Wall clock time and date at job start Wed Apr 1 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99923 * 2 1 4 4 H 1.48502 * 109.46715 * 270.00106 * 3 2 1 5 5 H 1.48503 * 109.46926 * 29.99754 * 3 2 1 6 6 H 1.48499 * 109.47147 * 149.99833 * 3 2 1 7 7 C 1.38809 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00292 * 154.60705 * 7 2 1 9 9 N 1.36945 * 119.99730 * 334.61015 * 7 2 1 10 10 C 1.44350 * 116.42430 * 334.32843 * 9 7 2 11 11 C 1.51572 * 113.01251 * 188.01525 * 10 9 7 12 12 C 1.52901 * 111.66975 * 320.12971 * 11 10 9 13 13 H 1.09006 * 113.03987 * 294.28562 * 12 11 10 14 14 C 1.55412 * 106.56761 * 169.87781 * 12 11 10 15 15 N 1.47380 * 106.73897 * 270.99350 * 14 12 11 16 16 C 1.34777 * 125.74436 * 179.05771 * 15 14 12 17 17 O 1.21277 * 119.99928 * 5.14508 * 16 15 14 18 18 C 1.50701 * 120.00386 * 185.14041 * 16 15 14 19 19 H 1.09002 * 109.67605 * 25.60070 * 18 16 15 20 20 C 1.53400 * 109.68335 * 265.08840 * 18 16 15 21 21 C 1.53115 * 109.44826 * 190.58386 * 20 18 16 22 22 C 1.53354 * 109.53094 * 69.99877 * 21 20 18 23 23 C 1.50859 * 108.42050 * 310.01881 * 22 21 20 24 24 N 1.33574 * 128.04083 * 196.73501 * 23 22 21 25 25 C 1.30753 * 109.14706 * 179.90406 * 24 23 22 26 26 N 1.35305 * 108.77243 * 0.02562 * 25 24 23 27 27 H 0.97000 * 126.50398 * 180.02562 * 26 25 24 28 28 C 1.35106 * 124.00125 * 16.70948 * 23 22 21 29 29 C 1.47937 * 108.51665 * 359.32881 * 15 14 12 30 30 C 1.54105 * 109.62765 * 60.85035 * 12 11 10 31 31 H 1.09004 * 109.18280 * 187.52393 * 30 12 11 32 32 C 1.43983 * 116.42162 * 154.30668 * 9 7 2 33 33 H 0.97002 * 120.00238 * 0.02562 * 1 2 3 34 34 H 1.08999 * 108.77520 * 308.93037 * 10 9 7 35 35 H 1.09005 * 108.77322 * 67.22577 * 10 9 7 36 36 H 1.08991 * 109.03820 * 199.55925 * 11 10 9 37 37 H 1.09006 * 109.03699 * 80.69150 * 11 10 9 38 38 H 1.09002 * 110.00796 * 151.68036 * 14 12 11 39 39 H 1.08994 * 110.00911 * 30.31796 * 14 12 11 40 40 H 1.09000 * 109.46954 * 310.57692 * 20 18 16 41 41 H 1.09001 * 109.47972 * 70.58272 * 20 18 16 42 42 H 1.09002 * 109.46166 * 190.01917 * 21 20 18 43 43 H 1.09003 * 109.46392 * 309.98270 * 21 20 18 44 44 H 1.09000 * 109.67548 * 69.75544 * 22 21 20 45 45 H 1.09009 * 109.67382 * 190.28540 * 22 21 20 46 46 H 1.08002 * 125.61082 * 179.97438 * 25 24 23 47 47 H 1.08993 * 110.57039 * 93.87912 * 29 15 14 48 48 H 1.09006 * 110.56351 * 216.73841 * 29 15 14 49 49 H 1.09004 * 108.11143 * 61.10352 * 32 9 7 50 50 H 1.08996 * 107.95441 * 304.51952 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0120 -1.2474 -0.4005 9 7 1.4248 -2.3306 0.5096 10 6 0.3978 -2.1288 1.5037 11 6 -0.0604 -3.4196 2.1527 12 6 -0.1677 -4.5560 1.1354 13 1 -0.9456 -4.3894 0.3902 14 6 -0.3856 -5.8613 1.9503 15 7 0.9521 -6.3965 2.2603 16 6 1.2083 -7.5127 2.9709 17 8 0.2948 -8.2213 3.3373 18 6 2.6299 -7.8804 3.3101 19 1 3.2475 -6.9823 3.3259 20 6 3.1731 -8.8626 2.2646 21 6 4.5082 -9.4353 2.7482 22 6 4.2633 -10.3738 3.9361 23 6 3.3956 -9.6558 4.9398 24 7 3.1933 -9.9653 6.2234 25 6 2.3743 -9.0932 6.7509 26 7 2.0278 -8.1922 5.8027 27 1 1.4324 -7.4350 5.9163 28 6 2.6728 -8.5494 4.6592 29 6 1.9666 -5.4987 1.6658 30 6 1.2132 -4.8170 0.5032 31 1 1.1044 -5.5319 -0.3125 32 6 1.9010 -3.5877 -0.0061 33 1 -0.4850 0.8400 -0.0004 34 1 0.7839 -1.4649 2.2772 35 1 -0.4605 -1.6525 1.0297 36 1 -1.0358 -3.2600 2.6119 37 1 0.6537 -3.7015 2.9267 38 1 -0.9472 -6.5824 1.3564 39 1 -0.9216 -5.6397 2.8731 40 1 2.4594 -9.6742 2.1232 41 1 3.3224 -8.3412 1.3190 42 1 4.9800 -9.9908 1.9377 43 1 5.1621 -8.6201 3.0583 44 1 3.7575 -11.2762 3.5926 45 1 5.2151 -10.6387 4.3967 46 1 2.0302 -9.0926 7.7746 47 1 2.2991 -4.7603 2.3953 48 1 2.8125 -6.0735 1.2885 49 1 2.9619 -3.6707 0.2298 50 1 1.7980 -3.5665 -1.0910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088102306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:11 Heat of formation + Delta-G solvation = 24.455444 kcal Electronic energy + Delta-G solvation = -31240.951063 eV Core-core repulsion = 27268.194891 eV Total energy + Delta-G solvation = -3972.756172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.33767 -41.61275 -39.86579 -37.44639 -37.23617 -34.39092 -34.04637 -33.13126 -32.06116 -31.10567 -29.92154 -29.25195 -27.19018 -25.85581 -24.63066 -23.65674 -23.22954 -23.05378 -22.51407 -20.55879 -19.89178 -19.42848 -18.97324 -18.61992 -18.18302 -17.11448 -16.87676 -16.48720 -16.08844 -15.89269 -15.69317 -15.53036 -15.38920 -15.22514 -14.77900 -14.63387 -14.57942 -14.42021 -14.16758 -13.80919 -13.61940 -13.48177 -13.37488 -13.01662 -12.95489 -12.82970 -12.52254 -12.32686 -12.22911 -12.03724 -11.87045 -11.83796 -11.77121 -11.50882 -11.29357 -11.21601 -11.13327 -10.84082 -10.72814 -10.49251 -9.76332 -9.14862 -8.65186 -7.68102 -5.34979 1.00816 1.40623 1.46324 1.49858 1.58654 1.84542 2.13359 2.18553 2.52953 3.23644 3.23987 3.45741 3.47505 3.68053 3.72803 3.77134 3.80326 3.86196 4.07309 4.13807 4.23420 4.30284 4.31865 4.39546 4.45898 4.49907 4.54119 4.61487 4.62964 4.71889 4.74511 4.89941 4.92739 4.97466 5.00328 5.04562 5.07700 5.11659 5.17282 5.21431 5.29021 5.30413 5.33987 5.41631 5.43545 5.72146 5.78591 5.96164 6.37006 6.45668 6.47188 6.97759 7.09396 7.23972 8.08249 8.25528 9.13979 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.002578 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.052194 B =10860.147088 C =11063.169757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.044 4.044 3 Si 0.955 3.045 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.280 4.280 8 H 0.066 0.934 9 N -0.598 5.598 10 C 0.166 3.834 11 C -0.110 4.110 12 C -0.078 4.078 13 H 0.093 0.907 14 C 0.117 3.883 15 N -0.610 5.610 16 C 0.531 3.469 17 O -0.576 6.576 18 C -0.020 4.020 19 H 0.119 0.881 20 C -0.101 4.101 21 C -0.107 4.107 22 C -0.037 4.037 23 C -0.009 4.009 24 N -0.525 5.525 25 C 0.183 3.817 26 N -0.551 5.551 27 H 0.426 0.574 28 C -0.021 4.021 29 C 0.111 3.889 30 C -0.094 4.094 31 H 0.096 0.904 32 C 0.174 3.826 33 H 0.248 0.752 34 H -0.011 1.011 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.242 0.758 47 H 0.071 0.929 48 H 0.110 0.890 49 H 0.028 0.972 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -17.537 7.215 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.241 4.241 3 Si 0.784 3.216 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.411 4.411 8 H 0.084 0.916 9 N -0.322 5.322 10 C 0.040 3.960 11 C -0.148 4.148 12 C -0.097 4.097 13 H 0.111 0.889 14 C -0.006 4.006 15 N -0.343 5.343 16 C 0.320 3.680 17 O -0.456 6.456 18 C -0.043 4.043 19 H 0.136 0.864 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.075 4.075 23 C -0.139 4.139 24 N -0.245 5.245 25 C -0.100 4.100 26 N -0.152 5.152 27 H 0.264 0.736 28 C -0.138 4.138 29 C -0.011 4.011 30 C -0.113 4.113 31 H 0.114 0.886 32 C 0.048 3.952 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.258 0.742 47 H 0.089 0.911 48 H 0.128 0.872 49 H 0.046 0.954 50 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 6.062 -18.631 7.902 21.126 hybrid contribution -0.902 2.497 -0.137 2.658 sum 5.160 -16.134 7.766 18.635 Atomic orbital electron populations 1.70173 1.06691 1.25600 1.53810 1.25622 0.95630 1.01301 1.01572 0.85471 0.78378 0.80178 0.77616 1.21092 1.22096 1.19798 1.19438 0.96719 0.88091 1.36847 0.91588 1.42945 1.43754 1.01794 1.43712 1.19964 0.92826 0.93878 0.89304 1.21510 1.00970 0.94749 0.97524 1.21986 0.97879 0.92926 0.96921 0.88885 1.22276 0.84498 0.94477 0.99300 1.48784 1.08762 1.24123 1.52603 1.20576 0.91494 0.78890 0.76994 1.90704 1.48231 1.51310 1.55333 1.19913 0.92684 1.00808 0.90856 0.86351 1.21576 0.97993 0.97519 0.96865 1.21585 0.95893 0.99449 0.97546 1.20072 0.97715 0.97424 0.92327 1.20986 1.03629 0.96389 0.92924 1.69976 1.18341 1.27194 1.08958 1.25714 0.98735 0.87975 0.97596 1.42942 1.37111 1.25642 1.09541 0.73573 1.20493 1.02800 1.01309 0.89229 1.22612 0.91517 0.92359 0.94593 1.21552 0.94892 0.96907 0.97973 0.88597 1.19355 0.96239 0.84260 0.95336 0.94200 0.99278 0.93796 0.91424 0.92480 0.91274 0.91542 0.92155 0.88163 0.88032 0.90487 0.90812 0.89902 0.74203 0.91089 0.87230 0.95388 0.97128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.22 10.89 21.65 0.24 -51.98 16 2 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 3 Si 0.96 43.46 29.62 68.60 2.03 45.49 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.28 -14.73 9.27 84.03 0.78 -13.95 16 8 H 0.07 3.39 7.95 -2.91 -0.02 3.37 16 9 N -0.60 -27.70 3.23 -722.42 -2.34 -30.04 16 10 C 0.17 7.49 5.07 86.31 0.44 7.93 16 11 C -0.11 -3.63 4.78 30.09 0.14 -3.48 16 12 C -0.08 -2.22 3.65 -9.62 -0.04 -2.26 16 13 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 14 C 0.12 2.92 6.25 87.04 0.54 3.46 16 15 N -0.61 -14.10 3.34 -808.39 -2.70 -16.80 16 16 C 0.53 13.03 6.80 87.66 0.60 13.62 16 17 O -0.58 -18.55 16.74 -3.02 -0.05 -18.60 16 18 C -0.02 -0.39 2.33 -12.17 -0.03 -0.42 16 19 H 0.12 1.88 7.18 -2.39 -0.02 1.86 16 20 C -0.10 -1.55 5.21 30.77 0.16 -1.39 16 21 C -0.11 -1.33 5.90 30.75 0.18 -1.15 16 22 C -0.04 -0.66 6.30 30.02 0.19 -0.47 16 23 C -0.01 -0.22 6.98 41.62 0.29 0.07 16 24 N -0.53 -13.56 11.25 -187.85 -2.11 -15.67 16 25 C 0.18 3.66 13.05 180.11 2.35 6.01 16 26 N -0.55 -11.31 6.03 -186.45 -1.12 -12.43 16 27 H 0.43 7.33 8.96 -92.71 -0.83 6.50 16 28 C -0.02 -0.47 5.91 41.16 0.24 -0.23 16 29 C 0.11 2.37 4.95 86.58 0.43 2.80 16 30 C -0.09 -2.52 2.84 -10.97 -0.03 -2.55 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 C 0.17 6.26 5.75 85.81 0.49 6.76 16 33 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 34 H -0.01 -0.55 8.08 -2.39 -0.02 -0.56 16 35 H 0.04 2.35 5.82 -2.38 -0.01 2.34 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.77 6.60 -2.38 -0.02 1.76 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.69 7.79 -2.39 -0.02 1.67 16 40 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 41 H 0.10 1.12 7.86 -2.39 -0.02 1.10 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.24 2.63 8.06 -2.91 -0.02 2.61 16 47 H 0.07 1.67 7.16 -2.39 -0.02 1.65 16 48 H 0.11 1.68 7.42 -2.38 -0.02 1.66 16 49 H 0.03 0.96 7.81 -2.38 -0.02 0.94 16 50 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 Total: -1.00 -72.13 382.68 1.23 -70.90 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.12 Total: 16.36 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 7.16 Total: 12.77 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -8.04 Total: -126.93 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -72.13 1.23 -70.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088102306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.357 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds