 C = 0.003976
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2645.746276 B = 6156.137586 C = 7040.013829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C -0.007 4.007
3 Si 0.897 3.103
4 H -0.292 1.292
5 H -0.294 1.294
6 H -0.274 1.274
7 C -0.207 4.207
8 H 0.081 0.919
9 N -0.588 5.588
10 C 0.178 3.822
11 C -0.143 4.143
12 C -0.100 4.100
13 H 0.075 0.925
14 C -0.123 4.123
15 C 0.108 3.892
16 N -0.594 5.594
17 C 0.525 3.475
18 O -0.527 6.527
19 C -0.096 4.096
20 H 0.092 0.908
21 C -0.100 4.100
22 C -0.030 4.030
23 C 0.000 4.000
24 N -0.487 5.487
25 C 0.171 3.829
26 N -0.559 5.559
27 H 0.421 0.579
28 C -0.013 4.013
29 C -0.031 4.031
30 C 0.113 3.887
31 C 0.153 3.847
32 H 0.025 0.975
33 H 0.248 0.752
34 H 0.047 0.953
35 H 0.037 0.963
36 H 0.053 0.947
37 H 0.058 0.942
38 H 0.060 0.940
39 H 0.079 0.921
40 H 0.063 0.937
41 H 0.078 0.922
42 H 0.077 0.923
43 H 0.074 0.926
44 H 0.079 0.921
45 H 0.074 0.926
46 H 0.206 0.794
47 H 0.090 0.910
48 H 0.080 0.920
49 H 0.095 0.905
50 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.633 -9.292 12.840 15.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.202 4.202
3 Si 0.727 3.273
4 H -0.219 1.219
5 H -0.221 1.221
6 H -0.200 1.200
7 C -0.335 4.335
8 H 0.099 0.901
9 N -0.314 5.314
10 C 0.054 3.946
11 C -0.182 4.182
12 C -0.120 4.120
13 H 0.093 0.907
14 C -0.161 4.161
15 C -0.015 4.015
16 N -0.326 5.326
17 C 0.312 3.688
18 O -0.402 6.402
19 C -0.118 4.118
20 H 0.110 0.890
21 C -0.138 4.138
22 C -0.069 4.069
23 C -0.130 4.130
24 N -0.206 5.206
25 C -0.112 4.112
26 N -0.162 5.162
27 H 0.259 0.741
28 C -0.130 4.130
29 C -0.070 4.070
30 C -0.010 4.010
31 C 0.045 3.955
32 H 0.042 0.958
33 H 0.058 0.942
34 H 0.065 0.935
35 H 0.055 0.945
36 H 0.072 0.928
37 H 0.076 0.924
38 H 0.078 0.922
39 H 0.098 0.902
40 H 0.081 0.919
41 H 0.096 0.904
42 H 0.096 0.904
43 H 0.093 0.907
44 H 0.098 0.902
45 H 0.093 0.907
46 H 0.223 0.777
47 H 0.109 0.891
48 H 0.099 0.901
49 H 0.113 0.887
50 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 2.549 -8.700 13.166 15.985
hybrid contribution -1.021 1.261 -0.739 1.783
sum 1.527 -7.439 12.427 14.564
Atomic orbital electron populations
1.69966 1.04787 1.24606 1.58135 1.24680 0.95490 0.97301 1.02767
0.86283 0.79506 0.84019 0.77449 1.21909 1.22068 1.19951 1.19022
0.90917 0.82020 1.41552 0.90090 1.44291 1.01319 1.00176 1.85587
1.21212 0.84473 0.88408 1.00549 1.23156 0.96058 0.99889 0.99075
1.22351 0.97163 0.97779 0.94732 0.90679 1.21834 0.95624 1.03186
0.95420 1.21693 0.89953 0.94177 0.95659 1.47814 1.42316 1.33469
1.09048 1.20163 0.79759 0.79819 0.89033 1.90704 1.41080 1.41718
1.66721 1.21281 0.97174 1.00079 0.93241 0.89019 1.21461 0.95250
1.03319 0.93812 1.19930 0.93341 0.99417 0.94166 1.20504 0.96972
1.06009 0.89528 1.69941 1.13900 1.14926 1.21852 1.24969 0.92283
1.05478 0.88450 1.42954 1.17194 1.46131 1.09900 0.74108 1.20966
0.92056 1.04964 0.94985 1.19942 0.99100 0.99913 0.88063 1.21295
0.98907 1.00709 0.80094 1.20630 0.91265 0.88209 0.95413 0.95769
0.94175 0.93462 0.94499 0.92775 0.92375 0.92156 0.90192 0.91872
0.90384 0.90410 0.90686 0.90242 0.90739 0.77701 0.89143 0.90111
0.88673 0.92930
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -26.89 10.41 55.49 0.58 -26.31 16
2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16
3 Si 0.90 23.04 29.56 -169.99 -5.02 18.02 16
4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16
5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16
6 H -0.27 -7.19 7.11 56.52 0.40 -6.78 16
7 C -0.21 -5.64 9.64 -15.06 -0.15 -5.79 16
8 H 0.08 2.28 6.57 -52.48 -0.35 1.94 16
9 N -0.59 -14.08 3.19 -164.67 -0.53 -14.61 16
10 C 0.18 4.11 4.62 -2.74 -0.01 4.09 16
11 C -0.14 -2.49 6.33 -24.32 -0.15 -2.65 16
12 C -0.10 -1.58 3.68 -88.43 -0.33 -1.90 16
13 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
14 C -0.12 -1.77 5.04 -26.76 -0.13 -1.90 16
15 C 0.11 1.40 6.21 -3.77 -0.02 1.37 16
16 N -0.59 -9.79 2.97 -174.36 -0.52 -10.31 16
17 C 0.53 9.31 6.67 -10.98 -0.07 9.23 16
18 O -0.53 -11.62 15.91 5.56 0.09 -11.53 16
19 C -0.10 -1.33 1.73 -91.50 -0.16 -1.49 16
20 H 0.09 1.07 6.14 -51.93 -0.32 0.76 16
21 C -0.10 -1.32 4.72 -26.49 -0.12 -1.44 16
22 C -0.03 -0.36 6.30 -27.63 -0.17 -0.54 16
23 C 0.00 -0.01 6.98 -82.90 -0.58 -0.59 16
24 N -0.49 -6.87 11.25 -10.74 -0.12 -6.99 16
25 C 0.17 1.86 13.05 -89.93 -1.17 0.69 16
26 N -0.56 -6.08 6.14 -10.28 -0.06 -6.15 16
27 H 0.42 3.42 8.96 -40.82 -0.37 3.05 16
28 C -0.01 -0.17 7.08 -81.85 -0.58 -0.75 16
29 C -0.03 -0.45 5.56 -27.70 -0.15 -0.61 16
30 C 0.11 2.03 5.66 -5.00 -0.03 2.00 16
31 C 0.15 2.94 2.97 -68.52 -0.20 2.74 16
32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16
34 H 0.05 1.21 6.91 -51.93 -0.36 0.85 16
35 H 0.04 0.96 7.71 -51.93 -0.40 0.56 16
36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
37 H 0.06 0.91 7.97 -51.92 -0.41 0.50 16
38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.08 1.45 6.85 -51.93 -0.36 1.09 16
40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
41 H 0.08 0.88 5.51 -51.93 -0.29 0.59 16
42 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16
43 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16
44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16
45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
46 H 0.21 1.35 8.06 -52.48 -0.42 0.92 16
47 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16
48 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16
49 H 0.10 2.03 5.53 -51.93 -0.29 1.74 16
50 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16
LS Contribution 378.52 15.07 5.70 5.70
Total: -1.00 -34.48 378.52 -11.77 -46.25
By element:
Atomic # 1 Polarization: 11.48 SS G_CDS: -7.75 Total: 3.73 kcal
Atomic # 6 Polarization: 6.32 SS G_CDS: -4.14 Total: 2.18 kcal
Atomic # 7 Polarization: -63.71 SS G_CDS: -0.65 Total: -64.36 kcal
Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal
Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.48 -11.77 -46.25 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001085070567.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.617 kcal
(2) G-P(sol) polarization free energy of solvation -34.477 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.775 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds