Wall clock time and date at job start Wed Apr 1 2020 03:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31928 * 120.16771 * 2 1 4 4 N 1.28278 * 122.31959 * 179.69512 * 3 2 1 5 5 C 1.31916 * 122.52000 * 0.59034 * 4 3 2 6 6 C 1.38502 * 119.97000 * 359.71680 * 5 4 3 7 7 C 1.39726 * 120.17569 * 180.27580 * 2 1 3 8 8 C 1.48139 * 121.14337 * 359.97438 * 7 2 1 9 9 O 1.21515 * 119.99627 * 2.71696 * 8 7 2 10 10 N 1.34779 * 119.99792 * 182.71258 * 8 7 2 11 11 C 1.46494 * 119.99658 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.87309 * 26.76439 * 11 10 8 13 13 C 1.54155 * 113.63678 * 255.49371 * 11 10 8 14 14 H 1.09004 * 114.24395 * 104.29663 * 13 11 10 15 15 C 1.53051 * 111.68853 * 334.03049 * 13 11 10 16 16 C 1.53702 * 109.05560 * 213.96813 * 15 13 11 17 17 C 1.52933 * 109.32663 * 64.05256 * 16 15 13 18 18 N 1.45894 * 109.89454 * 302.75162 * 17 16 15 19 19 C 1.36928 * 118.49042 * 219.32426 * 18 17 16 20 20 H 1.07998 * 120.00294 * 149.99292 * 19 18 17 21 21 C 1.38815 * 119.99744 * 329.99266 * 19 18 17 22 22 N 1.31613 * 119.99994 * 348.81945 * 21 19 18 23 23 Si 1.86807 * 119.99954 * 168.82514 * 21 19 18 24 24 H 1.48493 * 109.47479 * 59.99530 * 23 21 19 25 25 H 1.48497 * 109.46870 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46742 * 299.99411 * 23 21 19 27 27 C 1.45093 * 123.02544 * 39.34305 * 18 17 16 28 28 H 1.09000 * 112.25568 * 202.91256 * 27 18 17 29 29 C 1.53386 * 114.62892 * 73.76112 * 27 18 17 30 30 C 1.52998 * 113.68540 * 102.24364 * 29 27 18 31 31 C 1.53003 * 113.68803 * 331.11018 * 29 27 18 32 32 H 1.09006 * 109.47083 * 262.64399 * 1 2 3 33 33 H 1.08999 * 109.46708 * 142.64765 * 1 2 3 34 34 H 1.08993 * 109.47335 * 22.64428 * 1 2 3 35 35 H 1.08004 * 120.01667 * 179.68435 * 5 4 3 36 36 H 1.08001 * 121.09290 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00244 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.48305 * 333.58306 * 15 13 11 39 39 H 1.08999 * 109.47953 * 93.61676 * 15 13 11 40 40 H 1.08998 * 109.28133 * 304.14147 * 16 15 13 41 41 H 1.09003 * 109.44007 * 184.05919 * 16 15 13 42 42 H 1.09009 * 109.39965 * 182.62818 * 17 16 15 43 43 H 1.08996 * 109.40763 * 62.88517 * 17 16 15 44 44 H 0.97005 * 119.99876 * 180.02562 * 22 21 19 45 45 H 1.09006 * 109.47276 * 176.53783 * 30 29 27 46 46 H 1.09004 * 109.47200 * 296.53390 * 30 29 27 47 47 H 1.08994 * 109.47277 * 56.53651 * 30 29 27 48 48 H 1.09001 * 109.46990 * 333.82352 * 31 29 27 49 49 H 1.08996 * 109.47043 * 93.82027 * 31 29 27 50 50 H 1.08996 * 109.47108 * 213.82248 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1406 0.0000 4 7 3.4518 1.1888 0.0058 5 6 4.2023 0.1039 0.0007 6 6 3.6092 -1.1477 -0.0054 7 6 2.2093 -1.2079 -0.0058 8 6 1.4984 -2.5075 -0.0115 9 8 0.2846 -2.5358 -0.0610 10 7 2.1979 -3.6585 0.0382 11 6 1.4948 -4.9437 0.0320 12 1 0.5245 -4.8934 -0.4619 13 6 1.4514 -5.6311 1.4111 14 1 0.4861 -5.5663 1.9133 15 6 2.6244 -5.2004 2.2949 16 6 3.0501 -6.3854 3.1764 17 6 3.5715 -7.5156 2.2878 18 7 2.5457 -7.9043 1.3259 19 6 2.3913 -9.2339 1.0372 20 1 1.4213 -9.6163 0.7558 21 6 3.4816 -10.0903 1.1062 22 7 4.6966 -9.6000 1.2309 23 14 3.2243 -11.9386 1.0220 24 1 2.5734 -12.2897 -0.2656 25 1 4.5372 -12.6259 1.1172 26 1 2.3579 -12.3695 2.1484 27 6 1.6819 -6.9469 0.6608 28 1 0.7555 -7.4013 0.3093 29 6 2.3671 -6.1219 -0.4359 30 6 2.0470 -6.5984 -1.8541 31 6 3.8640 -5.9098 -0.2008 32 1 -0.3633 -0.1316 1.0193 33 1 -0.3633 -0.8169 -0.6235 34 1 -0.3633 0.9484 -0.3956 35 1 5.2788 0.1916 0.0007 36 1 4.2061 -2.0477 -0.0101 37 1 3.1668 -3.6359 0.0780 38 1 3.4619 -4.8988 1.6659 39 1 2.3191 -4.3618 2.9208 40 1 2.1903 -6.7367 3.7469 41 1 3.8371 -6.0653 3.8593 42 1 3.8300 -8.3740 2.9080 43 1 4.4588 -7.1762 1.7535 44 1 5.4586 -10.1984 1.2788 45 1 2.5166 -5.9307 -2.5764 46 1 2.4291 -7.6099 -1.9924 47 1 0.9674 -6.5942 -2.0038 48 1 4.0754 -5.9648 0.8671 49 1 4.4269 -6.6834 -0.7230 50 1 4.1559 -4.9301 -0.5790 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087296079.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:46 Heat of formation + Delta-G solvation = 85.930691 kcal Electronic energy + Delta-G solvation = -31888.611250 eV Core-core repulsion = 27918.520845 eV Total energy + Delta-G solvation = -3970.090405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.64254 -40.91819 -38.98251 -35.40693 -34.11737 -33.93389 -32.91667 -32.76568 -30.36019 -30.06693 -28.51162 -27.03153 -26.19671 -25.54863 -24.42301 -23.27308 -22.52616 -21.69197 -20.38470 -19.58618 -18.45929 -17.98148 -17.21354 -16.91939 -16.03879 -15.93891 -15.76782 -15.35299 -14.99343 -14.83257 -14.48193 -14.18337 -13.82246 -13.61227 -13.41176 -13.30301 -13.00141 -12.80728 -12.60275 -12.41340 -12.39903 -12.01332 -11.70105 -11.54674 -11.29441 -11.22480 -11.10999 -10.91539 -10.80916 -10.58596 -10.56693 -10.47838 -10.31778 -10.10576 -10.02679 -9.94220 -9.72362 -9.57530 -9.49487 -9.23180 -8.75209 -8.44877 -6.67912 -5.84973 -3.33197 0.02639 0.54661 2.58585 2.92142 3.32772 3.33499 3.38575 3.40191 3.71117 4.03167 4.05770 4.33241 4.42256 4.47192 4.85856 4.93480 4.94729 5.11469 5.17449 5.26267 5.28394 5.40269 5.51399 5.52309 5.57646 5.64241 5.74261 5.79733 5.82704 5.87064 5.99340 6.04506 6.09110 6.16515 6.18425 6.29423 6.35465 6.45806 6.48419 6.50791 6.62779 6.67742 6.73341 6.87421 6.93732 7.09365 7.34162 7.40778 7.65852 7.76193 8.00795 8.35434 8.41136 9.19013 9.82071 10.27083 11.20837 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002897 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.547492 B = 9663.633826 C = 9923.377036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.124 3.876 3 N -0.248 5.248 4 N -0.225 5.225 5 C 0.028 3.972 6 C -0.082 4.082 7 C -0.131 4.131 8 C 0.558 3.442 9 O -0.523 6.523 10 N -0.696 5.696 11 C 0.124 3.876 12 H 0.110 0.890 13 C -0.130 4.130 14 H 0.073 0.927 15 C -0.101 4.101 16 C -0.146 4.146 17 C 0.180 3.820 18 N -0.566 5.566 19 C -0.264 4.264 20 H 0.064 0.936 21 C 0.011 3.989 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.190 3.810 28 H 0.076 0.924 29 C -0.112 4.112 30 C -0.126 4.126 31 C -0.138 4.138 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.179 0.821 36 H 0.154 0.846 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.254 0.746 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.047 0.953 48 H 0.095 0.905 49 H 0.065 0.935 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 14.493 -2.000 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.020 4.020 3 N -0.091 5.091 4 N -0.067 5.067 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.145 4.145 8 C 0.343 3.657 9 O -0.400 6.400 10 N -0.347 5.347 11 C 0.019 3.981 12 H 0.128 0.872 13 C -0.151 4.151 14 H 0.091 0.909 15 C -0.139 4.139 16 C -0.184 4.184 17 C 0.055 3.945 18 N -0.284 5.284 19 C -0.393 4.393 20 H 0.081 0.919 21 C -0.188 4.188 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.079 3.921 28 H 0.094 0.906 29 C -0.117 4.117 30 C -0.183 4.183 31 C -0.194 4.194 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.196 0.804 36 H 0.172 0.828 37 H 0.237 0.763 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.113 0.887 49 H 0.084 0.916 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.956 15.993 -1.993 16.235 hybrid contribution 0.741 -2.543 -0.112 2.651 sum -1.215 13.450 -2.105 13.668 Atomic orbital electron populations 1.21073 0.86224 1.04770 1.04830 1.23183 0.99763 0.88509 0.90521 1.73093 1.01476 1.24132 1.10419 1.72865 0.99716 1.27849 1.06253 1.24297 1.02829 0.89187 0.97278 1.22715 0.94195 1.00522 0.93736 1.21214 0.94497 0.96078 1.02759 1.17901 0.87161 0.83240 0.77370 1.90712 1.12908 1.86796 1.49604 1.46050 1.10545 1.05562 1.72581 1.22971 0.96990 0.79704 0.98386 0.87173 1.23261 0.98843 0.98167 0.94867 0.90893 1.21573 0.97281 0.97392 0.97630 1.22214 1.00297 0.97401 0.98522 1.20628 0.90027 0.94196 0.89648 1.43135 1.38649 1.02231 1.44378 1.19168 0.93335 0.83735 1.43106 0.91859 1.25075 0.95099 0.98235 1.00366 1.69995 0.97279 1.33561 1.53783 0.86394 0.76756 0.85565 0.78137 1.20906 1.21684 1.21045 1.21038 0.93793 0.87455 0.89812 0.90589 1.23044 0.95928 0.95207 0.97494 1.21620 1.00164 1.01469 0.95090 1.22016 0.93976 0.98641 1.04799 0.89503 0.87015 0.90643 0.80381 0.82849 0.76269 0.91235 0.93775 0.92772 0.93032 0.91372 0.94325 0.93612 0.94214 0.91618 0.93426 0.88657 0.91554 0.95663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.08 36.01 0.33 -0.86 16 2 C 0.12 1.50 6.91 -81.99 -0.57 0.94 16 3 N -0.25 -3.23 11.42 33.81 0.39 -2.84 16 4 N -0.23 -2.71 11.48 30.53 0.35 -2.36 16 5 C 0.03 0.25 11.30 -17.42 -0.20 0.05 16 6 C -0.08 -0.71 9.69 -38.78 -0.38 -1.09 16 7 C -0.13 -1.47 5.92 -104.57 -0.62 -2.09 16 8 C 0.56 7.14 7.77 -12.19 -0.09 7.04 16 9 O -0.52 -7.87 13.06 5.35 0.07 -7.80 16 10 N -0.70 -8.47 4.27 -53.64 -0.23 -8.70 16 11 C 0.12 1.77 3.58 -66.88 -0.24 1.53 16 12 H 0.11 1.65 7.42 -51.93 -0.39 1.26 16 13 C -0.13 -2.07 4.26 -89.88 -0.38 -2.45 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.10 -1.53 4.72 -26.34 -0.12 -1.65 16 16 C -0.15 -2.51 6.03 -26.40 -0.16 -2.67 16 17 C 0.18 3.82 3.98 -4.40 -0.02 3.80 16 18 N -0.57 -12.48 2.66 -166.86 -0.44 -12.92 16 19 C -0.26 -6.61 9.43 -15.06 -0.14 -6.75 16 20 H 0.06 1.59 7.84 -52.49 -0.41 1.18 16 21 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 22 N -0.90 -23.90 10.99 55.49 0.61 -23.29 16 23 Si 0.90 20.62 29.57 -169.99 -5.03 15.60 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.19 3.52 3.54 -68.38 -0.24 3.27 16 28 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 29 C -0.11 -1.79 1.35 -153.85 -0.21 -2.00 16 30 C -0.13 -1.96 9.10 37.16 0.34 -1.62 16 31 C -0.14 -2.20 6.96 37.16 0.26 -1.94 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.31 5.73 -51.93 -0.30 1.01 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.15 0.91 6.62 -52.49 -0.35 0.56 16 37 H 0.40 4.19 3.82 -40.82 -0.16 4.04 16 38 H 0.07 0.98 3.78 -51.93 -0.20 0.79 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.67 6.67 -51.92 -0.35 1.32 16 43 H 0.04 0.87 5.59 -51.93 -0.29 0.58 16 44 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.68 8.02 -51.93 -0.42 0.27 16 48 H 0.10 1.62 1.97 -51.93 -0.10 1.52 16 49 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 50 H 0.02 0.32 6.35 -51.93 -0.33 -0.01 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -28.59 374.67 -8.22 -36.80 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.05 Total: 6.16 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.53 Total: -6.30 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.67 Total: -50.11 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.07 Total: -7.80 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.59 -8.22 -36.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087296079.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.736 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds