Wall clock time and date at job start Wed Apr 1 2020 03:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38544 * 120.01936 * 2 1 4 4 C 1.40075 * 117.82142 * 180.02562 * 3 2 1 5 5 C 1.48137 * 121.14259 * 180.02562 * 4 3 2 6 6 O 1.21514 * 120.00679 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99684 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00426 * 179.97438 * 7 5 4 9 9 H 1.09005 * 113.34070 * 28.42119 * 8 7 5 10 10 C 1.49998 * 114.12642 * 255.49470 * 8 7 5 11 11 H 1.09000 * 112.50359 * 170.15830 * 10 8 7 12 12 C 1.51198 * 126.17649 * 27.76223 * 10 8 7 13 13 C 1.54096 * 106.19751 * 198.57041 * 12 10 8 14 14 C 1.52492 * 112.66822 * 55.43331 * 13 12 10 15 15 N 1.49346 * 111.81284 * 312.95455 * 14 13 12 16 16 C 1.36933 * 123.72127 * 231.85290 * 15 14 13 17 17 H 1.08001 * 119.99875 * 208.86852 * 16 15 14 18 18 C 1.38811 * 120.00288 * 28.86394 * 16 15 14 19 19 N 1.31624 * 120.00040 * 17.28935 * 18 16 15 20 20 Si 1.86806 * 120.00249 * 197.29026 * 18 16 15 21 21 H 1.48505 * 109.46735 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47361 * 119.99760 * 20 18 16 23 23 H 1.48502 * 109.46955 * 240.00317 * 20 18 16 24 24 C 1.45379 * 113.10792 * 52.24562 * 15 14 13 25 25 H 1.08996 * 112.09259 * 59.34044 * 24 15 14 26 26 C 1.49964 * 126.21295 * 203.75903 * 24 15 14 27 27 C 1.53004 * 114.08471 * 253.22773 * 26 24 15 28 28 C 1.53001 * 114.08777 * 25.65528 * 26 24 15 29 29 C 1.39761 * 117.70450 * 0.27396 * 4 3 2 30 30 N 1.31899 * 119.65787 * 359.43568 * 29 4 3 31 31 N 1.28277 * 122.32609 * 0.59080 * 30 29 4 32 32 H 1.08997 * 109.47042 * 89.99902 * 1 2 3 33 33 H 1.09001 * 109.47057 * 210.00331 * 1 2 3 34 34 H 1.09001 * 109.46889 * 330.00297 * 1 2 3 35 35 H 1.08008 * 121.08707 * 0.04140 * 3 2 1 36 36 H 0.97008 * 119.99826 * 359.97438 * 7 5 4 37 37 H 1.08999 * 110.10458 * 317.74020 * 12 10 8 38 38 H 1.09006 * 110.10212 * 79.28630 * 12 10 8 39 39 H 1.09001 * 108.84261 * 176.26265 * 13 12 10 40 40 H 1.09007 * 108.83919 * 294.61726 * 13 12 10 41 41 H 1.08998 * 108.99738 * 73.83412 * 14 13 12 42 42 H 1.08998 * 109.00383 * 192.67923 * 14 13 12 43 43 H 0.96994 * 120.00077 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.47268 * 60.00307 * 27 26 24 45 45 H 1.08997 * 109.47001 * 180.02562 * 27 26 24 46 46 H 1.09001 * 109.46984 * 300.00158 * 27 26 24 47 47 H 1.08999 * 109.47211 * 54.26678 * 28 26 24 48 48 H 1.09000 * 109.47239 * 174.26953 * 28 26 24 49 49 H 1.09001 * 109.46519 * 294.27121 * 28 26 24 50 50 H 1.08007 * 120.16810 * 179.71436 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1459 -0.0006 5 6 4.4140 2.3834 0.0000 6 8 3.8689 3.4695 0.0004 7 7 5.7595 2.3048 -0.0011 8 6 6.5648 3.5286 -0.0011 9 1 6.0673 4.3730 0.4760 10 6 7.1873 3.8529 -1.3268 11 1 7.6344 4.8468 -1.3458 12 6 6.6480 3.4645 -2.6849 13 6 7.8276 3.5916 -3.6682 14 6 9.0387 2.7685 -3.2428 15 7 9.3625 2.9637 -1.7980 16 6 10.6071 3.3001 -1.3366 17 1 10.9197 2.9895 -0.3506 18 6 11.4671 4.0403 -2.1362 19 7 10.9962 4.7041 -3.1707 20 14 13.2928 4.0945 -1.7441 21 1 13.5648 3.2706 -0.5389 22 1 14.0624 3.5579 -2.8952 23 1 13.7022 5.4984 -1.4861 24 6 8.2207 2.7511 -0.9235 25 1 7.8127 1.7450 -1.0194 26 6 8.0405 3.3199 0.4523 27 6 8.2091 2.2971 1.5778 28 6 8.8086 4.6204 0.6960 29 6 4.2017 -0.1155 -0.0070 30 7 3.4483 -1.1981 -0.0010 31 7 2.1667 -1.1420 -0.0004 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.6782 2.1452 0.0007 36 1 6.1947 1.4378 -0.0018 37 1 6.2865 2.4364 -2.6645 38 1 5.8420 4.1388 -2.9748 39 1 7.5025 3.2566 -4.6532 40 1 8.1197 4.6398 -3.7338 41 1 8.8328 1.7138 -3.4254 42 1 9.8999 3.0701 -3.8388 43 1 11.5972 5.2210 -3.7296 44 1 9.2118 1.8720 1.5353 45 1 8.0627 2.7881 2.5398 46 1 7.4723 1.5025 1.4600 47 1 8.5474 5.3464 -0.0739 48 1 8.5460 5.0194 1.6758 49 1 9.8798 4.4219 0.6597 50 1 5.2781 -0.2033 -0.0123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087283249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:14 Heat of formation + Delta-G solvation = 77.650798 kcal Electronic energy + Delta-G solvation = -31596.581714 eV Core-core repulsion = 27626.132265 eV Total energy + Delta-G solvation = -3970.449448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.77026 -42.13030 -40.04645 -36.91103 -35.27109 -34.79385 -34.67025 -33.86021 -32.04983 -30.75188 -29.29449 -28.41707 -27.58657 -26.96538 -25.57167 -24.84259 -23.94688 -22.35673 -21.92094 -20.64670 -19.83379 -19.22238 -18.58157 -18.29684 -17.36720 -16.96963 -16.62639 -16.41062 -15.93591 -15.92415 -15.63227 -15.39026 -15.28360 -14.87502 -14.67054 -14.49391 -14.27607 -14.09117 -13.94277 -13.80092 -13.49887 -13.22672 -13.15683 -12.93823 -12.78369 -12.69307 -12.54801 -12.27856 -12.10869 -12.07665 -12.04267 -11.77696 -11.59211 -11.47745 -11.38132 -11.22633 -10.83690 -10.82830 -10.73896 -10.64077 -10.24751 -10.04702 -8.43648 -7.76188 -5.17213 -0.81346 -0.24639 1.46459 1.51456 1.58013 1.58550 1.76576 2.48280 2.56034 2.89790 3.15024 3.25548 3.34534 3.40741 3.44949 3.49577 3.73858 3.74279 3.92172 4.10372 4.15363 4.29213 4.32041 4.38609 4.50938 4.57755 4.63574 4.65359 4.75171 4.76419 4.78451 4.84757 4.90611 4.98141 5.00488 5.06149 5.11528 5.13818 5.18496 5.21933 5.27490 5.32686 5.39547 5.50390 5.59891 5.65018 5.71157 5.79711 5.89472 6.30600 6.49381 6.95013 7.17818 7.52005 7.90784 8.56963 9.29840 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.002893 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.763170 B = 9677.413640 C = 9860.452042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.070 3.930 3 C -0.055 4.055 4 C -0.131 4.131 5 C 0.570 3.430 6 O -0.555 6.555 7 N -0.681 5.681 8 C 0.157 3.843 9 H 0.094 0.906 10 C -0.164 4.164 11 H 0.076 0.924 12 C -0.076 4.076 13 C -0.111 4.111 14 C 0.155 3.845 15 N -0.586 5.586 16 C -0.220 4.220 17 H 0.068 0.932 18 C -0.050 4.050 19 N -0.924 5.924 20 Si 0.947 3.053 21 H -0.268 1.268 22 H -0.299 1.299 23 H -0.299 1.299 24 C 0.135 3.865 25 H 0.063 0.937 26 C -0.058 4.058 27 C -0.131 4.131 28 C -0.112 4.112 29 C 0.067 3.933 30 N -0.262 5.262 31 N -0.256 5.256 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.411 0.589 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.008 0.992 42 H 0.063 0.937 43 H 0.243 0.757 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.040 0.960 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.930 -7.512 8.263 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.075 4.075 3 C -0.085 4.085 4 C -0.145 4.145 5 C 0.356 3.644 6 O -0.433 6.433 7 N -0.332 5.332 8 C 0.051 3.949 9 H 0.112 0.888 10 C -0.186 4.186 11 H 0.094 0.906 12 C -0.114 4.114 13 C -0.150 4.150 14 C 0.030 3.970 15 N -0.308 5.308 16 C -0.350 4.350 17 H 0.086 0.914 18 C -0.245 4.245 19 N -0.571 5.571 20 Si 0.777 3.223 21 H -0.192 1.192 22 H -0.227 1.227 23 H -0.227 1.227 24 C 0.028 3.972 25 H 0.081 0.919 26 C -0.059 4.059 27 C -0.188 4.188 28 C -0.170 4.170 29 C -0.099 4.099 30 N -0.101 5.101 31 N -0.099 5.099 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.195 0.805 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.026 0.974 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.181 -8.337 8.175 21.607 hybrid contribution 1.926 1.707 -0.574 2.637 sum -16.254 -6.629 7.600 19.129 Atomic orbital electron populations 1.20882 0.84171 1.05657 1.05160 1.23477 1.01074 0.88932 0.94035 1.22775 0.92846 1.01528 0.91323 1.21162 0.95717 0.94504 1.03140 1.17999 0.82233 0.87943 0.76212 1.90786 1.72277 1.29642 1.50634 1.45453 1.04920 1.09892 1.72966 1.21298 0.90385 0.86910 0.96311 0.88792 1.23197 1.00354 1.01196 0.93824 0.90628 1.20951 0.96082 0.99947 0.94409 1.21641 0.95578 1.00201 0.97613 1.20971 0.96673 0.93704 0.85653 1.44204 1.05860 1.79791 1.00925 1.19139 0.90205 1.24864 1.00802 0.91431 1.25528 1.01311 0.97932 0.99769 1.70095 1.33632 1.33075 1.20252 0.85505 0.82782 0.76630 0.77344 1.19224 1.22681 1.22712 1.22096 0.88111 0.94622 0.92419 0.91942 1.21804 0.92435 0.97289 0.94397 1.21675 1.01945 0.97876 0.97291 1.21507 1.00540 0.94623 1.00300 1.24808 1.03500 0.88159 0.93416 1.73014 0.99665 1.27646 1.09769 1.72781 1.02069 1.26368 1.08710 0.88219 0.89266 0.87737 0.80519 0.74935 0.92170 0.93724 0.92471 0.94823 0.97390 0.91840 0.94778 0.92756 0.91317 0.91260 0.94143 0.91646 0.92159 0.78716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.19 71.24 0.73 -0.13 16 2 C 0.07 1.16 6.86 42.62 0.29 1.46 16 3 C -0.05 -0.94 9.43 22.79 0.21 -0.73 16 4 C -0.13 -2.60 5.92 -19.83 -0.12 -2.72 16 5 C 0.57 13.68 7.80 86.87 0.68 14.36 16 6 O -0.56 -16.96 16.17 -3.76 -0.06 -17.02 16 7 N -0.68 -15.44 4.21 -457.37 -1.93 -17.37 16 8 C 0.16 4.46 3.89 42.46 0.17 4.63 16 9 H 0.09 2.83 7.61 -2.38 -0.02 2.82 16 10 C -0.16 -5.76 2.97 -14.17 -0.04 -5.80 16 11 H 0.08 3.20 5.88 -2.39 -0.01 3.19 16 12 C -0.08 -2.64 5.94 30.38 0.18 -2.45 16 13 C -0.11 -4.47 5.90 30.80 0.18 -4.29 16 14 C 0.15 6.97 5.82 85.66 0.50 7.47 16 15 N -0.59 -26.42 2.92 -687.46 -2.01 -28.43 16 16 C -0.22 -10.96 7.75 84.03 0.65 -10.31 16 17 H 0.07 3.32 7.22 -2.91 -0.02 3.30 16 18 C -0.05 -2.64 5.10 84.86 0.43 -2.21 16 19 N -0.92 -51.82 11.18 21.65 0.24 -51.58 16 20 Si 0.95 43.45 29.59 68.60 2.03 45.48 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 24 C 0.13 4.76 2.92 42.86 0.13 4.88 16 25 H 0.06 2.01 6.60 -2.39 -0.02 1.99 16 26 C -0.06 -1.74 1.38 -55.18 -0.08 -1.82 16 27 C -0.13 -3.09 9.22 71.98 0.66 -2.43 16 28 C -0.11 -3.81 8.40 71.98 0.60 -3.21 16 29 C 0.07 1.26 10.84 85.05 0.92 2.18 16 30 N -0.26 -6.04 11.49 -56.52 -0.65 -6.69 16 31 N -0.26 -5.70 11.40 -47.69 -0.54 -6.24 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.45 8.09 -2.39 -0.02 0.43 16 35 H 0.18 2.50 7.80 -2.91 -0.02 2.47 16 36 H 0.41 7.53 4.38 -92.70 -0.41 7.12 16 37 H 0.06 1.88 7.97 -2.39 -0.02 1.86 16 38 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.06 3.34 5.71 -2.39 -0.01 3.33 16 43 H 0.24 13.52 8.31 -92.71 -0.77 12.75 16 44 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 1.30 6.32 -2.39 -0.02 1.28 16 47 H 0.04 1.56 5.92 -2.39 -0.01 1.55 16 48 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.06 2.34 6.04 -2.39 -0.01 2.33 16 50 H 0.20 2.55 6.54 -2.91 -0.02 2.54 16 Total: -1.00 -66.00 386.28 3.74 -62.25 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.56 Total: 20.72 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.10 Total: -1.11 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.89 Total: -110.31 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.06 Total: -17.02 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.00 3.74 -62.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.904 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds