Wall clock time and date at job start Wed Apr 1 2020 03:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38544 * 120.01936 * 2 1 4 4 C 1.40075 * 117.82142 * 180.02562 * 3 2 1 5 5 C 1.48137 * 121.14259 * 180.02562 * 4 3 2 6 6 O 1.21514 * 120.00679 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99684 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00426 * 179.97438 * 7 5 4 9 9 H 1.09005 * 113.34070 * 28.42119 * 8 7 5 10 10 C 1.49998 * 114.12642 * 255.49470 * 8 7 5 11 11 H 1.09000 * 112.50359 * 170.15830 * 10 8 7 12 12 C 1.51198 * 126.17649 * 27.76223 * 10 8 7 13 13 C 1.54096 * 106.19751 * 198.57041 * 12 10 8 14 14 C 1.52492 * 112.66822 * 55.43331 * 13 12 10 15 15 N 1.49346 * 111.81284 * 312.95455 * 14 13 12 16 16 C 1.36933 * 123.72127 * 231.85290 * 15 14 13 17 17 H 1.08001 * 119.99875 * 208.86852 * 16 15 14 18 18 C 1.38811 * 120.00288 * 28.86394 * 16 15 14 19 19 N 1.31624 * 120.00040 * 17.28935 * 18 16 15 20 20 Si 1.86806 * 120.00249 * 197.29026 * 18 16 15 21 21 H 1.48505 * 109.46735 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47361 * 119.99760 * 20 18 16 23 23 H 1.48502 * 109.46955 * 240.00317 * 20 18 16 24 24 C 1.45379 * 113.10792 * 52.24562 * 15 14 13 25 25 H 1.08996 * 112.09259 * 59.34044 * 24 15 14 26 26 C 1.49964 * 126.21295 * 203.75903 * 24 15 14 27 27 C 1.53004 * 114.08471 * 253.22773 * 26 24 15 28 28 C 1.53001 * 114.08777 * 25.65528 * 26 24 15 29 29 C 1.39761 * 117.70450 * 0.27396 * 4 3 2 30 30 N 1.31899 * 119.65787 * 359.43568 * 29 4 3 31 31 N 1.28277 * 122.32609 * 0.59080 * 30 29 4 32 32 H 1.08997 * 109.47042 * 89.99902 * 1 2 3 33 33 H 1.09001 * 109.47057 * 210.00331 * 1 2 3 34 34 H 1.09001 * 109.46889 * 330.00297 * 1 2 3 35 35 H 1.08008 * 121.08707 * 0.04140 * 3 2 1 36 36 H 0.97008 * 119.99826 * 359.97438 * 7 5 4 37 37 H 1.08999 * 110.10458 * 317.74020 * 12 10 8 38 38 H 1.09006 * 110.10212 * 79.28630 * 12 10 8 39 39 H 1.09001 * 108.84261 * 176.26265 * 13 12 10 40 40 H 1.09007 * 108.83919 * 294.61726 * 13 12 10 41 41 H 1.08998 * 108.99738 * 73.83412 * 14 13 12 42 42 H 1.08998 * 109.00383 * 192.67923 * 14 13 12 43 43 H 0.96994 * 120.00077 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.47268 * 60.00307 * 27 26 24 45 45 H 1.08997 * 109.47001 * 180.02562 * 27 26 24 46 46 H 1.09001 * 109.46984 * 300.00158 * 27 26 24 47 47 H 1.08999 * 109.47211 * 54.26678 * 28 26 24 48 48 H 1.09000 * 109.47239 * 174.26953 * 28 26 24 49 49 H 1.09001 * 109.46519 * 294.27121 * 28 26 24 50 50 H 1.08007 * 120.16810 * 179.71436 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1459 -0.0006 5 6 4.4140 2.3834 0.0000 6 8 3.8689 3.4695 0.0004 7 7 5.7595 2.3048 -0.0011 8 6 6.5648 3.5286 -0.0011 9 1 6.0673 4.3730 0.4760 10 6 7.1873 3.8529 -1.3268 11 1 7.6344 4.8468 -1.3458 12 6 6.6480 3.4645 -2.6849 13 6 7.8276 3.5916 -3.6682 14 6 9.0387 2.7685 -3.2428 15 7 9.3625 2.9637 -1.7980 16 6 10.6071 3.3001 -1.3366 17 1 10.9197 2.9895 -0.3506 18 6 11.4671 4.0403 -2.1362 19 7 10.9962 4.7041 -3.1707 20 14 13.2928 4.0945 -1.7441 21 1 13.5648 3.2706 -0.5389 22 1 14.0624 3.5579 -2.8952 23 1 13.7022 5.4984 -1.4861 24 6 8.2207 2.7511 -0.9235 25 1 7.8127 1.7450 -1.0194 26 6 8.0405 3.3199 0.4523 27 6 8.2091 2.2971 1.5778 28 6 8.8086 4.6204 0.6960 29 6 4.2017 -0.1155 -0.0070 30 7 3.4483 -1.1981 -0.0010 31 7 2.1667 -1.1420 -0.0004 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.6782 2.1452 0.0007 36 1 6.1947 1.4378 -0.0018 37 1 6.2865 2.4364 -2.6645 38 1 5.8420 4.1388 -2.9748 39 1 7.5025 3.2566 -4.6532 40 1 8.1197 4.6398 -3.7338 41 1 8.8328 1.7138 -3.4254 42 1 9.8999 3.0701 -3.8388 43 1 11.5972 5.2210 -3.7296 44 1 9.2118 1.8720 1.5353 45 1 8.0627 2.7881 2.5398 46 1 7.4723 1.5025 1.4600 47 1 8.5474 5.3464 -0.0739 48 1 8.5460 5.0194 1.6758 49 1 9.8798 4.4219 0.6597 50 1 5.2781 -0.2033 -0.0123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087283249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:15 Heat of formation + Delta-G solvation = 94.802342 kcal Electronic energy + Delta-G solvation = -31595.837967 eV Core-core repulsion = 27626.132265 eV Total energy + Delta-G solvation = -3969.705701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.66566 -41.05858 -38.89847 -35.33205 -34.44377 -33.81774 -33.11175 -32.68949 -30.27255 -29.37597 -28.67237 -27.10064 -26.15751 -25.55446 -24.37602 -23.93742 -22.40732 -21.04017 -20.59217 -19.19274 -18.53664 -18.24809 -17.45172 -16.72811 -16.54070 -15.73920 -15.57673 -14.97555 -14.85324 -14.66022 -14.13056 -13.92963 -13.84262 -13.79670 -13.69770 -13.37079 -13.25621 -12.81476 -12.75632 -12.62423 -12.47282 -12.04963 -11.60511 -11.37040 -11.32386 -11.19179 -11.04514 -10.96965 -10.73276 -10.65245 -10.53594 -10.48303 -10.25526 -10.18643 -10.11005 -9.95101 -9.82674 -9.56474 -9.31586 -8.97074 -8.80235 -8.46070 -6.60302 -5.81084 -3.22737 0.03434 0.49841 2.56289 2.82829 3.32874 3.33388 3.42807 3.43077 3.59941 3.98039 4.12233 4.30329 4.43967 4.46893 4.64414 4.76246 4.92863 4.97962 5.13244 5.14422 5.23907 5.35396 5.40838 5.44905 5.52330 5.58778 5.78775 5.80501 5.82162 5.85361 5.89973 6.03732 6.05112 6.27319 6.28511 6.33708 6.38745 6.46265 6.55231 6.60363 6.67577 6.75594 6.89952 6.98513 7.01807 7.20304 7.36863 7.42204 7.64145 7.73995 7.99210 8.31570 8.38690 9.09707 9.77535 10.44728 11.26441 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.002893 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.763170 B = 9677.413640 C = 9860.452042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.066 3.934 3 C -0.060 4.060 4 C -0.122 4.122 5 C 0.562 3.438 6 O -0.524 6.524 7 N -0.689 5.689 8 C 0.135 3.865 9 H 0.097 0.903 10 C -0.167 4.167 11 H 0.108 0.892 12 C -0.085 4.085 13 C -0.121 4.121 14 C 0.154 3.846 15 N -0.571 5.571 16 C -0.234 4.234 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.145 3.855 25 H 0.044 0.956 26 C -0.062 4.062 27 C -0.135 4.135 28 C -0.117 4.117 29 C 0.062 3.938 30 N -0.236 5.236 31 N -0.232 5.232 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.163 0.837 36 H 0.400 0.600 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.067 0.933 41 H -0.003 1.003 42 H 0.098 0.902 43 H 0.252 0.748 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.037 0.963 49 H 0.084 0.916 50 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 -6.012 6.634 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.079 4.079 3 C -0.090 4.090 4 C -0.136 4.136 5 C 0.347 3.653 6 O -0.401 6.401 7 N -0.340 5.340 8 C 0.030 3.970 9 H 0.115 0.885 10 C -0.188 4.188 11 H 0.126 0.874 12 C -0.123 4.123 13 C -0.160 4.160 14 C 0.030 3.970 15 N -0.293 5.293 16 C -0.363 4.363 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.540 5.540 20 Si 0.725 3.275 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.219 1.219 24 C 0.036 3.964 25 H 0.062 0.938 26 C -0.063 4.063 27 C -0.192 4.192 28 C -0.174 4.174 29 C -0.103 4.103 30 N -0.076 5.076 31 N -0.075 5.075 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.181 0.819 36 H 0.237 0.763 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.015 0.985 42 H 0.116 0.884 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.056 0.944 49 H 0.103 0.897 50 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.108 -6.780 6.519 18.653 hybrid contribution 1.379 1.243 -0.070 1.858 sum -14.729 -5.537 6.449 17.006 Atomic orbital electron populations 1.20720 0.86835 1.04375 1.03998 1.22969 0.99449 0.89882 0.95556 1.22505 0.93147 1.00699 0.92614 1.21335 0.95362 0.95371 1.01577 1.17810 0.82376 0.87765 0.77383 1.90792 1.71755 1.28282 1.49246 1.45616 1.05031 1.10260 1.73074 1.21685 0.90623 0.85973 0.98738 0.88485 1.23340 0.99970 1.03009 0.92473 0.87379 1.21044 0.97145 0.98938 0.95148 1.21791 0.95475 1.02765 0.95979 1.21065 0.97126 0.92984 0.85847 1.44042 1.05239 1.79870 1.00105 1.18957 0.89317 1.26712 1.01286 0.91535 1.24961 0.98422 0.97134 0.99171 1.69947 1.33238 1.31659 1.19112 0.86342 0.86199 0.77256 0.77692 1.20375 1.21741 1.21865 1.21777 0.89729 0.93713 0.91163 0.93841 1.21866 0.92383 0.97514 0.94570 1.21701 1.01699 0.98039 0.97809 1.21613 1.01984 0.94192 0.99599 1.24548 1.02590 0.88854 0.94272 1.73064 0.99147 1.26747 1.08603 1.72843 1.01934 1.24975 1.07795 0.89501 0.89640 0.89904 0.81942 0.76281 0.93883 0.94074 0.94153 0.91469 0.98538 0.88397 0.93826 0.91828 0.92902 0.93647 0.91628 0.94350 0.89682 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.19 36.00 0.37 -0.22 16 2 C 0.07 0.63 6.86 -82.46 -0.57 0.07 16 3 C -0.06 -0.60 9.43 -38.78 -0.37 -0.96 16 4 C -0.12 -1.38 5.92 -104.57 -0.62 -2.00 16 5 C 0.56 7.52 7.80 -12.19 -0.10 7.42 16 6 O -0.52 -8.60 16.17 5.35 0.09 -8.51 16 7 N -0.69 -8.85 4.21 -58.53 -0.25 -9.10 16 8 C 0.13 2.05 3.89 -71.84 -0.28 1.77 16 9 H 0.10 1.55 7.61 -51.93 -0.40 1.16 16 10 C -0.17 -2.97 2.97 -95.83 -0.29 -3.26 16 11 H 0.11 2.22 5.88 -51.93 -0.31 1.92 16 12 C -0.08 -1.52 5.94 -27.07 -0.16 -1.68 16 13 C -0.12 -2.42 5.90 -26.42 -0.16 -2.57 16 14 C 0.15 3.44 5.82 -2.72 -0.02 3.43 16 15 N -0.57 -12.84 2.92 -168.64 -0.49 -13.33 16 16 C -0.23 -5.76 7.75 -15.06 -0.12 -5.88 16 17 H 0.07 1.64 7.22 -52.49 -0.38 1.26 16 18 C 0.00 0.04 5.10 -17.43 -0.09 -0.04 16 19 N -0.89 -24.09 11.18 55.49 0.62 -23.47 16 20 Si 0.89 20.65 29.59 -169.99 -5.03 15.62 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.14 2.65 2.92 -72.14 -0.21 2.44 16 25 H 0.04 0.77 6.60 -51.93 -0.34 0.43 16 26 C -0.06 -0.98 1.38 -159.14 -0.22 -1.20 16 27 C -0.14 -1.81 9.22 37.16 0.34 -1.47 16 28 C -0.12 -2.00 8.40 37.16 0.31 -1.69 16 29 C 0.06 0.67 10.84 -16.95 -0.18 0.49 16 30 N -0.24 -2.95 11.49 30.78 0.35 -2.59 16 31 N -0.23 -2.79 11.40 33.58 0.38 -2.41 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.16 1.39 7.80 -52.48 -0.41 0.98 16 36 H 0.40 4.42 4.38 -40.82 -0.18 4.24 16 37 H 0.04 0.73 7.97 -51.93 -0.41 0.32 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 42 H 0.10 2.49 5.71 -51.93 -0.30 2.19 16 43 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.52 6.32 -51.93 -0.33 0.19 16 47 H 0.06 1.24 5.92 -51.93 -0.31 0.93 16 48 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 1.65 6.04 -51.93 -0.31 1.33 16 50 H 0.17 1.43 6.54 -52.48 -0.34 1.09 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -29.57 386.28 -8.22 -37.79 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.37 Total: 5.56 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.34 Total: -5.37 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.62 Total: -50.91 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.57 -8.22 -37.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.594 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds