Wall clock time and date at job start Wed Apr 1 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34945 * 126.04059 * 2 1 4 4 C 1.35309 * 107.74657 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.04155 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.30263 * 0.71799 * 5 4 3 7 7 C 1.54389 * 110.34539 * 238.54760 * 5 4 3 8 8 N 1.48145 * 104.62094 * 217.15703 * 7 5 4 9 9 C 1.34777 * 127.83833 * 219.58850 * 8 7 5 10 10 O 1.21283 * 119.99750 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99928 * 180.27304 * 9 8 7 12 12 C 1.53001 * 110.91362 * 59.02091 * 11 9 8 13 13 C 1.54638 * 111.03231 * 295.05262 * 11 9 8 14 14 C 1.51201 * 104.67536 * 266.58698 * 13 11 9 15 15 C 1.30530 * 111.11737 * 343.56357 * 14 13 11 16 16 C 1.51107 * 111.09987 * 0.02562 * 15 14 13 17 17 C 1.48144 * 104.32096 * 39.84078 * 8 7 5 18 18 C 1.54288 * 110.43599 * 122.95558 * 5 4 3 19 19 H 1.09004 * 110.34009 * 0.04585 * 18 5 4 20 20 N 1.46495 * 110.34660 * 237.89500 * 18 5 4 21 21 C 1.36932 * 120.00131 * 154.99545 * 20 18 5 22 22 H 1.07999 * 120.00433 * 0.02562 * 21 20 18 23 23 C 1.38820 * 119.99757 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99518 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47300 * 60.00031 * 25 23 21 27 27 H 1.48503 * 109.46773 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47202 * 299.99508 * 25 23 21 29 29 C 1.39873 * 107.92052 * 0.26113 * 4 3 2 30 30 N 1.30838 * 108.20340 * 359.55640 * 29 4 3 31 31 H 1.08998 * 109.46398 * 89.99902 * 1 2 3 32 32 H 1.09000 * 109.47396 * 209.99881 * 1 2 3 33 33 H 1.08999 * 109.47123 * 330.00566 * 1 2 3 34 34 H 1.08004 * 126.12589 * 359.97438 * 3 2 1 35 35 H 1.09001 * 110.40936 * 98.36340 * 7 5 4 36 36 H 1.09003 * 110.40611 * 335.93805 * 7 5 4 37 37 H 1.08994 * 109.47109 * 60.70400 * 12 11 9 38 38 H 1.09001 * 109.46986 * 180.70361 * 12 11 9 39 39 H 1.08995 * 109.46839 * 300.69806 * 12 11 9 40 40 H 1.08996 * 110.38672 * 25.41723 * 13 11 9 41 41 H 1.09006 * 110.38065 * 147.78808 * 13 11 9 42 42 H 1.07999 * 124.44003 * 163.58151 * 14 13 11 43 43 H 1.07992 * 124.45191 * 179.97438 * 15 14 13 44 44 H 1.09000 * 110.38915 * 257.62586 * 16 15 14 45 45 H 1.09008 * 110.48241 * 135.29609 * 16 15 14 46 46 H 1.09005 * 110.40649 * 78.94812 * 17 8 7 47 47 H 1.08999 * 110.40810 * 201.36974 * 17 8 7 48 48 H 0.97006 * 119.99770 * 335.00577 * 20 18 5 49 49 H 0.97000 * 120.00124 * 180.02562 * 24 23 21 50 50 H 1.08001 * 125.89671 * 179.73610 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7681 1.5451 -0.0002 6 1 4.4794 2.5960 0.0134 7 6 5.6443 1.2452 -1.2355 8 7 7.0368 1.3649 -0.7442 9 6 8.0937 1.9089 -1.3794 10 8 7.9590 2.3751 -2.4909 11 6 9.4443 1.9318 -0.7112 12 6 9.9116 0.5141 -0.3753 13 6 9.4234 2.8234 0.5521 14 6 9.8828 4.1810 0.0704 15 6 10.4616 4.0949 -1.0964 16 6 10.4845 2.6663 -1.5882 17 6 7.0052 0.7453 0.6011 18 6 5.6646 1.2194 1.2125 19 1 5.2203 0.4225 1.8089 20 7 5.8663 2.4162 2.0328 21 6 6.1653 2.2919 3.3633 22 1 6.2527 1.3116 3.8079 23 6 6.3559 3.4261 4.1407 24 7 6.2489 4.6208 3.5991 25 14 6.7644 3.2565 5.9556 26 1 8.0325 2.4991 6.1089 27 1 6.9186 4.6058 6.5564 28 1 5.6675 2.5300 6.6441 29 6 3.5346 -0.7322 -0.0070 30 7 2.2891 -1.1329 -0.0006 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.9283 2.1193 -0.0004 35 1 5.4547 1.9754 -2.0223 36 1 5.4552 0.2353 -1.5995 37 1 9.9962 -0.0675 -1.2932 38 1 10.8829 0.5589 0.1173 39 1 9.1887 0.0413 0.2893 40 1 8.4132 2.8851 0.9566 41 1 10.1110 2.4340 1.3030 42 1 9.7498 5.1012 0.6198 43 1 10.8697 4.9345 -1.6394 44 1 11.4741 2.2318 -1.4468 45 1 10.1968 2.6198 -2.6386 46 1 7.0255 -0.3415 0.5195 47 1 7.8437 1.0979 1.2016 48 1 5.7880 3.2968 1.6335 49 1 6.3825 5.4133 4.1422 50 1 4.4054 -1.3712 -0.0130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086995313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:13 Heat of formation + Delta-G solvation = 69.751625 kcal Electronic energy + Delta-G solvation = -31579.705041 eV Core-core repulsion = 27608.913059 eV Total energy + Delta-G solvation = -3970.791982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.24129 -41.56638 -39.36379 -38.11459 -35.66595 -34.48233 -33.37279 -32.62540 -32.04764 -29.86176 -29.10465 -28.72444 -27.21138 -26.57684 -25.90537 -24.62527 -22.49525 -22.06585 -21.73098 -20.63108 -19.99582 -19.48751 -19.00160 -17.73144 -17.41990 -17.18106 -16.78409 -16.30170 -16.22808 -16.21223 -15.42645 -15.28610 -15.09791 -14.97568 -14.62693 -14.10084 -13.95131 -13.73979 -13.62768 -13.57377 -13.52153 -13.30246 -13.21359 -13.10160 -12.97143 -12.84201 -12.72643 -12.47162 -12.22109 -12.18608 -12.10141 -11.96657 -11.89972 -11.66871 -11.51233 -11.35200 -10.94428 -10.69161 -10.28487 -9.77811 -9.70934 -9.29354 -8.77957 -7.84315 -5.11447 1.00482 1.38824 1.52897 1.53100 1.58745 1.66315 1.74916 1.88509 2.09729 2.62381 3.46756 3.48958 3.56475 3.61536 3.74387 3.93749 3.99871 4.01539 4.11862 4.19195 4.35933 4.37656 4.41640 4.47673 4.48577 4.53795 4.62984 4.71602 4.74002 4.75936 4.80255 4.83386 4.85526 4.87615 4.93688 4.97745 5.01528 5.08410 5.14855 5.20807 5.28866 5.29839 5.39100 5.52731 5.64942 5.68723 5.78102 5.99504 6.17883 6.35483 6.67503 6.79437 7.22241 7.43454 8.17698 8.41236 9.38055 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007535 B = 0.004877 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.199188 B = 5739.436022 C = 8530.405215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.381 5.381 3 C 0.058 3.942 4 C -0.228 4.228 5 C -0.016 4.016 6 H 0.066 0.934 7 C 0.120 3.880 8 N -0.609 5.609 9 C 0.546 3.454 10 O -0.589 6.589 11 C -0.079 4.079 12 C -0.135 4.135 13 C -0.090 4.090 14 C -0.182 4.182 15 C -0.165 4.165 16 C -0.078 4.078 17 C 0.074 3.926 18 C 0.174 3.826 19 H 0.070 0.930 20 N -0.719 5.719 21 C -0.228 4.228 22 H 0.079 0.921 23 C -0.065 4.065 24 N -0.964 5.964 25 Si 0.957 3.043 26 H -0.277 1.277 27 H -0.304 1.304 28 H -0.284 1.284 29 C 0.054 3.946 30 N -0.328 5.328 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.189 0.811 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.370 0.630 49 H 0.246 0.754 50 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 -10.139 -9.064 13.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.088 4.088 4 C -0.240 4.240 5 C -0.037 4.037 6 H 0.085 0.915 7 C -0.003 4.003 8 N -0.340 5.340 9 C 0.336 3.664 10 O -0.470 6.470 11 C -0.082 4.082 12 C -0.192 4.192 13 C -0.127 4.127 14 C -0.200 4.200 15 C -0.182 4.182 16 C -0.116 4.116 17 C -0.051 4.051 18 C 0.064 3.936 19 H 0.088 0.912 20 N -0.358 5.358 21 C -0.360 4.360 22 H 0.097 0.903 23 C -0.258 4.258 24 N -0.615 5.615 25 Si 0.787 3.213 26 H -0.203 1.203 27 H -0.231 1.231 28 H -0.210 1.210 29 C -0.131 4.131 30 N -0.150 5.150 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.206 0.794 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.132 0.868 43 H 0.155 0.845 44 H 0.124 0.876 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.202 0.798 49 H 0.055 0.945 50 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.516 -10.963 -9.500 14.723 hybrid contribution 0.445 1.783 1.103 2.143 sum -2.071 -9.180 -8.397 12.613 Atomic orbital electron populations 1.22144 0.72224 1.05632 1.04520 1.48712 1.07780 1.03231 1.56658 1.22673 0.90904 0.94245 1.01024 1.19766 0.93657 0.93767 1.16780 1.20416 0.91418 0.97677 0.94203 0.91510 1.22358 0.79919 1.02006 0.95985 1.48861 1.08629 1.57695 1.18840 1.20337 0.85770 0.75637 0.84635 1.90601 1.85575 1.49092 1.21726 1.21556 0.91547 0.98889 0.96198 1.21905 1.02871 0.91799 1.02606 1.21524 1.02558 0.92472 0.96161 1.23345 1.00293 0.98275 0.98122 1.23410 1.00114 0.98376 0.96343 1.21359 0.98474 0.92236 0.99484 1.23714 1.01546 0.97736 0.82150 1.21438 0.91902 0.89888 0.90401 0.91192 1.42555 1.83710 1.03254 1.06252 1.19507 1.37554 0.92539 0.86370 0.90329 1.25318 1.04087 0.95225 1.01129 1.69800 1.58486 0.97088 1.36099 0.85463 0.78294 0.75686 0.81813 1.20290 1.23138 1.21025 1.23974 0.95443 0.94525 0.99163 1.77242 1.02235 1.09555 1.26003 0.89391 0.89054 0.87580 0.79358 0.91957 0.89232 0.91295 0.89595 0.91107 0.91350 0.89098 0.86784 0.84514 0.87627 0.90849 0.88841 0.89892 0.79813 0.94485 0.78532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 11.47 127.77 1.47 2.80 16 2 N -0.38 -9.06 4.01 -369.55 -1.48 -10.54 16 3 C 0.06 1.46 11.39 83.54 0.95 2.41 16 4 C -0.23 -6.24 4.73 -20.14 -0.10 -6.33 16 5 C -0.02 -0.48 3.23 -10.63 -0.03 -0.51 16 6 H 0.07 2.33 7.66 -2.39 -0.02 2.31 16 7 C 0.12 3.53 6.55 86.53 0.57 4.10 16 8 N -0.61 -19.33 3.25 -807.16 -2.63 -21.95 16 9 C 0.55 19.07 6.66 87.66 0.58 19.66 16 10 O -0.59 -24.25 15.78 -3.04 -0.05 -24.30 16 11 C -0.08 -2.31 0.58 -51.82 -0.03 -2.34 16 12 C -0.13 -2.98 8.24 71.98 0.59 -2.39 16 13 C -0.09 -3.00 4.92 30.56 0.15 -2.85 16 14 C -0.18 -6.11 10.78 26.29 0.28 -5.82 16 15 C -0.16 -4.83 10.78 26.26 0.28 -4.55 16 16 C -0.08 -2.14 5.74 30.53 0.18 -1.96 16 17 C 0.07 2.19 4.56 86.67 0.39 2.59 16 18 C 0.17 5.98 3.27 46.04 0.15 6.13 16 19 H 0.07 2.43 7.41 -2.38 -0.02 2.41 16 20 N -0.72 -32.38 5.14 -318.00 -1.63 -34.02 16 21 C -0.23 -11.41 9.96 84.04 0.84 -10.58 16 22 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 23 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 24 N -0.96 -56.13 13.06 21.65 0.28 -55.85 16 25 Si 0.96 44.00 29.55 68.60 2.03 46.03 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 29 C 0.05 1.41 10.92 85.24 0.93 2.34 16 30 N -0.33 -9.07 12.58 -57.02 -0.72 -9.79 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.06 2.01 7.88 -2.39 -0.02 1.99 16 36 H 0.09 2.26 7.39 -2.39 -0.02 2.24 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 1.58 8.11 -2.39 -0.02 1.56 16 39 H 0.07 1.55 5.38 -2.39 -0.01 1.54 16 40 H 0.07 2.78 6.30 -2.39 -0.02 2.76 16 41 H 0.09 2.78 7.87 -2.38 -0.02 2.76 16 42 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.11 2.25 7.89 -2.39 -0.02 2.23 16 45 H 0.07 2.19 6.97 -2.38 -0.02 2.17 16 46 H 0.09 2.18 8.05 -2.38 -0.02 2.16 16 47 H 0.08 2.74 4.70 -2.39 -0.01 2.73 16 48 H 0.37 18.85 7.55 -92.70 -0.70 18.15 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.20 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -69.77 398.07 3.73 -66.04 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: 0.25 Total: 44.70 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 7.67 Total: -0.32 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -6.18 Total: -132.15 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.77 3.73 -66.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086995313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.791 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds