Wall clock time and date at job start Wed Apr 1 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99923 * 2 1 4 4 H 1.48502 * 109.46715 * 270.00106 * 3 2 1 5 5 H 1.48503 * 109.46926 * 29.99754 * 3 2 1 6 6 H 1.48499 * 109.47147 * 149.99833 * 3 2 1 7 7 C 1.38809 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00292 * 154.60705 * 7 2 1 9 9 N 1.36945 * 119.99730 * 334.61015 * 7 2 1 10 10 C 1.44350 * 116.42430 * 334.32843 * 9 7 2 11 11 C 1.51572 * 113.01251 * 188.01525 * 10 9 7 12 12 C 1.52901 * 111.66975 * 320.12971 * 11 10 9 13 13 H 1.09006 * 113.03987 * 294.28562 * 12 11 10 14 14 C 1.55412 * 106.56761 * 169.87781 * 12 11 10 15 15 N 1.47380 * 106.73897 * 270.99350 * 14 12 11 16 16 C 1.34777 * 125.74436 * 179.05771 * 15 14 12 17 17 O 1.21277 * 119.99928 * 5.14508 * 16 15 14 18 18 C 1.50701 * 120.00386 * 185.14041 * 16 15 14 19 19 H 1.09002 * 109.67605 * 25.60070 * 18 16 15 20 20 C 1.53400 * 109.68335 * 265.08840 * 18 16 15 21 21 C 1.53115 * 109.44826 * 190.58386 * 20 18 16 22 22 C 1.53354 * 109.53094 * 69.99877 * 21 20 18 23 23 C 1.50859 * 108.42050 * 310.01881 * 22 21 20 24 24 N 1.33574 * 128.04083 * 196.73501 * 23 22 21 25 25 C 1.30753 * 109.14706 * 179.90406 * 24 23 22 26 26 N 1.35305 * 108.77243 * 0.02562 * 25 24 23 27 27 H 0.97000 * 126.50398 * 180.02562 * 26 25 24 28 28 C 1.35106 * 124.00125 * 16.70948 * 23 22 21 29 29 C 1.47937 * 108.51665 * 359.32881 * 15 14 12 30 30 C 1.54105 * 109.62765 * 60.85035 * 12 11 10 31 31 H 1.09004 * 109.18280 * 187.52393 * 30 12 11 32 32 C 1.43983 * 116.42162 * 154.30668 * 9 7 2 33 33 H 0.97002 * 120.00238 * 0.02562 * 1 2 3 34 34 H 1.08999 * 108.77520 * 308.93037 * 10 9 7 35 35 H 1.09005 * 108.77322 * 67.22577 * 10 9 7 36 36 H 1.08991 * 109.03820 * 199.55925 * 11 10 9 37 37 H 1.09006 * 109.03699 * 80.69150 * 11 10 9 38 38 H 1.09002 * 110.00796 * 151.68036 * 14 12 11 39 39 H 1.08994 * 110.00911 * 30.31796 * 14 12 11 40 40 H 1.09000 * 109.46954 * 310.57692 * 20 18 16 41 41 H 1.09001 * 109.47972 * 70.58272 * 20 18 16 42 42 H 1.09002 * 109.46166 * 190.01917 * 21 20 18 43 43 H 1.09003 * 109.46392 * 309.98270 * 21 20 18 44 44 H 1.09000 * 109.67548 * 69.75544 * 22 21 20 45 45 H 1.09009 * 109.67382 * 190.28540 * 22 21 20 46 46 H 1.08002 * 125.61082 * 179.97438 * 25 24 23 47 47 H 1.08993 * 110.57039 * 93.87912 * 29 15 14 48 48 H 1.09006 * 110.56351 * 216.73841 * 29 15 14 49 49 H 1.09004 * 108.11143 * 61.10352 * 32 9 7 50 50 H 1.08996 * 107.95441 * 304.51952 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0120 -1.2474 -0.4005 9 7 1.4248 -2.3306 0.5096 10 6 0.3978 -2.1288 1.5037 11 6 -0.0604 -3.4196 2.1527 12 6 -0.1677 -4.5560 1.1354 13 1 -0.9456 -4.3894 0.3902 14 6 -0.3856 -5.8613 1.9503 15 7 0.9521 -6.3965 2.2603 16 6 1.2083 -7.5127 2.9709 17 8 0.2948 -8.2213 3.3373 18 6 2.6299 -7.8804 3.3101 19 1 3.2475 -6.9823 3.3259 20 6 3.1731 -8.8626 2.2646 21 6 4.5082 -9.4353 2.7482 22 6 4.2633 -10.3738 3.9361 23 6 3.3956 -9.6558 4.9398 24 7 3.1933 -9.9653 6.2234 25 6 2.3743 -9.0932 6.7509 26 7 2.0278 -8.1922 5.8027 27 1 1.4324 -7.4350 5.9163 28 6 2.6728 -8.5494 4.6592 29 6 1.9666 -5.4987 1.6658 30 6 1.2132 -4.8170 0.5032 31 1 1.1044 -5.5319 -0.3125 32 6 1.9010 -3.5877 -0.0061 33 1 -0.4850 0.8400 -0.0004 34 1 0.7839 -1.4649 2.2772 35 1 -0.4605 -1.6525 1.0297 36 1 -1.0358 -3.2600 2.6119 37 1 0.6537 -3.7015 2.9267 38 1 -0.9472 -6.5824 1.3564 39 1 -0.9216 -5.6397 2.8731 40 1 2.4594 -9.6742 2.1232 41 1 3.3224 -8.3412 1.3190 42 1 4.9800 -9.9908 1.9377 43 1 5.1621 -8.6201 3.0583 44 1 3.7575 -11.2762 3.5926 45 1 5.2151 -10.6387 4.3967 46 1 2.0302 -9.0926 7.7746 47 1 2.2991 -4.7603 2.3953 48 1 2.8125 -6.0735 1.2885 49 1 2.9619 -3.6707 0.2298 50 1 1.7980 -3.5665 -1.0910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088102306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:13 Heat of formation + Delta-G solvation = 43.283011 kcal Electronic energy + Delta-G solvation = -31240.134638 eV Core-core repulsion = 27268.194891 eV Total energy + Delta-G solvation = -3971.939747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50864 -40.47421 -38.65056 -36.61386 -35.73278 -33.35612 -32.68768 -31.66224 -30.64598 -30.03805 -29.14551 -27.97787 -25.75612 -24.64537 -23.31955 -22.47125 -22.29003 -21.88951 -21.44279 -19.56500 -19.10733 -18.10796 -17.71186 -17.32541 -17.05153 -15.85848 -15.59501 -15.27244 -14.95716 -14.76354 -14.64705 -14.36050 -14.06116 -13.89968 -13.80234 -13.56297 -13.34024 -13.20936 -12.94826 -12.73646 -12.53633 -12.36338 -12.19655 -11.87903 -11.57384 -11.35749 -11.19587 -11.17970 -11.15276 -10.80238 -10.60906 -10.36730 -10.30049 -10.21422 -9.99458 -9.94758 -9.78025 -9.69038 -9.64863 -8.68364 -8.53482 -8.31006 -6.70325 -5.70358 -3.32390 1.85020 2.42164 2.83785 2.95132 3.01375 3.32955 3.41134 3.44355 4.15125 4.30011 4.42896 4.44025 4.56460 4.63968 4.71532 4.86940 4.94397 5.00118 5.03596 5.10212 5.22408 5.22995 5.30328 5.37933 5.42921 5.46491 5.56291 5.62155 5.66072 5.73004 5.73810 5.80302 5.88663 5.93921 6.02443 6.04037 6.06861 6.09782 6.27626 6.42470 6.48005 6.55629 6.58850 6.69780 6.77034 7.20779 7.21861 7.42645 7.75243 7.84435 7.92097 8.01579 8.45303 9.21746 9.91613 10.20517 11.16870 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.002578 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.052194 B =10860.147088 C =11063.169757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.006 3.994 3 Si 0.897 3.103 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.270 4.270 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.157 3.843 11 C -0.122 4.122 12 C -0.081 4.081 13 H 0.100 0.900 14 C 0.108 3.892 15 N -0.614 5.614 16 C 0.527 3.473 17 O -0.540 6.540 18 C -0.026 4.026 19 H 0.103 0.897 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.034 4.034 23 C 0.010 3.990 24 N -0.487 5.487 25 C 0.180 3.820 26 N -0.550 5.550 27 H 0.420 0.580 28 C -0.002 4.002 29 C 0.103 3.897 30 C -0.097 4.097 31 H 0.075 0.925 32 C 0.176 3.824 33 H 0.253 0.747 34 H 0.019 0.981 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.208 0.792 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.015 0.985 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.781 -16.338 7.142 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.193 4.193 3 Si 0.726 3.274 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.400 4.400 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.032 3.968 11 C -0.160 4.160 12 C -0.100 4.100 13 H 0.118 0.882 14 C -0.014 4.014 15 N -0.347 5.347 16 C 0.315 3.685 17 O -0.417 6.417 18 C -0.049 4.049 19 H 0.120 0.880 20 C -0.141 4.141 21 C -0.154 4.154 22 C -0.072 4.072 23 C -0.121 4.121 24 N -0.206 5.206 25 C -0.103 4.103 26 N -0.150 5.150 27 H 0.257 0.743 28 C -0.120 4.120 29 C -0.019 4.019 30 C -0.116 4.116 31 H 0.094 0.906 32 C 0.049 3.951 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.224 0.776 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.033 0.967 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.527 -17.426 7.848 19.640 hybrid contribution -0.421 2.142 -0.137 2.188 sum 4.107 -15.284 7.711 17.604 Atomic orbital electron populations 1.70009 1.05508 1.25452 1.52277 1.24927 0.94943 0.98521 1.00958 0.86390 0.79479 0.83729 0.77777 1.21371 1.21550 1.20509 1.19103 0.96547 0.86695 1.37618 0.91596 1.42700 1.43954 1.00811 1.43615 1.20242 0.94484 0.91740 0.90323 1.21673 1.00442 0.96651 0.97212 1.22081 0.97559 0.92981 0.97342 0.88197 1.22442 0.83915 0.95438 0.99581 1.48800 1.08975 1.24225 1.52718 1.20174 0.90832 0.79614 0.77916 1.90716 1.46856 1.50181 1.53923 1.19840 0.94320 0.99800 0.90917 0.87958 1.21525 0.97845 0.98205 0.96548 1.21604 0.96507 0.99484 0.97761 1.19951 0.98038 0.97185 0.92073 1.20454 1.03035 0.95979 0.92614 1.69968 1.16764 1.25774 1.08119 1.24977 0.99967 0.88948 0.96425 1.42858 1.37144 1.25403 1.09641 0.74284 1.20218 1.02358 1.00926 0.88480 1.22649 0.91188 0.92314 0.95792 1.21649 0.95316 0.98297 0.96364 0.90637 1.19253 0.95268 0.84387 0.96153 0.93659 0.96323 0.90217 0.92383 0.93546 0.91744 0.91504 0.90535 0.90210 0.90355 0.91161 0.90586 0.90317 0.77563 0.90484 0.90533 0.96720 0.95726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 10.89 55.49 0.60 -24.01 16 2 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 3 Si 0.90 20.91 29.62 -169.99 -5.04 15.88 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.27 -7.05 9.27 -15.06 -0.14 -7.19 16 8 H 0.07 1.70 7.95 -52.49 -0.42 1.28 16 9 N -0.59 -13.58 3.23 -179.69 -0.58 -14.16 16 10 C 0.16 3.49 5.07 -5.91 -0.03 3.46 16 11 C -0.12 -2.06 4.78 -27.50 -0.13 -2.19 16 12 C -0.08 -1.21 3.65 -88.81 -0.32 -1.54 16 13 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.11 1.47 6.25 -2.28 -0.01 1.46 16 15 N -0.61 -7.97 3.34 -169.45 -0.57 -8.54 16 16 C 0.53 7.08 6.80 -10.98 -0.07 7.00 16 17 O -0.54 -9.07 16.74 5.56 0.09 -8.98 16 18 C -0.03 -0.29 2.33 -92.74 -0.22 -0.50 16 19 H 0.10 1.00 7.18 -51.93 -0.37 0.63 16 20 C -0.10 -0.94 5.21 -26.46 -0.14 -1.08 16 21 C -0.12 -0.89 5.90 -26.49 -0.16 -1.05 16 22 C -0.03 -0.33 6.30 -27.62 -0.17 -0.50 16 23 C 0.01 0.12 6.98 -82.87 -0.58 -0.46 16 24 N -0.49 -6.50 11.25 -10.73 -0.12 -6.62 16 25 C 0.18 1.92 13.05 -89.92 -1.17 0.75 16 26 N -0.55 -6.02 6.03 -10.28 -0.06 -6.08 16 27 H 0.42 3.89 8.96 -40.82 -0.37 3.53 16 28 C 0.00 -0.03 5.91 -81.86 -0.48 -0.51 16 29 C 0.10 1.28 4.95 -2.51 -0.01 1.27 16 30 C -0.10 -1.42 2.84 -90.90 -0.26 -1.68 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 C 0.18 3.30 5.75 -6.97 -0.04 3.26 16 33 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.08 2.04 5.82 -51.93 -0.30 1.74 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.76 6.60 -51.93 -0.34 0.41 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.92 7.79 -51.93 -0.40 0.51 16 40 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 46 H 0.21 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.08 1.04 7.16 -51.93 -0.37 0.66 16 48 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 49 H 0.02 0.27 7.81 -51.93 -0.41 -0.13 16 50 H 0.02 0.50 8.13 -51.93 -0.42 0.07 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -32.53 382.68 -11.91 -44.43 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.98 Total: 1.74 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -4.03 Total: 0.57 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.73 Total: -59.40 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.04 Total: 15.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.53 -11.91 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088102306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.716 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds