Wall clock time and date at job start Wed Apr 1 2020 03:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31927 * 120.17066 * 2 1 4 4 N 1.28276 * 122.32469 * 179.97438 * 3 2 1 5 5 C 1.31914 * 122.51700 * 359.97438 * 4 3 2 6 6 C 1.38505 * 119.97114 * 359.71919 * 5 4 3 7 7 C 1.39722 * 120.17348 * 179.97438 * 2 1 3 8 8 C 1.48128 * 121.14403 * 0.02562 * 7 2 1 9 9 O 1.21511 * 120.00645 * 358.57305 * 8 7 2 10 10 N 1.34786 * 119.99925 * 178.85160 * 8 7 2 11 11 C 1.46495 * 120.00136 * 179.72459 * 10 8 7 12 12 H 1.09004 * 113.22561 * 28.30123 * 11 10 8 13 13 C 1.50002 * 114.12799 * 255.49723 * 11 10 8 14 14 H 1.09003 * 112.51192 * 170.15729 * 13 11 10 15 15 C 1.51210 * 126.16126 * 26.65560 * 13 11 10 16 16 C 1.54452 * 106.01510 * 197.78036 * 15 13 11 17 17 C 1.52496 * 111.87313 * 57.02545 * 16 15 13 18 18 N 1.48412 * 111.86182 * 312.57970 * 17 16 15 19 19 C 1.36944 * 123.16546 * 231.85738 * 18 17 16 20 20 H 1.08001 * 119.99563 * 150.32037 * 19 18 17 21 21 C 1.38805 * 120.00294 * 330.31866 * 19 18 17 22 22 N 1.31617 * 120.00122 * 163.32861 * 21 19 18 23 23 Si 1.86801 * 120.00060 * 343.33352 * 21 19 18 24 24 H 1.48501 * 109.47050 * 84.37283 * 23 21 19 25 25 H 1.48499 * 109.47163 * 204.36917 * 23 21 19 26 26 H 1.48493 * 109.47066 * 324.37557 * 23 21 19 27 27 C 1.45376 * 113.66693 * 51.84029 * 18 17 16 28 28 H 1.08994 * 112.08851 * 59.74378 * 27 18 17 29 29 C 1.49961 * 126.22669 * 204.17328 * 27 18 17 30 30 C 1.53001 * 114.08403 * 25.65901 * 29 27 18 31 31 C 1.52999 * 114.08381 * 253.24117 * 29 27 18 32 32 H 1.09004 * 109.46948 * 262.79852 * 1 2 3 33 33 H 1.08999 * 109.47155 * 22.79640 * 1 2 3 34 34 H 1.09002 * 109.47016 * 142.79873 * 1 2 3 35 35 H 1.08004 * 120.01284 * 179.97438 * 5 4 3 36 36 H 1.07989 * 121.09135 * 180.28753 * 6 5 4 37 37 H 0.96998 * 120.00048 * 359.72724 * 10 8 7 38 38 H 1.09000 * 110.09958 * 317.76238 * 15 13 11 39 39 H 1.09001 * 110.10141 * 79.42231 * 15 13 11 40 40 H 1.09003 * 109.76207 * 296.09609 * 16 15 13 41 41 H 1.08997 * 108.66186 * 177.21153 * 16 15 13 42 42 H 1.08994 * 109.00619 * 191.96723 * 17 16 15 43 43 H 1.09006 * 108.94295 * 73.14630 * 17 16 15 44 44 H 0.97004 * 120.00286 * 180.02562 * 22 21 19 45 45 H 1.09008 * 109.46810 * 146.36860 * 30 29 27 46 46 H 1.08996 * 109.47075 * 266.36551 * 30 29 27 47 47 H 1.08995 * 109.47361 * 26.37286 * 30 29 27 48 48 H 1.09004 * 109.46705 * 306.07301 * 31 29 27 49 49 H 1.08997 * 109.47504 * 66.07237 * 31 29 27 50 50 H 1.09000 * 109.47130 * 186.08189 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4519 1.1888 0.0005 5 6 4.2023 0.1039 0.0015 6 6 3.6091 -1.1477 0.0080 7 6 2.2093 -1.2079 0.0005 8 6 1.4983 -2.5074 0.0006 9 8 0.2838 -2.5356 0.0263 10 7 2.1987 -3.6588 -0.0223 11 6 1.4958 -4.9441 -0.0162 12 1 0.5058 -4.8947 -0.4698 13 6 1.5305 -5.6556 1.3038 14 1 0.8629 -6.5169 1.3313 15 6 1.6739 -5.0084 2.6629 16 6 2.1078 -6.1341 3.6273 17 6 3.3926 -6.8137 3.1660 18 7 3.3463 -7.1626 1.7242 19 6 3.6231 -8.4162 1.2475 20 1 3.1479 -8.7672 0.3434 21 6 4.5144 -9.2357 1.9262 22 7 4.5404 -10.5279 1.6778 23 14 5.6770 -8.5045 3.1925 24 1 4.9808 -8.3969 4.4997 25 1 6.8671 -9.3811 3.3362 26 1 6.1072 -7.1545 2.7481 27 6 2.9791 -6.0484 0.8656 28 1 3.6780 -5.2165 0.9523 29 6 2.3620 -6.1459 -0.4976 30 6 1.5686 -7.4327 -0.7332 31 6 3.3193 -5.8068 -1.6420 32 1 -0.3633 -0.1288 1.0196 33 1 -0.3633 0.9474 -0.3982 34 1 -0.3633 -0.8186 -0.6214 35 1 5.2788 0.1916 0.0015 36 1 4.2060 -2.0477 0.0136 37 1 3.1682 -3.6364 -0.0428 38 1 2.4247 -4.2191 2.6245 39 1 0.7163 -4.6007 2.9866 40 1 1.3191 -6.8833 3.6979 41 1 2.2726 -5.7031 4.6148 42 1 3.5410 -7.7240 3.7468 43 1 4.2317 -6.1403 3.3413 44 1 5.1631 -11.1007 2.1523 45 1 0.7224 -7.2231 -1.3877 46 1 2.2136 -8.1769 -1.2005 47 1 1.2045 -7.8148 0.2204 48 1 3.7610 -4.8257 -1.4675 49 1 4.1084 -6.5572 -1.6900 50 1 2.7705 -5.7958 -2.5836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087296078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:42 Heat of formation + Delta-G solvation = 104.067821 kcal Electronic energy + Delta-G solvation = -31962.641346 eV Core-core repulsion = 27993.337426 eV Total energy + Delta-G solvation = -3969.303920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.81308 -41.21508 -39.06171 -35.77183 -34.27415 -33.99275 -33.26155 -32.74422 -30.88898 -29.64950 -28.57537 -27.24989 -26.42254 -25.76265 -24.78785 -23.33422 -22.49769 -21.57129 -20.94894 -19.63896 -18.63422 -18.27416 -17.54730 -16.85490 -16.07642 -15.92584 -15.82273 -15.29360 -15.23623 -14.80135 -14.41461 -14.17478 -14.03550 -13.84022 -13.65538 -13.45832 -13.20456 -13.03013 -12.91838 -12.59626 -12.48223 -12.40153 -11.78572 -11.71129 -11.49652 -11.38481 -11.33115 -11.26271 -10.81154 -10.64511 -10.61282 -10.58223 -10.53852 -10.20998 -10.07931 -9.93670 -9.87007 -9.70941 -9.53597 -9.18988 -8.96970 -8.49206 -6.89665 -6.00349 -3.40279 -0.02796 0.50453 2.51353 2.74620 3.24247 3.27779 3.40248 3.42571 3.66752 3.97652 4.00164 4.26567 4.36965 4.43383 4.47707 4.61163 4.86868 4.89926 5.03750 5.07692 5.22574 5.24306 5.37099 5.45525 5.48296 5.54122 5.60027 5.64871 5.67262 5.75199 5.77688 5.85437 5.91786 5.97359 6.07008 6.14086 6.21250 6.28193 6.28855 6.30340 6.39524 6.46893 6.48591 6.62548 6.65256 6.74943 6.80572 7.01216 7.24723 7.84511 7.90548 8.31267 8.32018 8.83979 9.64984 10.11699 11.15331 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.003393 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.719829 B = 8250.305220 C = 8645.190092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.125 3.875 3 N -0.247 5.247 4 N -0.224 5.224 5 C 0.028 3.972 6 C -0.081 4.081 7 C -0.131 4.131 8 C 0.564 3.436 9 O -0.517 6.517 10 N -0.692 5.692 11 C 0.140 3.860 12 H 0.102 0.898 13 C -0.169 4.169 14 H 0.108 0.892 15 C -0.084 4.084 16 C -0.130 4.130 17 C 0.122 3.878 18 N -0.587 5.587 19 C -0.255 4.255 20 H 0.099 0.901 21 C 0.025 3.975 22 N -0.910 5.910 23 Si 0.884 3.116 24 H -0.287 1.287 25 H -0.305 1.305 26 H -0.276 1.276 27 C 0.149 3.851 28 H 0.046 0.954 29 C -0.061 4.061 30 C -0.117 4.117 31 C -0.135 4.135 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.179 0.821 36 H 0.154 0.846 37 H 0.400 0.600 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.019 0.981 44 H 0.262 0.738 45 H 0.044 0.956 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.043 0.957 49 H 0.068 0.932 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 16.406 -4.162 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.019 4.019 3 N -0.090 5.090 4 N -0.066 5.066 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.146 4.146 8 C 0.349 3.651 9 O -0.393 6.393 10 N -0.344 5.344 11 C 0.035 3.965 12 H 0.120 0.880 13 C -0.190 4.190 14 H 0.126 0.874 15 C -0.122 4.122 16 C -0.169 4.169 17 C -0.003 4.003 18 N -0.310 5.310 19 C -0.383 4.383 20 H 0.116 0.884 21 C -0.174 4.174 22 N -0.553 5.553 23 Si 0.715 3.285 24 H -0.214 1.214 25 H -0.233 1.233 26 H -0.201 1.201 27 C 0.041 3.959 28 H 0.063 0.937 29 C -0.063 4.063 30 C -0.174 4.174 31 C -0.192 4.192 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.196 0.804 36 H 0.172 0.828 37 H 0.237 0.763 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.087 0.913 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.699 17.789 -4.114 18.854 hybrid contribution 1.758 -1.296 0.996 2.401 sum -2.941 16.493 -3.118 17.041 Atomic orbital electron populations 1.21032 0.86164 1.04599 1.04824 1.23180 0.99775 0.88478 0.90482 1.73102 1.01476 1.24079 1.10380 1.72873 0.99705 1.27841 1.06136 1.24306 1.02863 0.89166 0.97213 1.22724 0.94172 1.00573 0.93612 1.21142 0.94468 0.95872 1.03080 1.17790 0.87085 0.82980 0.77253 1.90740 1.12789 1.86777 1.49012 1.45646 1.10176 1.05120 1.73420 1.21628 0.95991 0.80927 0.97969 0.88008 1.23366 1.02627 1.00104 0.92947 0.87405 1.21077 0.99601 0.96818 0.94691 1.21984 0.99870 0.97653 0.97429 1.21441 0.94379 0.98461 0.86005 1.44203 1.81229 1.06405 0.99146 1.19065 1.20033 0.87778 1.11407 0.88384 1.25381 0.97906 0.95537 0.98585 1.69779 1.38605 1.02951 1.44012 0.86998 0.81301 0.78606 0.81553 1.21442 1.23318 1.20121 1.21773 0.92090 0.90610 0.91411 0.93715 1.21876 0.95459 0.94425 0.94499 1.21652 0.98448 0.94640 1.02673 1.21695 0.99304 1.00734 0.97484 0.89376 0.90609 0.87328 0.80361 0.82810 0.76330 0.93082 0.93367 0.91901 0.92945 0.90875 0.96285 0.92760 0.93684 0.91200 0.90474 0.93769 0.91340 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.01 36.00 0.32 -0.78 16 2 C 0.13 1.44 6.91 -82.00 -0.57 0.88 16 3 N -0.25 -3.12 11.42 33.81 0.39 -2.74 16 4 N -0.22 -2.63 11.48 30.53 0.35 -2.28 16 5 C 0.03 0.24 11.30 -17.42 -0.20 0.04 16 6 C -0.08 -0.67 9.70 -38.78 -0.38 -1.05 16 7 C -0.13 -1.40 5.92 -104.58 -0.62 -2.02 16 8 C 0.56 6.74 7.77 -12.20 -0.09 6.64 16 9 O -0.52 -7.34 13.13 5.36 0.07 -7.27 16 10 N -0.69 -7.82 4.27 -58.52 -0.25 -8.07 16 11 C 0.14 1.85 3.90 -71.84 -0.28 1.57 16 12 H 0.10 1.40 7.60 -51.93 -0.39 1.00 16 13 C -0.17 -2.58 3.00 -95.82 -0.29 -2.87 16 14 H 0.11 1.81 6.09 -51.93 -0.32 1.49 16 15 C -0.08 -1.27 5.90 -26.87 -0.16 -1.42 16 16 C -0.13 -2.16 5.94 -26.23 -0.16 -2.32 16 17 C 0.12 2.46 4.21 -3.25 -0.01 2.45 16 18 N -0.59 -12.46 2.59 -169.42 -0.44 -12.90 16 19 C -0.26 -6.43 9.50 -15.06 -0.14 -6.57 16 20 H 0.10 2.57 5.34 -52.49 -0.28 2.29 16 21 C 0.02 0.68 5.35 -17.43 -0.09 0.58 16 22 N -0.91 -26.59 13.97 55.49 0.78 -25.81 16 23 Si 0.88 21.47 24.42 -169.99 -4.15 17.32 16 24 H -0.29 -6.74 6.29 56.52 0.36 -6.39 16 25 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.28 -6.58 6.90 56.52 0.39 -6.19 16 27 C 0.15 2.52 2.88 -72.14 -0.21 2.31 16 28 H 0.05 0.73 6.54 -51.93 -0.34 0.40 16 29 C -0.06 -0.89 1.38 -159.15 -0.22 -1.11 16 30 C -0.12 -1.81 7.28 37.16 0.27 -1.54 16 31 C -0.13 -1.73 9.11 37.16 0.34 -1.39 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 1.19 5.86 -51.93 -0.30 0.88 16 35 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.15 0.85 6.61 -52.49 -0.35 0.51 16 37 H 0.40 3.87 4.37 -40.82 -0.18 3.69 16 38 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.64 4.61 -51.93 -0.24 1.40 16 43 H 0.02 0.39 7.18 -51.93 -0.37 0.01 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.07 1.19 7.05 -51.93 -0.37 0.82 16 47 H 0.08 1.36 5.70 -51.93 -0.30 1.06 16 48 H 0.04 0.47 6.43 -51.93 -0.33 0.14 16 49 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -30.80 373.41 -7.29 -38.09 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.18 Total: 4.61 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.48 Total: -6.58 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.82 Total: -51.79 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.07 Total: -7.27 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.15 Total: 17.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.80 -7.29 -38.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087296078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.156 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds