Wall clock time and date at job start Wed Apr 1 2020 03:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38547 * 120.01803 * 2 1 4 4 C 1.40076 * 117.81358 * 179.74399 * 3 2 1 5 5 C 1.48140 * 121.14197 * 180.23285 * 4 3 2 6 6 O 1.21519 * 119.99891 * 0.30182 * 5 4 3 7 7 N 1.34772 * 119.99816 * 180.29309 * 5 4 3 8 8 C 1.46507 * 119.99847 * 179.97438 * 7 5 4 9 9 H 1.08996 * 112.86583 * 25.33807 * 8 7 5 10 10 C 1.54148 * 113.63660 * 254.06658 * 8 7 5 11 11 H 1.08999 * 114.25115 * 26.68668 * 10 8 7 12 12 C 1.53066 * 111.68545 * 157.46602 * 10 8 7 13 13 C 1.53023 * 109.41046 * 146.40425 * 12 10 8 14 14 C 1.52942 * 108.92981 * 295.35559 * 13 12 10 15 15 N 1.44305 * 109.54988 * 57.09113 * 14 13 12 16 16 C 1.36936 * 117.24873 * 141.17515 * 15 14 13 17 17 H 1.08002 * 120.00086 * 207.62850 * 16 15 14 18 18 C 1.38812 * 120.00086 * 27.62531 * 16 15 14 19 19 N 1.31621 * 119.99928 * 16.93054 * 18 16 15 20 20 Si 1.86800 * 120.00150 * 196.93651 * 18 16 15 21 21 H 1.48494 * 109.47696 * 89.99633 * 20 18 16 22 22 H 1.48498 * 109.47055 * 209.99921 * 20 18 16 23 23 H 1.48505 * 109.46693 * 329.99385 * 20 18 16 24 24 C 1.45093 * 124.26278 * 320.50217 * 15 14 13 25 25 H 1.09000 * 112.25091 * 156.44888 * 24 15 14 26 26 C 1.53382 * 114.62757 * 286.89470 * 24 15 14 27 27 C 1.52994 * 113.69001 * 27.91913 * 26 24 15 28 28 C 1.52997 * 113.68553 * 256.78241 * 26 24 15 29 29 C 1.39758 * 117.71089 * 0.52355 * 4 3 2 30 30 N 1.31899 * 119.65460 * 359.72758 * 29 4 3 31 31 N 1.28275 * 122.32959 * 0.02562 * 30 29 4 32 32 H 1.09000 * 109.47164 * 269.72503 * 1 2 3 33 33 H 1.09003 * 109.47331 * 149.71948 * 1 2 3 34 34 H 1.09007 * 109.47023 * 29.72225 * 1 2 3 35 35 H 1.07995 * 121.08788 * 0.02562 * 3 2 1 36 36 H 0.96996 * 120.00304 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.47947 * 266.38494 * 12 10 8 38 38 H 1.09002 * 109.48044 * 26.41364 * 12 10 8 39 39 H 1.08999 * 109.56144 * 55.18815 * 13 12 10 40 40 H 1.09002 * 109.56283 * 175.40944 * 13 12 10 41 41 H 1.08999 * 109.40269 * 177.47514 * 14 13 12 42 42 H 1.09006 * 109.40073 * 297.30118 * 14 13 12 43 43 H 0.96999 * 119.99809 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47466 * 144.57578 * 27 26 24 45 45 H 1.09001 * 109.47355 * 264.57608 * 27 26 24 46 46 H 1.09004 * 109.47230 * 24.57183 * 27 26 24 47 47 H 1.08999 * 109.47431 * 303.46782 * 28 26 24 48 48 H 1.09003 * 109.47395 * 63.46914 * 28 26 24 49 49 H 1.09005 * 109.47315 * 183.46700 * 28 26 24 50 50 H 1.08006 * 120.17514 * 179.75634 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1458 0.0055 5 6 4.4141 2.3833 0.0111 6 8 3.8690 3.4693 0.0164 7 7 5.7596 2.3046 0.0104 8 6 6.5649 3.5284 0.0153 9 1 6.0396 4.3794 0.4488 10 6 7.2281 3.8373 -1.3415 11 1 6.6966 3.4317 -2.2023 12 6 7.5745 5.3221 -1.4768 13 6 8.8566 5.4725 -2.2985 14 6 10.0165 4.8396 -1.5284 15 7 9.7121 3.4575 -1.2465 16 6 10.7394 2.5571 -1.3421 17 1 10.5324 1.5256 -1.5862 18 6 12.0468 2.9702 -1.1253 19 7 12.2836 4.1112 -0.5134 20 14 13.4701 1.9068 -1.7022 21 1 13.8424 2.2874 -3.0884 22 1 14.6349 2.1089 -0.8036 23 1 13.0644 0.4785 -1.6730 24 6 8.4007 2.9726 -0.8586 25 1 8.2680 1.9149 -1.0860 26 6 7.9850 3.3302 0.5738 27 6 8.6251 4.6178 1.0963 28 6 8.1015 2.1638 1.5570 29 6 4.2017 -0.1156 -0.0006 30 7 3.4482 -1.1982 -0.0058 31 7 2.1667 -1.1420 -0.0059 32 1 -0.3633 -0.0049 1.0276 33 1 -0.3634 -0.8875 -0.5182 34 1 -0.3633 0.8925 -0.5095 35 1 1.6783 2.1452 0.0004 36 1 6.1947 1.4377 0.0059 37 1 6.7581 5.8415 -1.9786 38 1 7.7247 5.7520 -0.4865 39 1 8.7368 4.9680 -3.2573 40 1 9.0611 6.5300 -2.4656 41 1 10.9255 4.9025 -2.1267 42 1 10.1629 5.3748 -0.5901 43 1 13.1971 4.4000 -0.3623 44 1 7.9161 5.1420 1.7371 45 1 9.5197 4.3725 1.6688 46 1 8.8958 5.2563 0.2554 47 1 7.5091 1.3233 1.1955 48 1 9.1457 1.8627 1.6414 49 1 7.7328 2.4744 2.5346 50 1 5.2782 -0.2035 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087283248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:12 Heat of formation + Delta-G solvation = 82.308827 kcal Electronic energy + Delta-G solvation = -31372.520543 eV Core-core repulsion = 27402.273082 eV Total energy + Delta-G solvation = -3970.247461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62120 -40.91284 -39.02826 -35.59348 -34.44271 -33.82651 -33.08125 -32.55297 -30.44220 -29.91104 -28.69073 -26.94635 -26.16534 -25.31780 -24.37902 -23.86479 -22.55004 -21.28744 -20.73492 -19.46735 -18.40363 -18.03028 -17.24209 -16.89569 -16.50615 -15.88653 -15.74947 -15.14829 -14.94074 -14.72238 -14.39802 -14.00064 -13.88230 -13.84406 -13.62799 -13.32141 -13.15358 -12.83463 -12.77647 -12.54838 -12.23523 -12.17718 -11.70676 -11.41954 -11.34775 -11.23818 -11.06906 -10.93614 -10.82372 -10.67703 -10.57731 -10.53006 -10.23759 -10.13004 -10.06613 -9.93734 -9.76581 -9.61790 -9.45167 -9.11230 -8.77668 -8.37929 -6.68152 -5.81986 -3.28791 0.00956 0.47943 2.52551 2.82031 3.30142 3.33774 3.41825 3.42065 3.58250 3.96134 4.10256 4.28126 4.44677 4.45187 4.72983 4.85262 4.95189 4.99770 5.11182 5.22522 5.30122 5.33566 5.43311 5.43480 5.56027 5.57034 5.64886 5.75642 5.78595 5.86982 5.89820 6.03718 6.11790 6.17127 6.22487 6.36123 6.38570 6.43902 6.53006 6.56585 6.70173 6.73234 6.76956 6.88989 7.03927 7.14445 7.36235 7.39174 7.72024 7.80569 7.95609 8.29862 8.43077 9.22356 9.87859 10.27753 11.22046 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002902 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.919629 B = 9646.028503 C =10528.660033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.066 3.934 3 C -0.060 4.060 4 C -0.123 4.123 5 C 0.561 3.439 6 O -0.527 6.527 7 N -0.692 5.692 8 C 0.121 3.879 9 H 0.098 0.902 10 C -0.128 4.128 11 H 0.070 0.930 12 C -0.106 4.106 13 C -0.145 4.145 14 C 0.180 3.820 15 N -0.567 5.567 16 C -0.268 4.268 17 H 0.063 0.937 18 C 0.010 3.990 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.190 3.810 25 H 0.071 0.929 26 C -0.111 4.111 27 C -0.134 4.134 28 C -0.126 4.126 29 C 0.063 3.937 30 N -0.235 5.235 31 N -0.231 5.231 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.163 0.837 36 H 0.401 0.599 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.253 0.747 44 H 0.033 0.967 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.038 0.962 48 H 0.067 0.933 49 H 0.043 0.957 50 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.033 -2.659 1.884 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.079 4.079 3 C -0.090 4.090 4 C -0.138 4.138 5 C 0.345 3.655 6 O -0.403 6.403 7 N -0.342 5.342 8 C 0.016 3.984 9 H 0.116 0.884 10 C -0.150 4.150 11 H 0.088 0.912 12 C -0.144 4.144 13 C -0.184 4.184 14 C 0.055 3.945 15 N -0.285 5.285 16 C -0.398 4.398 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.541 5.541 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.079 3.921 25 H 0.089 0.911 26 C -0.116 4.116 27 C -0.190 4.190 28 C -0.183 4.183 29 C -0.102 4.102 30 N -0.075 5.075 31 N -0.075 5.075 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.181 0.819 36 H 0.238 0.762 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.057 0.943 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.271 -3.440 1.905 18.689 hybrid contribution 1.204 0.532 -0.200 1.331 sum -17.067 -2.909 1.706 17.397 Atomic orbital electron populations 1.20722 0.86825 1.04418 1.03965 1.22974 0.99459 0.89884 0.95571 1.22504 0.93147 1.00694 0.92621 1.21337 0.95363 0.95384 1.01678 1.17864 0.82496 0.87773 0.77350 1.90789 1.71802 1.28318 1.49441 1.45710 1.05004 1.10615 1.72899 1.22475 0.91225 0.86138 0.98565 0.88387 1.23281 0.98255 0.97511 0.95908 0.91198 1.21528 0.97513 0.93880 1.01433 1.22092 0.97065 0.99767 0.99464 1.20384 0.93542 0.83614 0.96955 1.42894 1.04332 1.04715 1.76517 1.19233 0.85982 0.92567 1.42003 0.91876 1.25006 0.97974 0.97422 0.98491 1.70073 1.19280 1.22564 1.42228 0.86354 0.82368 0.80121 0.78265 1.21488 1.21834 1.20493 1.21335 0.85269 0.95322 0.90186 0.91142 1.23008 0.92274 0.97088 0.99183 1.22003 0.99301 0.95736 1.01997 1.21585 1.02156 0.96675 0.97921 1.24568 1.02651 0.88824 0.94191 1.73070 0.99134 1.26755 1.08581 1.72847 1.01948 1.24974 1.07740 0.89526 0.89613 0.89897 0.81950 0.76162 0.93446 0.90343 0.92902 0.92896 0.91525 0.94265 0.93643 0.94824 0.91901 0.88577 0.94271 0.91408 0.93775 0.80743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.19 36.01 0.37 -0.20 16 2 C 0.07 0.62 6.86 -82.45 -0.57 0.05 16 3 C -0.06 -0.58 9.43 -38.78 -0.37 -0.95 16 4 C -0.12 -1.37 5.92 -104.57 -0.62 -1.99 16 5 C 0.56 7.37 7.80 -12.20 -0.10 7.27 16 6 O -0.53 -8.47 16.11 5.35 0.09 -8.39 16 7 N -0.69 -8.79 4.70 -53.64 -0.25 -9.04 16 8 C 0.12 1.81 3.31 -66.88 -0.22 1.59 16 9 H 0.10 1.57 7.39 -51.93 -0.38 1.19 16 10 C -0.13 -2.11 4.13 -89.73 -0.37 -2.48 16 11 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 12 C -0.11 -1.74 5.18 -26.69 -0.14 -1.87 16 13 C -0.15 -2.62 6.03 -26.75 -0.16 -2.78 16 14 C 0.18 3.97 3.94 -5.24 -0.02 3.95 16 15 N -0.57 -12.71 2.61 -167.92 -0.44 -13.15 16 16 C -0.27 -6.77 9.41 -15.06 -0.14 -6.91 16 17 H 0.06 1.59 7.86 -52.49 -0.41 1.18 16 18 C 0.01 0.27 4.77 -17.43 -0.08 0.19 16 19 N -0.90 -24.23 11.08 55.49 0.61 -23.62 16 20 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C 0.19 3.51 3.42 -68.24 -0.23 3.27 16 25 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 26 C -0.11 -1.84 1.34 -153.86 -0.21 -2.05 16 27 C -0.13 -2.38 7.38 37.15 0.27 -2.11 16 28 C -0.13 -1.91 8.90 37.16 0.33 -1.58 16 29 C 0.06 0.66 10.84 -16.95 -0.18 0.48 16 30 N -0.24 -2.93 11.49 30.78 0.35 -2.57 16 31 N -0.23 -2.77 11.40 33.58 0.38 -2.38 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.16 1.35 7.80 -52.49 -0.41 0.94 16 36 H 0.40 4.35 4.96 -40.82 -0.20 4.15 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.28 4.71 -51.93 -0.24 1.04 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.67 6.57 -51.93 -0.34 1.33 16 42 H 0.04 0.93 5.52 -51.93 -0.29 0.64 16 43 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 46 H 0.10 1.82 1.92 -51.93 -0.10 1.72 16 47 H 0.04 0.49 5.99 -51.93 -0.31 0.18 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.18 1.41 6.54 -52.48 -0.34 1.07 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -29.79 382.06 -8.18 -37.98 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.22 Total: 5.75 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.43 Total: -6.11 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.66 Total: -50.77 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.79 -8.18 -37.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.285 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds