Wall clock time and date at job start Wed Apr 1 2020 03:12:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.34940 * 126.04206 * 2 1
4 4 C 1.35321 * 107.74975 * 180.14457 * 3 2 1
5 5 C 1.50694 * 126.04316 * 179.87666 * 4 3 2
6 6 H 1.09004 * 110.39004 * 0.48915 * 5 4 3
7 7 C 1.54392 * 110.34378 * 238.26168 * 5 4 3
8 8 N 1.48142 * 104.61881 * 217.25857 * 7 5 4
9 9 C 1.34772 * 127.84146 * 219.58421 * 8 7 5
10 10 O 1.21278 * 120.00024 * 174.77594 * 9 8 7
11 11 C 1.50703 * 119.99769 * 355.04490 * 9 8 7
12 12 C 1.53000 * 110.34542 * 305.05548 * 11 9 8
13 13 C 1.51102 * 110.38528 * 67.33897 * 11 9 8
14 14 C 1.30727 * 110.99064 * 135.15672 * 13 11 9
15 15 C 1.51107 * 111.13588 * 0.16252 * 14 13 11
16 16 C 1.54631 * 104.72371 * 343.46062 * 15 14 13
17 17 C 1.48148 * 104.32103 * 39.84678 * 8 7 5
18 18 C 1.54286 * 110.34565 * 122.72324 * 5 4 3
19 19 H 1.09001 * 110.33886 * 359.89546 * 18 5 4
20 20 N 1.46501 * 110.34067 * 237.74019 * 18 5 4
21 21 C 1.36941 * 119.99381 * 154.99820 * 20 18 5
22 22 H 1.07996 * 120.00220 * 0.02562 * 21 20 18
23 23 C 1.38819 * 119.99749 * 179.97438 * 21 20 18
24 24 N 1.31625 * 119.99688 * 0.02562 * 23 21 20
25 25 Si 1.86791 * 120.00009 * 180.02562 * 23 21 20
26 26 H 1.48495 * 109.47258 * 359.97438 * 25 23 21
27 27 H 1.48493 * 109.47378 * 120.00415 * 25 23 21
28 28 H 1.48504 * 109.46974 * 240.00178 * 25 23 21
29 29 C 1.39873 * 107.91647 * 359.60948 * 4 3 2
30 30 N 1.30835 * 108.20199 * 0.24117 * 29 4 3
31 31 H 1.08996 * 109.47530 * 270.31346 * 1 2 3
32 32 H 1.09004 * 109.47064 * 30.30841 * 1 2 3
33 33 H 1.09001 * 109.47507 * 150.30826 * 1 2 3
34 34 H 1.08002 * 126.13102 * 0.02562 * 3 2 1
35 35 H 1.09000 * 110.40390 * 98.47174 * 7 5 4
36 36 H 1.08998 * 110.40309 * 336.04982 * 7 5 4
37 37 H 1.08997 * 109.47398 * 64.47017 * 12 11 9
38 38 H 1.09000 * 109.46773 * 184.47144 * 12 11 9
39 39 H 1.09003 * 109.47173 * 304.46614 * 12 11 9
40 40 H 1.07995 * 124.44739 * 315.23702 * 13 11 9
41 41 H 1.07996 * 124.41728 * 180.02562 * 14 13 11
42 42 H 1.09001 * 110.38657 * 224.64938 * 15 14 13
43 43 H 1.08993 * 110.38348 * 102.27285 * 15 14 13
44 44 H 1.09003 * 111.03727 * 266.60382 * 16 15 14
45 45 H 1.09000 * 111.07136 * 142.68377 * 16 15 14
46 46 H 1.08999 * 110.40810 * 78.93827 * 17 8 7
47 47 H 1.09005 * 110.40686 * 201.36897 * 17 8 7
48 48 H 0.96996 * 120.00374 * 334.99761 * 20 18 5
49 49 H 0.97001 * 119.99235 * 180.02562 * 24 23 21
50 50 H 1.07995 * 125.89401 * 180.21593 * 29 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.2589 1.0911 0.0000
4 6 3.5437 0.6664 -0.0033
5 6 4.7680 1.5450 -0.0071
6 1 4.4809 2.5965 0.0018
7 6 5.6448 1.2386 -1.2404
8 7 7.0370 1.3584 -0.7486
9 6 8.0952 1.8980 -1.3852
10 8 9.1574 2.0080 -0.8102
11 6 7.9570 2.3705 -2.8096
12 6 7.4299 1.2403 -3.6961
13 6 7.0373 3.5673 -2.8803
14 6 7.5373 4.4971 -3.6512
15 6 8.8694 4.0720 -4.2240
16 6 9.3154 2.8833 -3.3413
17 6 7.0036 0.7445 0.5993
18 6 5.6631 1.2231 1.2077
19 1 5.2162 0.4307 1.8082
20 7 5.8680 2.4238 2.0217
21 6 6.1661 2.3057 3.3530
22 1 6.2506 1.3275 3.8028
23 6 6.3609 3.4434 4.1242
24 7 6.2585 4.6356 3.5759
25 14 6.7682 3.2824 5.9400
26 1 6.8250 1.8451 6.3090
27 1 8.0838 3.9157 6.2103
28 1 5.7188 3.9583 6.7446
29 6 3.5346 -0.7323 0.0038
30 7 2.2891 -1.1328 0.0057
31 1 -0.3634 0.0056 1.0276
32 1 -0.3633 0.8872 -0.5186
33 1 -0.3634 -0.8927 -0.5090
34 1 1.9283 2.1193 0.0004
35 1 5.4568 1.9657 -2.0304
36 1 5.4543 0.2275 -1.6002
37 1 6.4214 0.9720 -3.3815
38 1 7.4106 1.5719 -4.7342
39 1 8.0824 0.3720 -3.6041
40 1 6.0934 3.6439 -2.3613
41 1 7.0594 5.4442 -3.8540
42 1 9.5898 4.8871 -4.1555
43 1 8.7529 3.7531 -5.2597
44 1 9.9533 3.2205 -2.5242
45 1 9.8163 2.1196 -3.9362
46 1 7.0222 -0.3426 0.5224
47 1 7.8421 1.0985 1.1991
48 1 5.7926 3.3024 1.6176
49 1 6.3949 5.4305 4.1147
50 1 4.4053 -1.3712 0.0066
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086991210.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:12:06
Heat of formation + Delta-G solvation = 67.404423 kcal
Electronic energy + Delta-G solvation = -31239.611453 eV
Core-core repulsion = 27268.717689 eV
Total energy + Delta-G solvation = -3970.893764 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.22830 -41.53189 -39.44723 -38.22718 -35.82544 -34.36710 -33.37138 -32.22256
-32.05386 -30.05457 -29.70024 -28.72641 -27.18409 -26.60848 -25.80232 -24.38079
-22.57821 -21.81587 -21.56522 -20.59416 -20.46002 -19.74667 -19.10384 -17.70289
-17.59878 -17.05381 -16.84412 -16.43642 -16.20870 -16.04938 -15.42597 -15.33754
-15.15893 -15.01258 -14.64556 -14.47303 -13.87060 -13.72243 -13.69500 -13.61118
-13.40477 -13.30327 -13.19442 -12.99378 -12.93497 -12.80699 -12.59234 -12.50132
-12.26646 -12.18034 -12.16101 -12.06156 -11.89376 -11.77250 -11.59314 -11.33346
-11.05294 -10.75578 -10.26102 -9.83401 -9.72636 -9.29267 -8.83956 -7.94545
-5.21404 1.03578 1.23646 1.43841 1.45945 1.54669 1.74451 1.78066
1.90768 2.11616 2.55171 3.35502 3.45437 3.58231 3.63142 3.81525
3.90457 3.98289 4.04730 4.08083 4.18126 4.31349 4.36707 4.40992
4.42402 4.46779 4.50205 4.62829 4.66889 4.68891 4.73398 4.75286
4.80244 4.85059 4.89276 4.93058 4.98038 5.02360 5.09807 5.21806
5.22754 5.23275 5.34853 5.38292 5.49254 5.57393 5.59622 5.78857
5.93443 6.21584 6.28116 6.71568 6.82100 7.24416 7.34284 8.10403
8.31979 9.29025
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.006396 B = 0.004937 C = 0.003143
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4377.000399 B = 5670.217362 C = 8906.930429
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.094 3.906
2 N -0.381 5.381
3 C 0.064 3.936
4 C -0.228 4.228
5 C -0.016 4.016
6 H 0.077 0.923
7 C 0.114 3.886
8 N -0.609 5.609
9 C 0.533 3.467
10 O -0.598 6.598
11 C -0.048 4.048
12 C -0.131 4.131
13 C -0.179 4.179
14 C -0.145 4.145
15 C -0.095 4.095
16 C -0.113 4.113
17 C 0.081 3.919
18 C 0.175 3.825
19 H 0.065 0.935
20 N -0.723 5.723
21 C -0.234 4.234
22 H 0.074 0.926
23 C -0.073 4.073
24 N -0.968 5.968
25 Si 0.965 3.035
26 H -0.266 1.266
27 H -0.300 1.300
28 H -0.291 1.291
29 C 0.052 3.948
30 N -0.329 5.329
31 H 0.077 0.923
32 H 0.114 0.886
33 H 0.094 0.906
34 H 0.194 0.806
35 H 0.100 0.900
36 H 0.096 0.904
37 H 0.076 0.924
38 H 0.088 0.912
39 H 0.058 0.942
40 H 0.130 0.870
41 H 0.147 0.853
42 H 0.078 0.922
43 H 0.104 0.896
44 H 0.052 0.948
45 H 0.090 0.910
46 H 0.085 0.915
47 H 0.038 0.962
48 H 0.371 0.629
49 H 0.249 0.751
50 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.355 -7.070 -20.440 23.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.163 5.163
3 C -0.083 4.083
4 C -0.240 4.240
5 C -0.037 4.037
6 H 0.095 0.905
7 C -0.008 4.008
8 N -0.340 5.340
9 C 0.323 3.677
10 O -0.479 6.479
11 C -0.051 4.051
12 C -0.188 4.188
13 C -0.197 4.197
14 C -0.163 4.163
15 C -0.132 4.132
16 C -0.151 4.151
17 C -0.045 4.045
18 C 0.065 3.935
19 H 0.083 0.917
20 N -0.361 5.361
21 C -0.366 4.366
22 H 0.092 0.908
23 C -0.265 4.265
24 N -0.619 5.619
25 Si 0.795 3.205
26 H -0.191 1.191
27 H -0.227 1.227
28 H -0.218 1.218
29 C -0.133 4.133
30 N -0.151 5.151
31 H 0.096 0.904
32 H 0.132 0.868
33 H 0.112 0.888
34 H 0.211 0.789
35 H 0.118 0.882
36 H 0.114 0.886
37 H 0.095 0.905
38 H 0.107 0.893
39 H 0.077 0.923
40 H 0.147 0.853
41 H 0.164 0.836
42 H 0.096 0.904
43 H 0.122 0.878
44 H 0.071 0.929
45 H 0.109 0.891
46 H 0.103 0.897
47 H 0.057 0.943
48 H 0.203 0.797
49 H 0.058 0.942
50 H 0.209 0.791
Dipole moment (debyes) X Y Z Total
from point charges -9.676 -8.097 -20.009 23.654
hybrid contribution 1.087 1.297 1.762 2.443
sum -8.589 -6.800 -18.247 21.283
Atomic orbital electron populations
1.22150 0.72218 1.05992 1.04193 1.48715 1.07775 1.03263 1.56527
1.22702 0.90669 0.94321 1.00616 1.19717 0.93648 0.93519 1.17086
1.20449 0.91260 0.98237 0.93784 0.90477 1.22787 0.78333 1.03381
0.96270 1.48903 1.09701 1.57937 1.17493 1.20906 0.81927 0.75738
0.89109 1.90646 1.29870 1.58007 1.69340 1.20671 0.97437 0.97031
0.89932 1.21883 1.01912 0.95369 0.99616 1.23176 1.00104 0.94890
1.01537 1.23652 0.96968 0.98605 0.97076 1.21421 0.94759 0.97102
0.99924 1.22526 0.94631 0.98839 0.99134 1.23313 1.00524 0.97117
0.83574 1.21446 0.91527 0.89479 0.91043 0.91670 1.42581 1.83688
1.03556 1.06301 1.19633 1.37740 0.92603 0.86657 0.90778 1.25456
1.03883 0.95164 1.02026 1.69818 1.58592 0.97154 1.36296 0.85193
0.76689 0.77670 0.80997 1.19084 1.22729 1.21780 1.23934 0.95345
0.94737 0.99292 1.77257 1.02202 1.09657 1.26030 0.90442 0.86801
0.88760 0.78901 0.88215 0.88648 0.90493 0.89289 0.92289 0.85251
0.83580 0.90392 0.87786 0.92896 0.89107 0.89746 0.94345 0.79678
0.94237 0.79070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.18 11.47 127.77 1.47 2.65 16
2 N -0.38 -8.36 4.01 -369.58 -1.48 -9.84 16
3 C 0.06 1.44 11.40 83.54 0.95 2.39 16
4 C -0.23 -5.81 4.72 -20.14 -0.10 -5.91 16
5 C -0.02 -0.46 3.24 -10.63 -0.03 -0.49 16
6 H 0.08 2.43 7.66 -2.39 -0.02 2.41 16
7 C 0.11 2.77 4.59 86.54 0.40 3.17 16
8 N -0.61 -20.07 3.28 -807.16 -2.65 -22.72 16
9 C 0.53 19.33 6.69 87.66 0.59 19.92 16
10 O -0.60 -28.09 15.72 -3.02 -0.05 -28.14 16
11 C -0.05 -1.23 0.56 -52.99 -0.03 -1.26 16
12 C -0.13 -2.38 8.18 71.98 0.59 -1.79 16
13 C -0.18 -4.28 8.40 26.05 0.22 -4.06 16
14 C -0.15 -2.95 10.78 26.06 0.28 -2.67 16
15 C -0.10 -1.76 6.81 30.53 0.21 -1.56 16
16 C -0.11 -2.83 6.04 31.71 0.19 -2.64 16
17 C 0.08 3.03 6.81 86.67 0.59 3.62 16
18 C 0.18 6.68 3.27 46.04 0.15 6.83 16
19 H 0.07 2.53 7.39 -2.39 -0.02 2.51 16
20 N -0.72 -36.32 5.13 -317.98 -1.63 -37.96 16
21 C -0.23 -13.19 9.96 84.03 0.84 -12.35 16
22 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16
23 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16
24 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16
25 Si 0.96 47.69 29.55 68.60 2.03 49.71 16
26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16
27 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16
28 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16
29 C 0.05 1.31 10.91 85.24 0.93 2.24 16
30 N -0.33 -8.74 12.58 -57.03 -0.72 -9.46 16
31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
32 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16
33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
34 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16
35 H 0.10 2.06 4.49 -2.39 -0.01 2.05 16
36 H 0.10 1.89 7.22 -2.39 -0.02 1.87 16
37 H 0.08 1.25 5.29 -2.39 -0.01 1.24 16
38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
40 H 0.13 3.07 6.56 -2.91 -0.02 3.05 16
41 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16
42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16
44 H 0.05 1.73 6.96 -2.39 -0.02 1.71 16
45 H 0.09 1.89 7.90 -2.39 -0.02 1.88 16
46 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16
47 H 0.04 1.83 7.77 -2.38 -0.02 1.82 16
48 H 0.37 20.30 7.55 -92.71 -0.70 19.60 16
49 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16
50 H 0.19 4.03 8.06 -2.91 -0.02 4.01 16
Total: -1.00 -81.14 398.19 3.74 -77.41
By element:
Atomic # 1 Polarization: 36.70 SS G_CDS: 0.25 Total: 36.95 kcal
Atomic # 6 Polarization: -3.45 SS G_CDS: 7.70 Total: 4.25 kcal
Atomic # 7 Polarization: -133.99 SS G_CDS: -6.20 Total: -140.19 kcal
Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal
Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal
Total: -81.14 3.74 -77.41 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086991210.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.813 kcal
(2) G-P(sol) polarization free energy of solvation -81.145 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.668 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.409 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds