Wall clock time and date at job start Wed Apr 1 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31928 * 120.16771 * 2 1 4 4 N 1.28278 * 122.31959 * 179.69512 * 3 2 1 5 5 C 1.31916 * 122.52000 * 0.59034 * 4 3 2 6 6 C 1.38502 * 119.97000 * 359.71680 * 5 4 3 7 7 C 1.39726 * 120.17569 * 180.27580 * 2 1 3 8 8 C 1.48139 * 121.14337 * 359.97438 * 7 2 1 9 9 O 1.21515 * 119.99627 * 2.71696 * 8 7 2 10 10 N 1.34779 * 119.99792 * 182.71258 * 8 7 2 11 11 C 1.46494 * 119.99658 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.87309 * 26.76439 * 11 10 8 13 13 C 1.54155 * 113.63678 * 255.49371 * 11 10 8 14 14 H 1.09004 * 114.24395 * 104.29663 * 13 11 10 15 15 C 1.53051 * 111.68853 * 334.03049 * 13 11 10 16 16 C 1.53702 * 109.05560 * 213.96813 * 15 13 11 17 17 C 1.52933 * 109.32663 * 64.05256 * 16 15 13 18 18 N 1.45894 * 109.89454 * 302.75162 * 17 16 15 19 19 C 1.36928 * 118.49042 * 219.32426 * 18 17 16 20 20 H 1.07998 * 120.00294 * 149.99292 * 19 18 17 21 21 C 1.38815 * 119.99744 * 329.99266 * 19 18 17 22 22 N 1.31613 * 119.99994 * 348.81945 * 21 19 18 23 23 Si 1.86807 * 119.99954 * 168.82514 * 21 19 18 24 24 H 1.48493 * 109.47479 * 59.99530 * 23 21 19 25 25 H 1.48497 * 109.46870 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46742 * 299.99411 * 23 21 19 27 27 C 1.45093 * 123.02544 * 39.34305 * 18 17 16 28 28 H 1.09000 * 112.25568 * 202.91256 * 27 18 17 29 29 C 1.53386 * 114.62892 * 73.76112 * 27 18 17 30 30 C 1.52998 * 113.68540 * 102.24364 * 29 27 18 31 31 C 1.53003 * 113.68803 * 331.11018 * 29 27 18 32 32 H 1.09006 * 109.47083 * 262.64399 * 1 2 3 33 33 H 1.08999 * 109.46708 * 142.64765 * 1 2 3 34 34 H 1.08993 * 109.47335 * 22.64428 * 1 2 3 35 35 H 1.08004 * 120.01667 * 179.68435 * 5 4 3 36 36 H 1.08001 * 121.09290 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00244 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.48305 * 333.58306 * 15 13 11 39 39 H 1.08999 * 109.47953 * 93.61676 * 15 13 11 40 40 H 1.08998 * 109.28133 * 304.14147 * 16 15 13 41 41 H 1.09003 * 109.44007 * 184.05919 * 16 15 13 42 42 H 1.09009 * 109.39965 * 182.62818 * 17 16 15 43 43 H 1.08996 * 109.40763 * 62.88517 * 17 16 15 44 44 H 0.97005 * 119.99876 * 180.02562 * 22 21 19 45 45 H 1.09006 * 109.47276 * 176.53783 * 30 29 27 46 46 H 1.09004 * 109.47200 * 296.53390 * 30 29 27 47 47 H 1.08994 * 109.47277 * 56.53651 * 30 29 27 48 48 H 1.09001 * 109.46990 * 333.82352 * 31 29 27 49 49 H 1.08996 * 109.47043 * 93.82027 * 31 29 27 50 50 H 1.08996 * 109.47108 * 213.82248 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1406 0.0000 4 7 3.4518 1.1888 0.0058 5 6 4.2023 0.1039 0.0007 6 6 3.6092 -1.1477 -0.0054 7 6 2.2093 -1.2079 -0.0058 8 6 1.4984 -2.5075 -0.0115 9 8 0.2846 -2.5358 -0.0610 10 7 2.1979 -3.6585 0.0382 11 6 1.4948 -4.9437 0.0320 12 1 0.5245 -4.8934 -0.4619 13 6 1.4514 -5.6311 1.4111 14 1 0.4861 -5.5663 1.9133 15 6 2.6244 -5.2004 2.2949 16 6 3.0501 -6.3854 3.1764 17 6 3.5715 -7.5156 2.2878 18 7 2.5457 -7.9043 1.3259 19 6 2.3913 -9.2339 1.0372 20 1 1.4213 -9.6163 0.7558 21 6 3.4816 -10.0903 1.1062 22 7 4.6966 -9.6000 1.2309 23 14 3.2243 -11.9386 1.0220 24 1 2.5734 -12.2897 -0.2656 25 1 4.5372 -12.6259 1.1172 26 1 2.3579 -12.3695 2.1484 27 6 1.6819 -6.9469 0.6608 28 1 0.7555 -7.4013 0.3093 29 6 2.3671 -6.1219 -0.4359 30 6 2.0470 -6.5984 -1.8541 31 6 3.8640 -5.9098 -0.2008 32 1 -0.3633 -0.1316 1.0193 33 1 -0.3633 -0.8169 -0.6235 34 1 -0.3633 0.9484 -0.3956 35 1 5.2788 0.1916 0.0007 36 1 4.2061 -2.0477 -0.0101 37 1 3.1668 -3.6359 0.0780 38 1 3.4619 -4.8988 1.6659 39 1 2.3191 -4.3618 2.9208 40 1 2.1903 -6.7367 3.7469 41 1 3.8371 -6.0653 3.8593 42 1 3.8300 -8.3740 2.9080 43 1 4.4588 -7.1762 1.7535 44 1 5.4586 -10.1984 1.2788 45 1 2.5166 -5.9307 -2.5764 46 1 2.4291 -7.6099 -1.9924 47 1 0.9674 -6.5942 -2.0038 48 1 4.0754 -5.9648 0.8671 49 1 4.4269 -6.6834 -0.7230 50 1 4.1559 -4.9301 -0.5790 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087296079.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:45 Heat of formation + Delta-G solvation = 69.638643 kcal Electronic energy + Delta-G solvation = -31889.317726 eV Core-core repulsion = 27918.520845 eV Total energy + Delta-G solvation = -3970.796881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.62229 -42.04873 -40.05262 -36.91319 -35.14906 -34.77218 -34.44431 -33.77590 -32.07788 -31.43753 -29.34126 -28.33043 -27.25946 -27.08902 -25.76326 -24.18238 -23.91432 -22.96131 -21.57688 -20.89837 -19.57872 -18.94162 -18.69518 -18.31781 -17.10883 -16.76635 -16.71118 -16.60699 -16.28781 -16.23957 -15.82202 -15.26382 -15.16553 -14.81506 -14.76785 -14.33428 -14.24266 -13.99142 -13.82567 -13.77286 -13.52009 -13.20973 -13.06305 -12.89825 -12.80836 -12.78297 -12.51054 -12.43564 -12.11247 -12.07013 -11.96234 -11.57898 -11.46745 -11.35982 -11.29730 -11.18436 -10.96731 -10.84619 -10.74723 -10.48879 -10.32500 -9.89660 -8.47622 -7.78281 -5.27150 -0.77244 -0.18634 1.47575 1.49511 1.54505 1.65979 1.91283 2.51795 2.54440 2.95203 3.27560 3.30576 3.34762 3.53993 3.58651 3.66407 3.74831 3.81742 3.94100 4.05153 4.25856 4.29097 4.42764 4.42960 4.49845 4.51949 4.60677 4.67593 4.70762 4.72620 4.81309 4.87877 4.93111 4.95557 5.06090 5.08774 5.12832 5.13874 5.18065 5.23747 5.30657 5.38655 5.42085 5.55447 5.59900 5.61507 5.73408 5.75846 6.01927 6.40934 6.48086 7.04060 7.28216 7.57201 8.04720 8.40275 9.23281 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002897 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.547492 B = 9663.633826 C = 9923.377036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.113 3.887 3 N -0.276 5.276 4 N -0.253 5.253 5 C 0.037 3.963 6 C -0.063 4.063 7 C -0.145 4.145 8 C 0.564 3.436 9 O -0.547 6.547 10 N -0.688 5.688 11 C 0.148 3.852 12 H 0.108 0.892 13 C -0.126 4.126 14 H 0.071 0.929 15 C -0.094 4.094 16 C -0.137 4.137 17 C 0.190 3.810 18 N -0.578 5.578 19 C -0.268 4.268 20 H 0.056 0.944 21 C -0.034 4.034 22 N -0.923 5.923 23 Si 0.953 3.047 24 H -0.281 1.281 25 H -0.295 1.295 26 H -0.284 1.284 27 C 0.169 3.831 28 H 0.063 0.937 29 C -0.106 4.106 30 C -0.123 4.123 31 C -0.132 4.132 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.220 0.780 36 H 0.189 0.811 37 H 0.410 0.590 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.247 0.753 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.056 0.944 48 H 0.087 0.913 49 H 0.032 0.968 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 16.402 -2.219 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.032 4.032 3 N -0.118 5.118 4 N -0.094 5.094 5 C -0.128 4.128 6 C -0.093 4.093 7 C -0.159 4.159 8 C 0.350 3.650 9 O -0.426 6.426 10 N -0.340 5.340 11 C 0.042 3.958 12 H 0.126 0.874 13 C -0.147 4.147 14 H 0.090 0.910 15 C -0.131 4.131 16 C -0.176 4.176 17 C 0.065 3.935 18 N -0.297 5.297 19 C -0.399 4.399 20 H 0.074 0.926 21 C -0.231 4.231 22 N -0.568 5.568 23 Si 0.782 3.218 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.211 1.211 27 C 0.060 3.940 28 H 0.081 0.919 29 C -0.110 4.110 30 C -0.180 4.180 31 C -0.189 4.189 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.236 0.764 36 H 0.206 0.794 37 H 0.250 0.750 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.105 0.895 49 H 0.051 0.949 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.194 17.947 -2.219 18.123 hybrid contribution 0.494 -3.138 -0.050 3.177 sum -0.699 14.810 -2.269 14.999 Atomic orbital electron populations 1.21007 0.86064 1.04738 1.04649 1.23305 1.00152 0.88841 0.90888 1.73052 1.02265 1.24722 1.11750 1.72779 0.99617 1.29708 1.07275 1.24942 1.04417 0.88282 0.95138 1.23119 0.93154 1.01898 0.91146 1.21081 0.95680 0.94728 1.04397 1.18043 0.86833 0.83627 0.76474 1.90718 1.14183 1.87168 1.50533 1.45823 1.10928 1.04557 1.72650 1.22522 0.96508 0.80100 0.96649 0.87384 1.23213 0.99270 0.96414 0.95799 0.91036 1.21540 0.97266 0.96776 0.97490 1.22077 1.00391 0.96806 0.98300 1.20391 0.89854 0.93921 0.89336 1.43240 1.39194 1.01920 1.45372 1.19379 0.92918 0.85616 1.41944 0.92639 1.25612 0.95100 1.01181 1.01186 1.70120 0.97478 1.33988 1.55207 0.85577 0.76177 0.82081 0.77924 1.20676 1.22134 1.21078 1.21256 0.93065 0.88025 0.91698 0.91865 1.22873 0.96183 0.95264 0.96680 1.21573 1.00874 1.00137 0.95417 1.21925 0.93248 0.99775 1.03929 0.89468 0.88053 0.89874 0.76386 0.79404 0.75007 0.89784 0.91686 0.93784 0.90982 0.95517 0.95503 0.94351 0.92234 0.94584 0.92478 0.89525 0.94925 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 9.08 71.24 0.65 -1.55 16 2 C 0.11 2.54 6.91 42.90 0.30 2.84 16 3 N -0.28 -6.77 11.42 -46.95 -0.54 -7.31 16 4 N -0.25 -5.48 11.48 -57.33 -0.66 -6.14 16 5 C 0.04 0.49 11.30 84.74 0.96 1.45 16 6 C -0.06 -0.81 9.69 22.79 0.22 -0.59 16 7 C -0.14 -2.81 5.92 -19.83 -0.12 -2.93 16 8 C 0.56 12.70 7.77 86.87 0.68 13.38 16 9 O -0.55 -15.39 13.06 -3.76 -0.05 -15.43 16 10 N -0.69 -14.11 4.27 -441.91 -1.89 -15.99 16 11 C 0.15 3.85 3.58 45.67 0.16 4.01 16 12 H 0.11 2.98 7.42 -2.39 -0.02 2.97 16 13 C -0.13 -3.75 4.26 -10.31 -0.04 -3.80 16 14 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 15 C -0.09 -2.54 4.72 30.85 0.15 -2.39 16 16 C -0.14 -4.54 6.03 30.81 0.19 -4.35 16 17 C 0.19 8.15 3.98 86.47 0.34 8.49 16 18 N -0.58 -25.91 2.66 -681.83 -1.81 -27.72 16 19 C -0.27 -13.80 9.43 84.04 0.79 -13.01 16 20 H 0.06 2.88 7.84 -2.91 -0.02 2.86 16 21 C -0.03 -1.80 4.96 84.86 0.42 -1.38 16 22 N -0.92 -50.30 10.99 21.65 0.24 -50.06 16 23 Si 0.95 43.39 29.57 68.60 2.03 45.42 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 C 0.17 6.20 3.54 45.45 0.16 6.36 16 28 H 0.06 2.44 7.94 -2.39 -0.02 2.42 16 29 C -0.11 -3.22 1.35 -51.76 -0.07 -3.29 16 30 C -0.12 -3.68 9.10 71.98 0.65 -3.03 16 31 C -0.13 -3.96 6.96 71.98 0.50 -3.46 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.10 2.31 5.73 -2.39 -0.01 2.29 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.22 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.19 1.03 6.62 -2.91 -0.02 1.01 16 37 H 0.41 6.54 3.82 -92.71 -0.35 6.19 16 38 H 0.08 2.05 3.78 -2.39 -0.01 2.04 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.03 1.34 6.67 -2.38 -0.02 1.33 16 43 H 0.03 1.22 5.59 -2.39 -0.01 1.21 16 44 H 0.25 13.32 8.31 -92.70 -0.77 12.55 16 45 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.06 1.58 8.02 -2.39 -0.02 1.56 16 48 H 0.09 2.78 1.97 -2.39 0.00 2.77 16 49 H 0.03 1.20 8.05 -2.39 -0.02 1.18 16 50 H 0.07 1.40 6.35 -2.39 -0.02 1.38 16 Total: -1.00 -65.17 374.67 3.89 -61.28 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.63 Total: 19.21 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.94 Total: -3.25 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -4.66 Total: -107.23 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.05 Total: -15.43 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.17 3.89 -61.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087296079.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.918 kcal (2) G-P(sol) polarization free energy of solvation -65.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds