Wall clock time and date at job start Wed Apr 1 2020 03:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38547 * 120.01803 * 2 1 4 4 C 1.40076 * 117.81358 * 179.74399 * 3 2 1 5 5 C 1.48140 * 121.14197 * 180.23285 * 4 3 2 6 6 O 1.21519 * 119.99891 * 0.30182 * 5 4 3 7 7 N 1.34772 * 119.99816 * 180.29309 * 5 4 3 8 8 C 1.46507 * 119.99847 * 179.97438 * 7 5 4 9 9 H 1.08996 * 112.86583 * 25.33807 * 8 7 5 10 10 C 1.54148 * 113.63660 * 254.06658 * 8 7 5 11 11 H 1.08999 * 114.25115 * 26.68668 * 10 8 7 12 12 C 1.53066 * 111.68545 * 157.46602 * 10 8 7 13 13 C 1.53023 * 109.41046 * 146.40425 * 12 10 8 14 14 C 1.52942 * 108.92981 * 295.35559 * 13 12 10 15 15 N 1.44305 * 109.54988 * 57.09113 * 14 13 12 16 16 C 1.36936 * 117.24873 * 141.17515 * 15 14 13 17 17 H 1.08002 * 120.00086 * 207.62850 * 16 15 14 18 18 C 1.38812 * 120.00086 * 27.62531 * 16 15 14 19 19 N 1.31621 * 119.99928 * 16.93054 * 18 16 15 20 20 Si 1.86800 * 120.00150 * 196.93651 * 18 16 15 21 21 H 1.48494 * 109.47696 * 89.99633 * 20 18 16 22 22 H 1.48498 * 109.47055 * 209.99921 * 20 18 16 23 23 H 1.48505 * 109.46693 * 329.99385 * 20 18 16 24 24 C 1.45093 * 124.26278 * 320.50217 * 15 14 13 25 25 H 1.09000 * 112.25091 * 156.44888 * 24 15 14 26 26 C 1.53382 * 114.62757 * 286.89470 * 24 15 14 27 27 C 1.52994 * 113.69001 * 27.91913 * 26 24 15 28 28 C 1.52997 * 113.68553 * 256.78241 * 26 24 15 29 29 C 1.39758 * 117.71089 * 0.52355 * 4 3 2 30 30 N 1.31899 * 119.65460 * 359.72758 * 29 4 3 31 31 N 1.28275 * 122.32959 * 0.02562 * 30 29 4 32 32 H 1.09000 * 109.47164 * 269.72503 * 1 2 3 33 33 H 1.09003 * 109.47331 * 149.71948 * 1 2 3 34 34 H 1.09007 * 109.47023 * 29.72225 * 1 2 3 35 35 H 1.07995 * 121.08788 * 0.02562 * 3 2 1 36 36 H 0.96996 * 120.00304 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.47947 * 266.38494 * 12 10 8 38 38 H 1.09002 * 109.48044 * 26.41364 * 12 10 8 39 39 H 1.08999 * 109.56144 * 55.18815 * 13 12 10 40 40 H 1.09002 * 109.56283 * 175.40944 * 13 12 10 41 41 H 1.08999 * 109.40269 * 177.47514 * 14 13 12 42 42 H 1.09006 * 109.40073 * 297.30118 * 14 13 12 43 43 H 0.96999 * 119.99809 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47466 * 144.57578 * 27 26 24 45 45 H 1.09001 * 109.47355 * 264.57608 * 27 26 24 46 46 H 1.09004 * 109.47230 * 24.57183 * 27 26 24 47 47 H 1.08999 * 109.47431 * 303.46782 * 28 26 24 48 48 H 1.09003 * 109.47395 * 63.46914 * 28 26 24 49 49 H 1.09005 * 109.47315 * 183.46700 * 28 26 24 50 50 H 1.08006 * 120.17514 * 179.75634 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1458 0.0055 5 6 4.4141 2.3833 0.0111 6 8 3.8690 3.4693 0.0164 7 7 5.7596 2.3046 0.0104 8 6 6.5649 3.5284 0.0153 9 1 6.0396 4.3794 0.4488 10 6 7.2281 3.8373 -1.3415 11 1 6.6966 3.4317 -2.2023 12 6 7.5745 5.3221 -1.4768 13 6 8.8566 5.4725 -2.2985 14 6 10.0165 4.8396 -1.5284 15 7 9.7121 3.4575 -1.2465 16 6 10.7394 2.5571 -1.3421 17 1 10.5324 1.5256 -1.5862 18 6 12.0468 2.9702 -1.1253 19 7 12.2836 4.1112 -0.5134 20 14 13.4701 1.9068 -1.7022 21 1 13.8424 2.2874 -3.0884 22 1 14.6349 2.1089 -0.8036 23 1 13.0644 0.4785 -1.6730 24 6 8.4007 2.9726 -0.8586 25 1 8.2680 1.9149 -1.0860 26 6 7.9850 3.3302 0.5738 27 6 8.6251 4.6178 1.0963 28 6 8.1015 2.1638 1.5570 29 6 4.2017 -0.1156 -0.0006 30 7 3.4482 -1.1982 -0.0058 31 7 2.1667 -1.1420 -0.0059 32 1 -0.3633 -0.0049 1.0276 33 1 -0.3634 -0.8875 -0.5182 34 1 -0.3633 0.8925 -0.5095 35 1 1.6783 2.1452 0.0004 36 1 6.1947 1.4377 0.0059 37 1 6.7581 5.8415 -1.9786 38 1 7.7247 5.7520 -0.4865 39 1 8.7368 4.9680 -3.2573 40 1 9.0611 6.5300 -2.4656 41 1 10.9255 4.9025 -2.1267 42 1 10.1629 5.3748 -0.5901 43 1 13.1971 4.4000 -0.3623 44 1 7.9161 5.1420 1.7371 45 1 9.5197 4.3725 1.6688 46 1 8.8958 5.2563 0.2554 47 1 7.5091 1.3233 1.1955 48 1 9.1457 1.8627 1.6414 49 1 7.7328 2.4744 2.5346 50 1 5.2782 -0.2035 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087283248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:11 Heat of formation + Delta-G solvation = 64.863747 kcal Electronic energy + Delta-G solvation = -31373.277019 eV Core-core repulsion = 27402.273082 eV Total energy + Delta-G solvation = -3971.003936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.60976 -42.09032 -40.16235 -37.12348 -35.30394 -34.86805 -34.44978 -33.70819 -32.24899 -31.33005 -29.30405 -28.30647 -27.32534 -26.99541 -25.46805 -24.81302 -24.10571 -22.73278 -21.77559 -20.86091 -19.50660 -19.09377 -18.66853 -18.31810 -17.36059 -17.14786 -16.65493 -16.55667 -16.24559 -15.97097 -15.78717 -15.36778 -15.33753 -14.77459 -14.64059 -14.49007 -14.17643 -14.08996 -13.81308 -13.73448 -13.59203 -13.23685 -13.17464 -12.94464 -12.84118 -12.74037 -12.57194 -12.45178 -12.11590 -12.06317 -12.00832 -11.71893 -11.58675 -11.39622 -11.35298 -11.14423 -10.98075 -10.85005 -10.75429 -10.60922 -10.31716 -9.97765 -8.52330 -7.77351 -5.25591 -0.82723 -0.25927 1.46768 1.50112 1.56153 1.56354 1.78652 2.46679 2.54597 2.88716 3.13830 3.32806 3.33986 3.43994 3.51349 3.67045 3.73101 3.78510 3.97481 4.04439 4.11672 4.30074 4.30779 4.41568 4.47925 4.58400 4.63564 4.68170 4.73378 4.75907 4.80634 4.84287 4.88876 4.96452 4.99667 5.01724 5.10563 5.13361 5.17726 5.22920 5.26858 5.32104 5.39262 5.48785 5.58659 5.64152 5.69980 5.76828 6.02155 6.31049 6.47076 6.92965 7.28052 7.50797 8.07634 8.38432 9.22880 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002902 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.919629 B = 9646.028503 C =10528.660033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.070 3.930 3 C -0.054 4.054 4 C -0.132 4.132 5 C 0.569 3.431 6 O -0.555 6.555 7 N -0.686 5.686 8 C 0.143 3.857 9 H 0.097 0.903 10 C -0.123 4.123 11 H 0.075 0.925 12 C -0.102 4.102 13 C -0.135 4.135 14 C 0.189 3.811 15 N -0.579 5.579 16 C -0.268 4.268 17 H 0.062 0.938 18 C -0.038 4.038 19 N -0.924 5.924 20 Si 0.952 3.048 21 H -0.291 1.291 22 H -0.299 1.299 23 H -0.271 1.271 24 C 0.174 3.826 25 H 0.073 0.927 26 C -0.109 4.109 27 C -0.129 4.129 28 C -0.123 4.123 29 C 0.066 3.934 30 N -0.263 5.263 31 N -0.257 5.257 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.179 0.821 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.027 0.973 42 H 0.021 0.979 43 H 0.246 0.754 44 H 0.055 0.945 45 H 0.030 0.970 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.039 0.961 49 H 0.055 0.945 50 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.849 -3.101 1.809 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.076 4.076 3 C -0.084 4.084 4 C -0.147 4.147 5 C 0.355 3.645 6 O -0.433 6.433 7 N -0.337 5.337 8 C 0.038 3.962 9 H 0.115 0.885 10 C -0.144 4.144 11 H 0.093 0.907 12 C -0.140 4.140 13 C -0.174 4.174 14 C 0.064 3.936 15 N -0.297 5.297 16 C -0.398 4.398 17 H 0.080 0.920 18 C -0.235 4.235 19 N -0.570 5.570 20 Si 0.782 3.218 21 H -0.218 1.218 22 H -0.226 1.226 23 H -0.196 1.196 24 C 0.065 3.935 25 H 0.091 0.909 26 C -0.113 4.113 27 C -0.186 4.186 28 C -0.180 4.180 29 C -0.100 4.100 30 N -0.102 5.102 31 N -0.100 5.100 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.197 0.803 36 H 0.250 0.750 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.058 0.942 49 H 0.075 0.925 50 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -21.120 -3.937 1.828 21.561 hybrid contribution 1.996 0.665 -0.181 2.111 sum -19.124 -3.272 1.647 19.472 Atomic orbital electron populations 1.20887 0.84107 1.05631 1.05228 1.23499 1.01111 0.88947 0.94005 1.22785 0.92780 1.01552 0.91245 1.21182 0.95780 0.94520 1.03170 1.18019 0.82305 0.87952 0.76246 1.90779 1.72263 1.29523 1.50774 1.45582 1.04979 1.10332 1.72804 1.22085 0.90278 0.86991 0.96889 0.88473 1.23234 0.97113 0.97157 0.96917 0.90665 1.21502 0.97026 0.94095 1.01368 1.21945 0.96341 1.00274 0.98793 1.20116 0.93714 0.83856 0.95904 1.43036 1.05116 1.04360 1.77183 1.19493 0.86945 0.92948 1.40462 0.92036 1.25588 0.99905 0.98594 0.99384 1.70208 1.18893 1.23982 1.43869 0.85501 0.79816 0.79250 0.77238 1.21823 1.22618 1.19613 1.21614 0.84088 0.95922 0.91897 0.90878 1.22850 0.93282 0.96940 0.98180 1.21913 0.98644 0.96469 1.01556 1.21546 1.00951 0.97070 0.98438 1.24813 1.03497 0.88247 0.93439 1.73016 0.99700 1.27694 1.09809 1.72782 1.02041 1.26437 1.08724 0.88047 0.89374 0.87727 0.80346 0.75002 0.91237 0.90264 0.93266 0.91233 0.95439 0.96188 0.94434 0.92577 0.95050 0.89674 0.91555 0.94212 0.92546 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.19 71.24 0.73 -0.10 16 2 C 0.07 1.15 6.86 42.62 0.29 1.44 16 3 C -0.05 -0.90 9.43 22.79 0.21 -0.69 16 4 C -0.13 -2.61 5.92 -19.83 -0.12 -2.73 16 5 C 0.57 13.42 7.80 86.87 0.68 14.09 16 6 O -0.55 -16.35 16.11 -3.78 -0.06 -16.41 16 7 N -0.69 -15.55 4.70 -441.90 -2.08 -17.62 16 8 C 0.14 3.96 3.31 45.67 0.15 4.11 16 9 H 0.10 2.83 7.39 -2.39 -0.02 2.81 16 10 C -0.12 -3.80 4.13 -10.22 -0.04 -3.84 16 11 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 12 C -0.10 -3.15 5.18 30.62 0.16 -2.99 16 13 C -0.13 -4.77 6.03 30.58 0.18 -4.59 16 14 C 0.19 8.55 3.94 86.77 0.34 8.90 16 15 N -0.58 -26.23 2.61 -685.17 -1.79 -28.02 16 16 C -0.27 -13.74 9.41 84.03 0.79 -12.95 16 17 H 0.06 3.12 7.86 -2.91 -0.02 3.10 16 18 C -0.04 -2.04 4.77 84.86 0.40 -1.64 16 19 N -0.92 -51.82 11.08 21.65 0.24 -51.58 16 20 Si 0.95 43.72 29.59 68.60 2.03 45.75 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C 0.17 6.27 3.42 45.54 0.16 6.43 16 25 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 26 C -0.11 -3.47 1.34 -51.76 -0.07 -3.54 16 27 C -0.13 -4.57 7.38 71.98 0.53 -4.04 16 28 C -0.12 -3.56 8.90 71.98 0.64 -2.92 16 29 C 0.07 1.26 10.84 85.05 0.92 2.18 16 30 N -0.26 -6.17 11.49 -56.52 -0.65 -6.82 16 31 N -0.26 -5.75 11.40 -47.68 -0.54 -6.29 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.42 8.09 -2.38 -0.02 0.41 16 35 H 0.18 2.39 7.80 -2.91 -0.02 2.37 16 36 H 0.41 7.73 4.96 -92.71 -0.46 7.27 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.46 4.71 -2.39 -0.01 2.44 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.03 1.43 6.57 -2.39 -0.02 1.41 16 42 H 0.02 0.99 5.52 -2.38 -0.01 0.98 16 43 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.03 1.28 8.04 -2.39 -0.02 1.26 16 46 H 0.09 3.23 1.92 -2.39 0.00 3.23 16 47 H 0.07 1.52 5.99 -2.39 -0.01 1.51 16 48 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 50 H 0.20 2.67 6.54 -2.91 -0.02 2.65 16 Total: -1.00 -66.01 382.06 3.63 -62.38 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.52 Total: 21.47 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.96 Total: -2.87 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.82 Total: -110.33 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.06 Total: -16.41 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.01 3.63 -62.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.249 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds