Wall clock time and date at job start Wed Apr 1 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31918 * 120.17650 * 2 1 4 4 N 1.28278 * 122.32716 * 180.02562 * 3 2 1 5 5 C 1.31913 * 122.51592 * 0.02562 * 4 3 2 6 6 C 1.38502 * 119.97139 * 359.71346 * 5 4 3 7 7 C 1.39733 * 120.16828 * 180.02562 * 2 1 3 8 8 C 1.48133 * 121.14617 * 359.97438 * 7 2 1 9 9 O 1.21516 * 119.99693 * 313.95670 * 8 7 2 10 10 N 1.34770 * 120.00063 * 133.95826 * 8 7 2 11 11 C 1.47179 * 125.66258 * 4.48638 * 10 8 7 12 12 C 1.53699 * 107.10851 * 178.47054 * 11 10 8 13 13 C 1.54507 * 103.64929 * 338.46126 * 12 11 10 14 14 C 1.47484 * 125.66208 * 184.46746 * 10 8 7 15 15 H 1.08997 * 110.35517 * 85.07680 * 14 10 8 16 16 C 1.53000 * 110.35300 * 322.89140 * 14 10 8 17 17 C 1.52276 * 110.63635 * 96.57464 * 12 11 10 18 18 C 1.53316 * 109.42068 * 63.77752 * 17 12 11 19 19 N 1.46923 * 108.70855 * 53.51204 * 18 17 12 20 20 C 1.36940 * 120.56512 * 125.74456 * 19 18 17 21 21 H 1.07994 * 119.99767 * 331.05043 * 20 19 18 22 22 C 1.38811 * 120.00013 * 151.05322 * 20 19 18 23 23 N 1.31620 * 120.00151 * 339.33757 * 22 20 19 24 24 Si 1.86802 * 119.99872 * 159.33936 * 22 20 19 25 25 H 1.48497 * 109.47155 * 269.99781 * 24 22 20 26 26 H 1.48500 * 109.46844 * 29.99844 * 24 22 20 27 27 H 1.48496 * 109.46934 * 149.99957 * 24 22 20 28 28 C 1.46933 * 118.87126 * 306.01707 * 19 18 17 29 29 C 1.52278 * 110.62841 * 220.34874 * 12 11 10 30 30 H 1.08997 * 109.47547 * 267.37684 * 1 2 3 31 31 H 1.09003 * 109.46982 * 27.37563 * 1 2 3 32 32 H 1.08998 * 109.47397 * 147.37163 * 1 2 3 33 33 H 1.08005 * 120.01413 * 179.97438 * 5 4 3 34 34 H 1.08001 * 121.09404 * 180.30892 * 6 5 4 35 35 H 1.09005 * 109.90475 * 59.10612 * 11 10 8 36 36 H 1.08991 * 109.91020 * 297.84179 * 11 10 8 37 37 H 1.09006 * 111.01380 * 152.87972 * 13 12 11 38 38 H 1.08997 * 111.01404 * 276.75609 * 13 12 11 39 39 H 1.09002 * 109.46687 * 61.45609 * 16 14 10 40 40 H 1.09000 * 109.47352 * 181.45167 * 16 14 10 41 41 H 1.08994 * 109.47667 * 301.45675 * 16 14 10 42 42 H 1.09003 * 109.47718 * 303.79269 * 17 12 11 43 43 H 1.08993 * 109.48192 * 183.76491 * 17 12 11 44 44 H 1.08999 * 109.59979 * 293.74078 * 18 17 12 45 45 H 1.09008 * 109.72216 * 173.35488 * 18 17 12 46 46 H 0.96993 * 119.99783 * 180.02562 * 23 22 20 47 47 H 1.09006 * 109.59203 * 173.75483 * 28 19 18 48 48 H 1.09001 * 109.59368 * 294.21633 * 28 19 18 49 49 H 1.09000 * 109.47599 * 56.20744 * 29 12 11 50 50 H 1.09000 * 109.47968 * 176.23978 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1404 0.0000 4 7 3.4520 1.1885 -0.0005 5 6 4.2023 0.1036 -0.0015 6 6 3.6090 -1.1479 0.0039 7 6 2.2092 -1.2081 -0.0005 8 6 1.4982 -2.5076 -0.0006 9 8 0.5660 -2.6901 0.7573 10 7 1.8851 -3.4874 -0.8411 11 6 3.0489 -3.4365 -1.7406 12 6 3.1146 -4.7867 -2.4719 13 6 2.3123 -5.7372 -1.5554 14 6 1.2128 -4.7890 -1.0119 15 1 0.3962 -4.7027 -1.7286 16 6 0.6884 -5.2976 0.3324 17 6 2.4507 -4.6895 -3.8389 18 6 3.2295 -3.7011 -4.7148 19 7 4.6429 -4.1017 -4.7349 20 6 5.2916 -4.3074 -5.9232 21 1 4.7386 -4.6375 -6.7901 22 6 6.6598 -4.0917 -6.0135 23 7 7.2650 -3.3257 -5.1306 24 14 7.6423 -4.8884 -7.3882 25 1 8.1324 -6.2168 -6.9407 26 1 6.7758 -5.0570 -8.5823 27 1 8.7996 -4.0247 -7.7342 28 6 5.3470 -4.2837 -3.4581 29 6 4.5561 -5.2630 -2.5906 30 1 -0.3634 -0.0470 1.0265 31 1 -0.3633 0.9126 -0.4726 32 1 -0.3634 -0.8654 -0.5541 33 1 5.2788 0.1912 -0.0023 34 1 4.2058 -2.0481 0.0081 35 1 3.9594 -3.2835 -1.1611 36 1 2.9252 -2.6291 -2.4622 37 1 1.8749 -6.5553 -2.1278 38 1 2.9352 -6.1179 -0.7460 39 1 -0.0435 -4.5928 0.7269 40 1 0.2176 -6.2709 0.1941 41 1 1.5173 -5.3913 1.0339 42 1 1.4249 -4.3404 -3.7207 43 1 2.4484 -5.6712 -4.3125 44 1 3.1400 -2.6967 -4.3010 45 1 2.8309 -3.7154 -5.7293 46 1 8.2210 -3.1747 -5.1940 47 1 6.3435 -4.6845 -3.6441 48 1 5.4259 -3.3256 -2.9444 49 1 5.0044 -5.3154 -1.5984 50 1 4.5759 -6.2506 -3.0513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086931585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:53 Heat of formation + Delta-G solvation = 32.587872 kcal Electronic energy + Delta-G solvation = -31945.181809 eV Core-core repulsion = 27972.778285 eV Total energy + Delta-G solvation = -3972.403523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.55845 -41.53165 -39.82665 -37.54828 -35.05025 -34.90859 -34.54854 -32.79767 -32.43237 -31.59861 -29.41164 -28.77011 -27.40453 -26.33129 -25.88800 -24.35073 -24.01341 -23.23261 -22.31502 -20.70322 -19.88671 -18.85319 -18.53190 -18.25668 -17.50872 -17.12705 -16.81531 -16.32616 -16.26950 -15.80111 -15.67428 -15.42083 -15.21061 -14.92984 -14.77553 -14.51192 -14.48088 -14.13627 -13.95868 -13.85125 -13.40555 -13.29782 -13.25790 -13.06810 -12.98941 -12.82084 -12.56805 -12.45716 -12.37317 -12.11003 -12.01630 -11.95034 -11.84070 -11.55517 -11.37414 -11.24572 -11.06640 -10.91900 -10.87351 -10.55887 -10.48182 -9.77394 -8.62227 -7.86712 -5.29201 -0.72795 -0.25387 1.37386 1.47323 1.50074 1.57246 1.70352 2.38296 2.52956 2.88120 3.02225 3.23035 3.26301 3.44303 3.46507 3.58680 3.69535 3.77533 3.83476 4.09071 4.15479 4.20844 4.30277 4.32680 4.37823 4.44690 4.52311 4.57775 4.59140 4.63676 4.69576 4.76256 4.81497 4.86127 4.93769 4.95380 4.96848 5.06612 5.13231 5.15581 5.20919 5.24251 5.28883 5.36613 5.41207 5.52537 5.54671 5.69727 5.79380 6.27303 6.41925 6.85429 7.18912 7.50629 7.90371 8.41116 9.18909 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.003718 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.551727 B = 7528.330511 C = 9054.608087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.105 3.895 3 N -0.269 5.269 4 N -0.254 5.254 5 C 0.038 3.962 6 C -0.076 4.076 7 C -0.137 4.137 8 C 0.585 3.415 9 O -0.539 6.539 10 N -0.598 5.598 11 C 0.108 3.892 12 C -0.051 4.051 13 C -0.110 4.110 14 C 0.133 3.867 15 H 0.084 0.916 16 C -0.156 4.156 17 C -0.107 4.107 18 C 0.141 3.859 19 N -0.605 5.605 20 C -0.265 4.265 21 H 0.060 0.940 22 C -0.040 4.040 23 N -0.927 5.927 24 Si 0.955 3.045 25 H -0.285 1.285 26 H -0.272 1.272 27 H -0.298 1.298 28 C 0.178 3.822 29 C -0.113 4.113 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.210 0.790 34 H 0.177 0.823 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.009 0.991 45 H 0.047 0.953 46 H 0.249 0.751 47 H 0.044 0.956 48 H 0.004 0.996 49 H 0.075 0.925 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.347 -3.292 11.968 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 N -0.111 5.111 4 N -0.095 5.095 5 C -0.126 4.126 6 C -0.105 4.105 7 C -0.151 4.151 8 C 0.372 3.628 9 O -0.417 6.417 10 N -0.330 5.330 11 C -0.014 4.014 12 C -0.051 4.051 13 C -0.148 4.148 14 C 0.031 3.969 15 H 0.102 0.898 16 C -0.214 4.214 17 C -0.146 4.146 18 C 0.015 3.985 19 N -0.329 5.329 20 C -0.395 4.395 21 H 0.078 0.922 22 C -0.236 4.236 23 N -0.572 5.572 24 Si 0.784 3.216 25 H -0.211 1.211 26 H -0.197 1.197 27 H -0.225 1.225 28 C 0.052 3.948 29 C -0.152 4.152 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.227 0.773 34 H 0.194 0.806 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.027 0.973 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.022 0.978 49 H 0.094 0.906 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.783 -1.608 12.398 17.179 hybrid contribution 1.309 -1.408 -1.015 2.174 sum -10.474 -3.016 11.383 15.760 Atomic orbital electron populations 1.20738 0.85454 1.04292 1.04718 1.23297 1.00285 0.88560 0.91896 1.72978 1.02116 1.24680 1.11333 1.72784 0.99687 1.29233 1.07762 1.24813 1.04176 0.88551 0.95093 1.23069 0.93659 1.01483 0.92297 1.21159 0.95497 0.95320 1.03119 1.17469 0.82972 0.82333 0.80069 1.90735 1.29740 1.81048 1.40199 1.48606 1.29316 1.16105 1.39022 1.22345 0.87881 0.99173 0.91990 1.20838 0.96152 0.93394 0.94765 1.22943 0.95946 0.96947 0.98925 1.22173 0.95350 0.80953 0.98386 0.89812 1.22116 1.01837 1.02184 0.95240 1.21778 0.98113 1.00396 0.94314 1.21069 0.84888 0.94673 0.97835 1.44233 1.07374 1.79171 1.02093 1.19417 0.91449 1.37936 0.90692 0.92198 1.25631 0.99135 0.98671 1.00211 1.70181 1.09388 1.37933 1.39706 0.85456 0.78275 0.77999 0.79861 1.21129 1.19717 1.22475 1.20511 0.94853 0.94641 0.84778 1.21846 0.93910 0.99629 0.99831 0.88447 0.88854 0.90329 0.77323 0.80561 0.90381 0.92263 0.87979 0.89493 0.91352 0.89916 0.93124 0.90909 0.91459 0.97304 0.93486 0.94149 0.93717 0.97771 0.90647 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.01 9.15 71.24 0.65 -1.36 16 2 C 0.10 2.78 6.90 42.91 0.30 3.07 16 3 N -0.27 -7.97 11.42 -46.95 -0.54 -8.51 16 4 N -0.25 -7.33 11.48 -57.33 -0.66 -7.99 16 5 C 0.04 0.87 11.30 84.74 0.96 1.83 16 6 C -0.08 -1.68 8.73 22.79 0.20 -1.48 16 7 C -0.14 -3.44 5.46 -19.83 -0.11 -3.55 16 8 C 0.58 14.76 6.50 86.87 0.57 15.33 16 9 O -0.54 -15.22 13.22 -3.77 -0.05 -15.27 16 10 N -0.60 -13.65 3.25 -791.69 -2.57 -16.22 16 11 C 0.11 2.66 3.95 86.49 0.34 3.00 16 12 C -0.05 -1.25 0.53 -51.91 -0.03 -1.27 16 13 C -0.11 -2.00 5.41 31.80 0.17 -1.82 16 14 C 0.13 2.58 3.46 45.50 0.16 2.74 16 15 H 0.08 1.58 7.76 -2.39 -0.02 1.56 16 16 C -0.16 -2.89 8.65 71.98 0.62 -2.26 16 17 C -0.11 -2.95 4.78 30.46 0.15 -2.80 16 18 C 0.14 5.25 6.22 86.40 0.54 5.79 16 19 N -0.61 -27.54 2.98 -699.44 -2.08 -29.63 16 20 C -0.26 -13.77 9.53 84.03 0.80 -12.97 16 21 H 0.06 3.10 7.91 -2.91 -0.02 3.08 16 22 C -0.04 -2.13 4.80 84.86 0.41 -1.72 16 23 N -0.93 -51.94 11.51 21.65 0.25 -51.69 16 24 Si 0.96 43.08 29.60 68.60 2.03 45.11 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 28 C 0.18 7.40 5.04 86.25 0.43 7.83 16 29 C -0.11 -3.35 4.69 30.31 0.14 -3.21 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.69 6.92 -2.39 -0.02 1.67 16 33 H 0.21 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.18 3.14 5.94 -2.91 -0.02 3.12 16 35 H 0.08 1.82 5.29 -2.38 -0.01 1.81 16 36 H 0.06 1.72 6.07 -2.39 -0.01 1.70 16 37 H 0.10 1.58 8.01 -2.38 -0.02 1.56 16 38 H 0.09 1.47 7.92 -2.39 -0.02 1.45 16 39 H 0.07 1.55 5.88 -2.39 -0.01 1.54 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.72 7.49 -2.39 -0.02 1.70 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.01 0.35 6.53 -2.39 -0.02 0.34 16 45 H 0.05 1.80 7.93 -2.38 -0.02 1.78 16 46 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 47 H 0.04 2.19 6.23 -2.38 -0.01 2.18 16 48 H 0.00 0.18 7.47 -2.39 -0.02 0.17 16 49 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 50 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -65.53 380.58 3.63 -61.90 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.95 Total: 15.15 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.30 Total: 7.15 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -5.60 Total: -114.04 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.05 Total: -15.27 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.53 3.63 -61.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086931585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.489 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds