Wall clock time and date at job start Wed Apr 1 2020 03:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31918 * 120.17650 * 2 1 4 4 N 1.28278 * 122.32716 * 180.02562 * 3 2 1 5 5 C 1.31913 * 122.51592 * 0.02562 * 4 3 2 6 6 C 1.38502 * 119.97139 * 359.71346 * 5 4 3 7 7 C 1.39733 * 120.16828 * 180.02562 * 2 1 3 8 8 C 1.48133 * 121.14617 * 359.97438 * 7 2 1 9 9 O 1.21516 * 119.99693 * 313.95670 * 8 7 2 10 10 N 1.34770 * 120.00063 * 133.95826 * 8 7 2 11 11 C 1.47179 * 125.66258 * 4.48638 * 10 8 7 12 12 C 1.53699 * 107.10851 * 178.47054 * 11 10 8 13 13 C 1.54507 * 103.64929 * 338.46126 * 12 11 10 14 14 C 1.47484 * 125.66208 * 184.46746 * 10 8 7 15 15 H 1.08997 * 110.35517 * 85.07680 * 14 10 8 16 16 C 1.53000 * 110.35300 * 322.89140 * 14 10 8 17 17 C 1.52276 * 110.63635 * 96.57464 * 12 11 10 18 18 C 1.53316 * 109.42068 * 63.77752 * 17 12 11 19 19 N 1.46923 * 108.70855 * 53.51204 * 18 17 12 20 20 C 1.36940 * 120.56512 * 125.74456 * 19 18 17 21 21 H 1.07994 * 119.99767 * 331.05043 * 20 19 18 22 22 C 1.38811 * 120.00013 * 151.05322 * 20 19 18 23 23 N 1.31620 * 120.00151 * 339.33757 * 22 20 19 24 24 Si 1.86802 * 119.99872 * 159.33936 * 22 20 19 25 25 H 1.48497 * 109.47155 * 269.99781 * 24 22 20 26 26 H 1.48500 * 109.46844 * 29.99844 * 24 22 20 27 27 H 1.48496 * 109.46934 * 149.99957 * 24 22 20 28 28 C 1.46933 * 118.87126 * 306.01707 * 19 18 17 29 29 C 1.52278 * 110.62841 * 220.34874 * 12 11 10 30 30 H 1.08997 * 109.47547 * 267.37684 * 1 2 3 31 31 H 1.09003 * 109.46982 * 27.37563 * 1 2 3 32 32 H 1.08998 * 109.47397 * 147.37163 * 1 2 3 33 33 H 1.08005 * 120.01413 * 179.97438 * 5 4 3 34 34 H 1.08001 * 121.09404 * 180.30892 * 6 5 4 35 35 H 1.09005 * 109.90475 * 59.10612 * 11 10 8 36 36 H 1.08991 * 109.91020 * 297.84179 * 11 10 8 37 37 H 1.09006 * 111.01380 * 152.87972 * 13 12 11 38 38 H 1.08997 * 111.01404 * 276.75609 * 13 12 11 39 39 H 1.09002 * 109.46687 * 61.45609 * 16 14 10 40 40 H 1.09000 * 109.47352 * 181.45167 * 16 14 10 41 41 H 1.08994 * 109.47667 * 301.45675 * 16 14 10 42 42 H 1.09003 * 109.47718 * 303.79269 * 17 12 11 43 43 H 1.08993 * 109.48192 * 183.76491 * 17 12 11 44 44 H 1.08999 * 109.59979 * 293.74078 * 18 17 12 45 45 H 1.09008 * 109.72216 * 173.35488 * 18 17 12 46 46 H 0.96993 * 119.99783 * 180.02562 * 23 22 20 47 47 H 1.09006 * 109.59203 * 173.75483 * 28 19 18 48 48 H 1.09001 * 109.59368 * 294.21633 * 28 19 18 49 49 H 1.09000 * 109.47599 * 56.20744 * 29 12 11 50 50 H 1.09000 * 109.47968 * 176.23978 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1404 0.0000 4 7 3.4520 1.1885 -0.0005 5 6 4.2023 0.1036 -0.0015 6 6 3.6090 -1.1479 0.0039 7 6 2.2092 -1.2081 -0.0005 8 6 1.4982 -2.5076 -0.0006 9 8 0.5660 -2.6901 0.7573 10 7 1.8851 -3.4874 -0.8411 11 6 3.0489 -3.4365 -1.7406 12 6 3.1146 -4.7867 -2.4719 13 6 2.3123 -5.7372 -1.5554 14 6 1.2128 -4.7890 -1.0119 15 1 0.3962 -4.7027 -1.7286 16 6 0.6884 -5.2976 0.3324 17 6 2.4507 -4.6895 -3.8389 18 6 3.2295 -3.7011 -4.7148 19 7 4.6429 -4.1017 -4.7349 20 6 5.2916 -4.3074 -5.9232 21 1 4.7386 -4.6375 -6.7901 22 6 6.6598 -4.0917 -6.0135 23 7 7.2650 -3.3257 -5.1306 24 14 7.6423 -4.8884 -7.3882 25 1 8.1324 -6.2168 -6.9407 26 1 6.7758 -5.0570 -8.5823 27 1 8.7996 -4.0247 -7.7342 28 6 5.3470 -4.2837 -3.4581 29 6 4.5561 -5.2630 -2.5906 30 1 -0.3634 -0.0470 1.0265 31 1 -0.3633 0.9126 -0.4726 32 1 -0.3634 -0.8654 -0.5541 33 1 5.2788 0.1912 -0.0023 34 1 4.2058 -2.0481 0.0081 35 1 3.9594 -3.2835 -1.1611 36 1 2.9252 -2.6291 -2.4622 37 1 1.8749 -6.5553 -2.1278 38 1 2.9352 -6.1179 -0.7460 39 1 -0.0435 -4.5928 0.7269 40 1 0.2176 -6.2709 0.1941 41 1 1.5173 -5.3913 1.0339 42 1 1.4249 -4.3404 -3.7207 43 1 2.4484 -5.6712 -4.3125 44 1 3.1400 -2.6967 -4.3010 45 1 2.8309 -3.7154 -5.7293 46 1 8.2210 -3.1747 -5.1940 47 1 6.3435 -4.6845 -3.6441 48 1 5.4259 -3.3256 -2.9444 49 1 5.0044 -5.3154 -1.5984 50 1 4.5759 -6.2506 -3.0513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086931585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:55 Heat of formation + Delta-G solvation = 49.561028 kcal Electronic energy + Delta-G solvation = -31944.445797 eV Core-core repulsion = 27972.778285 eV Total energy + Delta-G solvation = -3971.667512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54653 -40.46385 -38.65425 -36.16275 -34.05363 -33.74862 -33.18083 -31.64036 -31.02117 -30.10372 -28.47413 -27.37761 -26.37539 -25.28855 -24.29910 -23.33776 -22.70983 -21.99248 -20.93918 -19.71392 -18.52242 -17.85423 -17.29259 -16.88717 -16.37427 -16.11567 -15.32107 -15.29016 -14.95678 -14.57527 -14.38404 -14.24384 -13.97252 -13.54770 -13.53960 -13.38322 -13.18230 -13.06056 -12.86468 -12.68992 -12.51194 -12.26544 -12.03356 -11.87512 -11.61972 -11.41691 -11.26248 -11.12063 -10.99677 -10.81417 -10.61433 -10.43045 -10.39767 -10.26904 -10.22960 -9.98131 -9.88181 -9.67735 -9.53367 -9.47822 -8.75583 -8.54195 -6.76597 -5.89718 -3.30706 0.27289 0.70733 2.40542 2.70507 3.31898 3.37951 3.40179 3.40649 3.83374 4.02677 4.17463 4.35903 4.42151 4.51220 4.55008 4.73231 4.84179 5.03814 5.09822 5.15638 5.24210 5.27529 5.27879 5.35263 5.43383 5.45617 5.50782 5.59821 5.63672 5.72279 5.75799 5.81646 5.85847 5.90185 5.94562 6.02755 6.06351 6.08214 6.15828 6.34423 6.38738 6.45427 6.50002 6.55849 6.69604 6.82429 7.16998 7.29554 7.45587 7.73182 7.87424 8.35231 8.51418 9.11148 9.74626 10.31547 11.19018 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.003718 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.551727 B = 7528.330511 C = 9054.608087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.113 3.887 3 N -0.245 5.245 4 N -0.227 5.227 5 C 0.037 3.963 6 C -0.081 4.081 7 C -0.124 4.124 8 C 0.581 3.419 9 O -0.524 6.524 10 N -0.602 5.602 11 C 0.102 3.898 12 C -0.053 4.053 13 C -0.124 4.124 14 C 0.136 3.864 15 H 0.078 0.922 16 C -0.164 4.164 17 C -0.120 4.120 18 C 0.144 3.856 19 N -0.588 5.588 20 C -0.258 4.258 21 H 0.065 0.935 22 C 0.008 3.992 23 N -0.898 5.898 24 Si 0.898 3.102 25 H -0.287 1.287 26 H -0.279 1.279 27 H -0.291 1.291 28 C 0.172 3.828 29 C -0.127 4.127 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.181 0.819 34 H 0.158 0.842 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.016 0.984 45 H 0.055 0.945 46 H 0.254 0.746 47 H 0.082 0.918 48 H 0.017 0.983 49 H 0.051 0.949 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 -1.478 11.287 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.031 4.031 3 N -0.087 5.087 4 N -0.068 5.068 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.139 4.139 8 C 0.368 3.632 9 O -0.401 6.401 10 N -0.335 5.335 11 C -0.020 4.020 12 C -0.054 4.054 13 C -0.162 4.162 14 C 0.034 3.966 15 H 0.096 0.904 16 C -0.222 4.222 17 C -0.160 4.160 18 C 0.018 3.982 19 N -0.311 5.311 20 C -0.388 4.388 21 H 0.082 0.918 22 C -0.191 4.191 23 N -0.541 5.541 24 Si 0.728 3.272 25 H -0.214 1.214 26 H -0.204 1.204 27 H -0.218 1.218 28 C 0.046 3.954 29 C -0.167 4.167 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.198 0.802 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.035 0.965 49 H 0.070 0.930 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.800 0.212 11.716 15.935 hybrid contribution 1.028 -2.004 -0.779 2.383 sum -9.772 -1.792 10.936 14.775 Atomic orbital electron populations 1.20716 0.86777 1.03873 1.04275 1.22979 0.99281 0.88672 0.92197 1.73039 1.01717 1.23822 1.10171 1.72866 0.99447 1.27821 1.06658 1.24341 1.02960 0.89072 0.96306 1.22820 0.93947 1.00805 0.93495 1.21042 0.94819 0.95413 1.02582 1.17487 0.83227 0.82258 0.80207 1.90734 1.29089 1.80778 1.39538 1.48615 1.29549 1.15705 1.39608 1.22499 0.87276 1.00022 0.92175 1.20944 0.97322 0.92348 0.94782 1.23002 0.96547 0.97333 0.99290 1.22017 0.95166 0.81672 0.97768 0.90398 1.22206 1.02417 1.01575 0.95968 1.21942 0.97707 1.01744 0.94569 1.20953 0.86308 0.93723 0.97242 1.43986 1.06036 1.78712 1.02339 1.19149 0.91030 1.38992 0.89611 0.91753 1.25010 0.98247 0.97855 0.98028 1.70064 1.09665 1.36381 1.37989 0.86360 0.79847 0.79091 0.81918 1.21397 1.20388 1.21771 1.20661 0.95821 0.94215 0.84729 1.22056 0.93129 1.01561 0.99932 0.89054 0.89876 0.90176 0.80180 0.82408 0.91052 0.90345 0.89768 0.90601 0.89586 0.92104 0.92748 0.93058 0.91597 0.96673 0.92602 0.93595 0.89970 0.96465 0.92994 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.15 36.00 0.33 -0.75 16 2 C 0.11 1.52 6.90 -82.00 -0.57 0.95 16 3 N -0.24 -3.62 11.42 33.81 0.39 -3.23 16 4 N -0.23 -3.28 11.48 30.53 0.35 -2.93 16 5 C 0.04 0.44 11.30 -17.42 -0.20 0.24 16 6 C -0.08 -0.95 8.73 -38.78 -0.34 -1.29 16 7 C -0.12 -1.62 5.46 -104.57 -0.57 -2.19 16 8 C 0.58 7.81 6.50 -12.20 -0.08 7.73 16 9 O -0.52 -7.78 13.22 5.35 0.07 -7.71 16 10 N -0.60 -7.59 3.25 -164.20 -0.53 -8.12 16 11 C 0.10 1.36 3.95 -3.31 -0.01 1.35 16 12 C -0.05 -0.73 0.53 -154.09 -0.08 -0.81 16 13 C -0.12 -1.38 5.41 -24.87 -0.13 -1.52 16 14 C 0.14 1.55 3.46 -66.32 -0.23 1.32 16 15 H 0.08 0.88 7.76 -51.93 -0.40 0.48 16 16 C -0.16 -1.78 8.65 37.16 0.32 -1.46 16 17 C -0.12 -1.80 4.78 -26.94 -0.13 -1.93 16 18 C 0.14 2.73 6.22 -3.65 -0.02 2.71 16 19 N -0.59 -13.35 2.98 -172.43 -0.51 -13.87 16 20 C -0.26 -6.67 9.53 -15.06 -0.14 -6.81 16 21 H 0.06 1.66 7.91 -52.49 -0.42 1.24 16 22 C 0.01 0.21 4.80 -17.43 -0.08 0.13 16 23 N -0.90 -24.63 11.51 55.49 0.64 -23.99 16 24 Si 0.90 20.76 29.60 -169.99 -5.03 15.73 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.17 3.58 5.04 -3.87 -0.02 3.56 16 29 C -0.13 -2.02 4.69 -27.16 -0.13 -2.15 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.89 6.92 -51.93 -0.36 0.53 16 33 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.16 1.57 5.94 -52.49 -0.31 1.25 16 35 H 0.07 0.91 5.29 -51.93 -0.27 0.64 16 36 H 0.08 1.18 6.07 -51.93 -0.32 0.87 16 37 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 38 H 0.08 0.82 7.92 -51.93 -0.41 0.41 16 39 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.69 7.49 -51.93 -0.39 0.30 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.30 6.53 -51.93 -0.34 -0.04 16 45 H 0.06 1.07 7.93 -51.92 -0.41 0.66 16 46 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 47 H 0.08 1.98 6.23 -51.93 -0.32 1.66 16 48 H 0.02 0.37 7.47 -51.93 -0.39 -0.02 16 49 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -29.82 380.58 -8.56 -38.38 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.58 Total: 0.93 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.09 Total: -0.91 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.33 Total: -52.14 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.07 Total: -7.71 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.82 -8.56 -38.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086931585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.937 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds