Wall clock time and date at job start Wed Apr 1 2020 03:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31926 * 120.17249 * 2 1 4 4 N 1.28281 * 122.32235 * 180.02562 * 3 2 1 5 5 C 1.31915 * 122.52112 * 359.97438 * 4 3 2 6 6 C 1.38511 * 119.96733 * 359.73774 * 5 4 3 7 7 C 1.39725 * 120.17196 * 180.02562 * 2 1 3 8 8 C 1.48136 * 121.14439 * 359.95403 * 7 2 1 9 9 O 1.21515 * 120.00132 * 354.50982 * 8 7 2 10 10 N 1.34782 * 119.99944 * 174.23351 * 8 7 2 11 11 C 1.46506 * 119.99690 * 180.27328 * 10 8 7 12 12 H 1.08997 * 112.86517 * 26.77112 * 11 10 8 13 13 C 1.54147 * 113.63797 * 255.49445 * 11 10 8 14 14 H 1.08997 * 114.24928 * 26.69046 * 13 11 10 15 15 C 1.53064 * 111.68821 * 157.46977 * 13 11 10 16 16 C 1.51278 * 110.34158 * 145.16273 * 15 13 11 17 17 C 1.52934 * 109.35770 * 296.35452 * 16 15 13 18 18 N 1.45885 * 109.89221 * 56.84870 * 17 16 15 19 19 C 1.36939 * 118.48764 * 140.63090 * 18 17 16 20 20 H 1.08001 * 120.00370 * 211.54621 * 19 18 17 21 21 C 1.38818 * 119.99679 * 31.54474 * 19 18 17 22 22 N 1.31616 * 119.99824 * 8.34197 * 21 19 18 23 23 Si 1.86803 * 119.99813 * 188.33390 * 21 19 18 24 24 H 1.48497 * 109.46846 * 60.00554 * 23 21 19 25 25 H 1.48496 * 109.46709 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47175 * 300.00459 * 23 21 19 27 27 C 1.45095 * 123.03357 * 320.66103 * 18 17 16 28 28 H 1.08998 * 112.25900 * 157.09034 * 27 18 17 29 29 C 1.53394 * 113.73779 * 286.73319 * 27 18 17 30 30 C 1.52994 * 113.68784 * 28.72508 * 29 27 18 31 31 C 1.53006 * 113.68130 * 257.59546 * 29 27 18 32 32 H 1.08999 * 109.47504 * 262.74006 * 1 2 3 33 33 H 1.09002 * 109.46877 * 22.74013 * 1 2 3 34 34 H 1.08997 * 109.47508 * 142.74117 * 1 2 3 35 35 H 1.07997 * 120.01838 * 180.02562 * 5 4 3 36 36 H 1.08001 * 121.09102 * 180.26218 * 6 5 4 37 37 H 0.96997 * 120.00112 * 0.27987 * 10 8 7 38 38 H 1.09003 * 109.47757 * 266.38305 * 15 13 11 39 39 H 1.09004 * 109.47971 * 26.41519 * 15 13 11 40 40 H 1.09000 * 109.74963 * 176.14197 * 16 15 13 41 41 H 1.08999 * 109.02641 * 56.13294 * 16 15 13 42 42 H 1.09002 * 109.40791 * 296.71722 * 17 16 15 43 43 H 1.09003 * 109.39730 * 176.97771 * 17 16 15 44 44 H 0.97003 * 119.99668 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.46901 * 145.36905 * 30 29 27 46 46 H 1.08999 * 109.47643 * 265.36868 * 30 29 27 47 47 H 1.09002 * 109.47182 * 25.37530 * 30 29 27 48 48 H 1.09001 * 109.46746 * 303.46235 * 31 29 27 49 49 H 1.08995 * 109.47138 * 63.47109 * 31 29 27 50 50 H 1.08998 * 109.46697 * 183.46636 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4519 1.1886 -0.0005 5 6 4.2023 0.1037 -0.0005 6 6 3.6091 -1.1479 0.0055 7 6 2.2092 -1.2080 -0.0005 8 6 1.4982 -2.5075 -0.0001 9 8 0.2877 -2.5378 0.1014 10 7 2.1935 -3.6561 -0.1179 11 6 1.4897 -4.9411 -0.1235 12 1 0.4652 -4.8612 -0.4867 13 6 1.6175 -5.7215 1.1997 14 1 1.7846 -5.0941 2.0751 15 6 0.4788 -6.7294 1.3741 16 6 0.9785 -7.9702 2.0807 17 6 2.0278 -8.6620 1.2093 18 7 3.1127 -7.7343 0.9081 19 6 4.3969 -8.2096 0.9062 20 1 5.2125 -7.5630 1.1946 21 6 4.6504 -9.5227 0.5338 22 7 3.6858 -10.2609 0.0270 23 14 6.3607 -10.2417 0.7516 24 1 6.7372 -10.1970 2.1874 25 1 6.3692 -11.6500 0.2808 26 1 7.3353 -9.4494 -0.0405 27 6 2.8939 -6.3311 0.6109 28 1 3.7795 -5.7254 0.8031 29 6 2.2911 -6.0805 -0.7772 30 6 1.4204 -7.2310 -1.2860 31 6 3.3104 -5.6000 -1.8122 32 1 -0.3634 -0.1299 1.0194 33 1 -0.3633 0.9478 -0.3973 34 1 -0.3634 -0.8179 -0.6221 35 1 5.2788 0.1913 -0.0005 36 1 4.2059 -2.0480 0.0098 37 1 3.1598 -3.6320 -0.1989 38 1 -0.3268 -6.2719 1.9484 39 1 0.1037 -7.0272 0.3949 40 1 0.1470 -8.6515 2.2609 41 1 1.4264 -7.6816 3.0316 42 1 1.5654 -8.9925 0.2792 43 1 2.4271 -9.5259 1.7406 44 1 3.8630 -11.1783 -0.2336 45 1 0.5933 -6.8294 -1.8713 46 1 2.0207 -7.8920 -1.9113 47 1 1.0269 -7.7915 -0.4379 48 1 3.7985 -4.6958 -1.4487 49 1 4.0578 -6.3767 -1.9737 50 1 2.8007 -5.3853 -2.7514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087296077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:39 Heat of formation + Delta-G solvation = 86.996354 kcal Electronic energy + Delta-G solvation = -31732.831416 eV Core-core repulsion = 27762.787221 eV Total energy + Delta-G solvation = -3970.044194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.64292 -40.91589 -39.04138 -35.56988 -34.06600 -33.95483 -33.11130 -32.55415 -30.44584 -29.98045 -28.51924 -26.95098 -26.19763 -25.39809 -24.47447 -23.26216 -22.53207 -21.53190 -20.87992 -19.45780 -18.41468 -18.03311 -17.19712 -16.87332 -16.04132 -15.99815 -15.75647 -15.45005 -14.89139 -14.68641 -14.42567 -14.10311 -13.86774 -13.78042 -13.51955 -13.18248 -13.03513 -12.80978 -12.59185 -12.41675 -12.24107 -12.16271 -11.70346 -11.41122 -11.29782 -11.21558 -11.09430 -10.92993 -10.84200 -10.61987 -10.57342 -10.55838 -10.28734 -10.09919 -10.02739 -9.87163 -9.67143 -9.61628 -9.39655 -9.16187 -8.76443 -8.42902 -6.64031 -5.84235 -3.34814 0.01633 0.53880 2.56350 2.84790 3.30943 3.31532 3.37387 3.38103 3.70020 4.02018 4.04846 4.31881 4.41485 4.44517 4.85804 4.92918 4.97554 5.11070 5.22418 5.27249 5.30324 5.41766 5.50999 5.53729 5.62214 5.63770 5.73972 5.79091 5.84498 5.87691 6.02601 6.10642 6.11222 6.17718 6.22869 6.37408 6.38619 6.43932 6.51619 6.56500 6.68939 6.72145 6.76607 6.88834 7.03478 7.13914 7.36673 7.39214 7.69762 7.77523 7.98052 8.34510 8.42180 9.19759 9.82439 10.28443 11.21188 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.003143 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.323243 B = 8905.808452 C = 9913.711457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.124 3.876 3 N -0.247 5.247 4 N -0.225 5.225 5 C 0.028 3.972 6 C -0.081 4.081 7 C -0.131 4.131 8 C 0.560 3.440 9 O -0.519 6.519 10 N -0.693 5.693 11 C 0.122 3.878 12 H 0.098 0.902 13 C -0.127 4.127 14 H 0.069 0.931 15 C -0.106 4.106 16 C -0.145 4.145 17 C 0.178 3.822 18 N -0.569 5.569 19 C -0.266 4.266 20 H 0.061 0.939 21 C 0.013 3.987 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.188 3.812 28 H 0.069 0.931 29 C -0.110 4.110 30 C -0.135 4.135 31 C -0.125 4.125 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.179 0.821 36 H 0.155 0.845 37 H 0.400 0.600 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.254 0.746 45 H 0.032 0.968 46 H 0.062 0.938 47 H 0.098 0.902 48 H 0.037 0.963 49 H 0.067 0.933 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 13.684 -1.085 14.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.020 4.020 3 N -0.091 5.091 4 N -0.067 5.067 5 C -0.136 4.136 6 C -0.111 4.111 7 C -0.145 4.145 8 C 0.345 3.655 9 O -0.396 6.396 10 N -0.344 5.344 11 C 0.017 3.983 12 H 0.116 0.884 13 C -0.148 4.148 14 H 0.087 0.913 15 C -0.143 4.143 16 C -0.184 4.184 17 C 0.053 3.947 18 N -0.287 5.287 19 C -0.396 4.396 20 H 0.079 0.921 21 C -0.186 4.186 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.077 3.923 28 H 0.087 0.913 29 C -0.115 4.115 30 C -0.192 4.192 31 C -0.183 4.183 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.197 0.803 36 H 0.173 0.827 37 H 0.237 0.763 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.116 0.884 48 H 0.056 0.944 49 H 0.086 0.914 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.120 15.080 -1.060 15.668 hybrid contribution 1.824 -1.949 0.033 2.670 sum -2.296 13.131 -1.027 13.369 Atomic orbital electron populations 1.20979 0.86194 1.04374 1.04787 1.23171 0.99757 0.88515 0.90575 1.73096 1.01484 1.24071 1.10415 1.72867 0.99702 1.27863 1.06225 1.24307 1.02850 0.89173 0.97223 1.22739 0.94157 1.00601 0.93585 1.21178 0.94517 0.95913 1.02918 1.17841 0.87072 0.83082 0.77491 1.90749 1.13070 1.86792 1.49015 1.45723 1.10735 1.05449 1.72473 1.22455 0.96649 0.80737 0.98458 0.88406 1.23196 0.98556 0.96886 0.96146 0.91289 1.21199 0.95976 0.95428 1.01744 1.21769 0.99857 0.96719 1.00078 1.20687 0.86640 0.91420 0.95953 1.43166 1.03804 1.03074 1.78631 1.19126 0.84659 0.96183 1.39658 0.92129 1.25123 0.97086 0.98280 0.98110 1.69983 1.31286 1.08592 1.44553 0.86411 0.84413 0.78162 0.77930 1.21048 1.21634 1.20954 1.21290 0.93263 0.87267 0.90500 0.91334 1.23016 0.96277 0.93659 0.98525 1.22048 0.97703 0.96981 1.02421 1.21579 0.98971 0.99951 0.97782 0.89303 0.90625 0.87676 0.80347 0.82693 0.76322 0.93338 0.90501 0.92762 0.93078 0.93956 0.91424 0.93548 0.94892 0.91902 0.88429 0.94402 0.91440 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 8.94 36.00 0.32 -0.80 16 2 C 0.12 1.49 6.91 -82.00 -0.57 0.92 16 3 N -0.25 -3.20 11.42 33.81 0.39 -2.82 16 4 N -0.22 -2.69 11.48 30.53 0.35 -2.34 16 5 C 0.03 0.25 11.30 -17.42 -0.20 0.05 16 6 C -0.08 -0.70 9.68 -38.78 -0.38 -1.07 16 7 C -0.13 -1.46 5.92 -104.57 -0.62 -2.08 16 8 C 0.56 7.17 7.74 -12.19 -0.09 7.08 16 9 O -0.52 -7.87 13.18 5.35 0.07 -7.80 16 10 N -0.69 -8.49 4.73 -53.64 -0.25 -8.75 16 11 C 0.12 1.78 3.30 -66.88 -0.22 1.56 16 12 H 0.10 1.53 7.42 -51.93 -0.39 1.14 16 13 C -0.13 -2.04 4.15 -89.88 -0.37 -2.42 16 14 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.11 -1.71 5.12 -27.57 -0.14 -1.85 16 16 C -0.15 -2.59 5.96 -27.63 -0.16 -2.75 16 17 C 0.18 3.86 3.96 -4.41 -0.02 3.84 16 18 N -0.57 -12.59 2.63 -166.86 -0.44 -13.02 16 19 C -0.27 -6.64 9.42 -15.06 -0.14 -6.78 16 20 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 21 C 0.01 0.34 5.03 -17.43 -0.09 0.26 16 22 N -0.90 -24.00 10.93 55.49 0.61 -23.39 16 23 Si 0.90 20.47 29.56 -169.99 -5.03 15.45 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.19 3.41 3.43 -68.38 -0.23 3.17 16 28 H 0.07 1.23 7.97 -51.93 -0.41 0.82 16 29 C -0.11 -1.79 1.33 -153.85 -0.20 -2.00 16 30 C -0.13 -2.37 7.28 37.15 0.27 -2.10 16 31 C -0.13 -1.86 8.91 37.16 0.33 -1.53 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.21 5.99 -51.93 -0.31 0.90 16 35 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.16 0.90 6.65 -52.49 -0.35 0.55 16 37 H 0.40 4.12 5.00 -40.82 -0.20 3.92 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.24 4.70 -51.93 -0.24 0.99 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.98 5.46 -51.93 -0.28 0.70 16 43 H 0.07 1.68 6.70 -51.93 -0.35 1.33 16 44 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 47 H 0.10 1.82 1.85 -51.93 -0.10 1.72 16 48 H 0.04 0.46 5.96 -51.93 -0.31 0.15 16 49 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -28.90 376.86 -8.27 -37.18 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.14 Total: 6.32 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.51 Total: -6.50 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.65 Total: -50.32 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.07 Total: -7.80 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.90 -8.27 -37.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087296077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.173 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds