Wall clock time and date at job start Wed Apr 1 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99998 * 2 1 4 4 H 1.48507 * 109.47058 * 265.63569 * 3 2 1 5 5 H 1.48503 * 109.47374 * 25.63025 * 3 2 1 6 6 H 1.48498 * 109.47454 * 145.63298 * 3 2 1 7 7 C 1.38817 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 338.24401 * 7 2 1 9 9 N 1.36939 * 119.99648 * 158.23943 * 7 2 1 10 10 C 1.44522 * 117.26456 * 146.24574 * 9 7 2 11 11 C 1.51338 * 113.16012 * 151.15378 * 10 9 7 12 12 C 1.49844 * 114.52805 * 35.10987 * 11 10 9 13 13 H 1.09001 * 108.54713 * 188.22247 * 12 11 10 14 14 C 1.53844 * 114.34960 * 66.21192 * 12 11 10 15 15 N 1.48092 * 103.41682 * 195.56309 * 14 12 11 16 16 C 1.34776 * 125.74569 * 204.44693 * 15 14 12 17 17 O 1.21278 * 119.99989 * 5.02602 * 16 15 14 18 18 C 1.50703 * 119.99806 * 185.01904 * 16 15 14 19 19 H 1.09004 * 109.67775 * 335.02079 * 18 16 15 20 20 C 1.53395 * 109.67830 * 95.57628 * 18 16 15 21 21 C 1.53135 * 109.44390 * 169.37108 * 20 18 16 22 22 C 1.53349 * 109.52825 * 289.99251 * 21 20 18 23 23 C 1.50865 * 108.41519 * 49.99144 * 22 21 20 24 24 N 1.33568 * 128.03532 * 163.24591 * 23 22 21 25 25 C 1.30760 * 109.15140 * 180.09024 * 24 23 22 26 26 N 1.35312 * 108.76085 * 359.97438 * 25 24 23 27 27 H 0.97006 * 126.49437 * 180.02562 * 26 25 24 28 28 C 1.35027 * 123.98556 * 343.29378 * 23 22 21 29 29 C 1.47464 * 108.50920 * 24.42540 * 15 14 12 30 30 C 1.54402 * 113.82031 * 309.86315 * 12 11 10 31 31 H 1.08994 * 113.65801 * 286.18661 * 30 12 11 32 32 C 1.44404 * 117.26892 * 326.51177 * 9 7 2 33 33 H 0.96997 * 120.00063 * 0.02562 * 1 2 3 34 34 H 1.09005 * 108.74737 * 272.09883 * 10 9 7 35 35 H 1.09003 * 108.74718 * 30.20320 * 10 9 7 36 36 H 1.09000 * 108.46577 * 273.80678 * 11 10 9 37 37 H 1.08993 * 108.35031 * 156.32777 * 11 10 9 38 38 H 1.09008 * 110.63148 * 77.08112 * 14 12 11 39 39 H 1.08996 * 110.77049 * 314.11586 * 14 12 11 40 40 H 1.09004 * 109.47578 * 289.35536 * 20 18 16 41 41 H 1.08996 * 109.47541 * 49.37686 * 20 18 16 42 42 H 1.08995 * 109.46003 * 169.97639 * 21 20 18 43 43 H 1.08998 * 109.45529 * 50.00209 * 21 20 18 44 44 H 1.09008 * 109.67301 * 290.26300 * 22 21 20 45 45 H 1.09000 * 109.67669 * 169.72515 * 22 21 20 46 46 H 1.07997 * 125.62096 * 179.97438 * 25 24 23 47 47 H 1.08996 * 110.04462 * 242.80157 * 29 15 14 48 48 H 1.09010 * 110.03662 * 121.34835 * 29 15 14 49 49 H 1.09008 * 108.74205 * 335.32049 * 32 9 7 50 50 H 1.08995 * 108.74664 * 93.41324 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5900 1.9931 -1.3961 5 1 1.4045 2.6776 0.6056 6 1 3.4985 1.4686 0.7903 7 6 2.0103 -1.2022 0.0005 8 1 1.5280 -2.1040 0.3476 9 7 3.3065 -1.2446 -0.4391 10 6 4.1953 -2.1815 0.2096 11 6 5.3052 -2.6727 -0.6944 12 6 5.8198 -1.6490 -1.6601 13 1 6.5028 -2.1393 -2.3538 14 6 6.5406 -0.4606 -1.0006 15 7 6.5950 0.5508 -2.0810 16 6 7.4933 1.5507 -2.1790 17 8 8.4079 1.6241 -1.3859 18 6 7.3614 2.5775 -3.2742 19 1 6.8113 2.1509 -4.1130 20 6 6.6186 3.8091 -2.7409 21 6 6.7177 4.9459 -3.7620 22 6 8.1588 5.4680 -3.8097 23 6 9.0874 4.2898 -3.9696 24 7 10.3660 4.2962 -4.3558 25 6 10.8164 3.0687 -4.3685 26 7 9.8215 2.2360 -3.9842 27 1 9.8758 1.2709 -3.9033 28 6 8.7301 3.0095 -3.7322 29 6 5.5010 0.2793 -3.0319 30 6 4.7104 -0.9367 -2.4638 31 1 4.2644 -1.5588 -3.2397 32 6 3.6723 -0.3453 -1.5081 33 1 -0.4850 0.8400 -0.0004 34 1 4.6402 -1.6977 1.0793 35 1 3.6139 -3.0391 0.5481 36 1 4.9361 -3.5274 -1.2611 37 1 6.1342 -3.0058 -0.0700 38 1 7.5459 -0.7454 -0.6902 39 1 5.9697 -0.0852 -0.1514 40 1 5.5705 3.5585 -2.5767 41 1 7.0685 4.1255 -1.7999 42 1 6.0478 5.7549 -3.4709 43 1 6.4330 4.5753 -4.7467 44 1 8.3894 5.9940 -2.8832 45 1 8.2760 6.1451 -4.6558 46 1 11.8176 2.7688 -4.6407 47 1 5.9101 0.0340 -4.0119 48 1 4.8468 1.1481 -3.1065 49 1 2.7766 -0.0938 -2.0761 50 1 4.0768 0.5689 -1.0738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088102307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:16 Heat of formation + Delta-G solvation = 45.219599 kcal Electronic energy + Delta-G solvation = -31849.765230 eV Core-core repulsion = 27877.909459 eV Total energy + Delta-G solvation = -3971.855770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.51448 -40.56654 -38.75885 -36.57528 -35.74302 -33.42371 -33.06655 -31.36251 -31.22299 -30.25584 -29.12469 -27.86577 -25.67868 -24.89604 -23.78287 -22.43846 -22.43408 -21.76357 -21.51174 -19.58301 -19.08011 -18.50905 -17.77065 -17.29294 -16.79335 -16.29536 -15.67704 -15.30262 -15.04800 -14.80512 -14.64711 -14.53233 -14.21888 -13.90273 -13.75610 -13.61684 -13.50525 -13.22599 -13.03234 -12.73782 -12.62224 -12.46259 -12.30049 -12.18236 -11.67248 -11.55005 -11.24065 -11.15013 -11.11884 -11.03690 -10.68060 -10.57865 -10.36437 -10.21422 -10.09509 -9.99223 -9.82384 -9.67914 -9.55247 -8.68874 -8.58941 -8.31652 -6.91685 -6.06662 -3.48051 1.83619 2.43287 2.83293 2.93371 3.01015 3.23728 3.42262 3.47031 4.16484 4.29566 4.42913 4.46184 4.50064 4.58521 4.68419 4.84317 4.87266 4.94994 5.00114 5.03989 5.10309 5.21254 5.25631 5.28985 5.41051 5.45397 5.48902 5.56396 5.64693 5.67760 5.72459 5.76359 5.80399 5.90492 5.90657 5.93327 6.05865 6.06504 6.10642 6.11989 6.24992 6.34261 6.49245 6.58402 6.64106 6.66164 6.81445 7.19486 7.42690 7.91325 8.01182 8.02327 8.30259 8.99160 9.67099 9.94026 11.09126 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.003594 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.922689 B = 7787.876079 C = 9078.743948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.035 3.965 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.279 4.279 8 H 0.082 0.918 9 N -0.598 5.598 10 C 0.159 3.841 11 C -0.116 4.116 12 C -0.085 4.085 13 H 0.068 0.932 14 C 0.112 3.888 15 N -0.614 5.614 16 C 0.528 3.472 17 O -0.537 6.537 18 C -0.025 4.025 19 H 0.101 0.899 20 C -0.106 4.106 21 C -0.115 4.115 22 C -0.035 4.035 23 C 0.012 3.988 24 N -0.487 5.487 25 C 0.179 3.821 26 N -0.551 5.551 27 H 0.419 0.581 28 C -0.002 4.002 29 C 0.097 3.903 30 C -0.107 4.107 31 H 0.103 0.897 32 C 0.151 3.849 33 H 0.264 0.736 34 H 0.011 0.989 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.208 0.792 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.382 2.498 -11.040 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.202 1.202 7 C -0.407 4.407 8 H 0.100 0.900 9 N -0.322 5.322 10 C 0.034 3.966 11 C -0.155 4.155 12 C -0.104 4.104 13 H 0.087 0.913 14 C -0.009 4.009 15 N -0.348 5.348 16 C 0.315 3.685 17 O -0.414 6.414 18 C -0.048 4.048 19 H 0.119 0.881 20 C -0.145 4.145 21 C -0.153 4.153 22 C -0.073 4.073 23 C -0.119 4.119 24 N -0.206 5.206 25 C -0.104 4.104 26 N -0.152 5.152 27 H 0.256 0.744 28 C -0.120 4.120 29 C -0.027 4.027 30 C -0.127 4.127 31 H 0.122 0.878 32 C 0.025 3.975 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.224 0.776 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 17.275 3.422 -10.822 20.670 hybrid contribution 0.086 -0.363 0.288 0.471 sum 17.361 3.059 -10.534 20.536 Atomic orbital electron populations 1.69856 1.05888 1.26802 1.51702 1.25399 0.95118 0.97594 0.98439 0.87018 0.79586 0.84549 0.77686 1.21212 1.22995 1.20247 1.18954 0.86241 0.94738 1.40789 0.90022 1.43020 1.09175 1.43619 1.36363 1.19992 0.90486 0.93212 0.92941 1.20700 0.98954 0.97733 0.98088 1.21167 0.96505 0.95003 0.97721 0.91313 1.22267 1.00745 0.87402 0.90511 1.48797 1.30190 1.29222 1.26577 1.20168 0.81233 0.80922 0.86137 1.90715 1.32612 1.74407 1.43672 1.19851 0.91898 0.96114 0.96933 0.88072 1.21547 1.00315 0.92689 0.99907 1.21599 0.96361 0.97896 0.99410 1.19966 0.91160 0.93546 1.02628 1.20444 0.92240 0.93154 1.06018 1.69971 1.10019 1.20631 1.19949 1.24975 0.95377 0.85147 1.04862 1.42858 1.10553 1.10634 1.51152 0.74397 1.20232 0.89956 0.92021 1.09772 1.22635 0.88526 0.99467 0.92024 1.22884 0.96039 0.95083 0.98703 0.87848 1.20817 0.96160 0.91812 0.88751 0.92610 0.97075 0.92936 0.91690 0.91952 0.90657 0.90399 0.90133 0.90405 0.90253 0.91204 0.90505 0.90280 0.77573 0.91448 0.90742 0.91587 0.97141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.97 55.49 0.78 -25.93 16 2 C 0.03 0.97 5.04 -17.43 -0.09 0.88 16 3 Si 0.88 21.83 24.19 -169.99 -4.11 17.72 16 4 H -0.29 -6.56 6.70 56.52 0.38 -6.19 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 6 H -0.28 -7.00 7.09 56.52 0.40 -6.60 16 7 C -0.28 -7.46 9.59 -15.06 -0.14 -7.60 16 8 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 9 N -0.60 -13.30 2.85 -177.44 -0.51 -13.81 16 10 C 0.16 2.96 5.94 -5.94 -0.04 2.92 16 11 C -0.12 -1.63 5.45 -29.13 -0.16 -1.79 16 12 C -0.08 -1.15 2.69 -91.01 -0.24 -1.39 16 13 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 14 C 0.11 1.69 5.86 -2.73 -0.02 1.67 16 15 N -0.61 -8.73 3.33 -169.36 -0.56 -9.29 16 16 C 0.53 7.73 6.79 -10.98 -0.07 7.66 16 17 O -0.54 -9.63 16.68 5.56 0.09 -9.54 16 18 C -0.03 -0.30 2.60 -92.74 -0.24 -0.55 16 19 H 0.10 1.02 7.05 -51.93 -0.37 0.65 16 20 C -0.11 -1.22 5.22 -26.46 -0.14 -1.36 16 21 C -0.11 -1.07 5.90 -26.48 -0.16 -1.23 16 22 C -0.03 -0.37 6.30 -27.62 -0.17 -0.54 16 23 C 0.01 0.16 6.98 -82.90 -0.58 -0.42 16 24 N -0.49 -6.59 11.25 -10.74 -0.12 -6.71 16 25 C 0.18 1.90 13.05 -89.91 -1.17 0.72 16 26 N -0.55 -5.93 6.04 -10.28 -0.06 -5.99 16 27 H 0.42 3.65 8.96 -40.82 -0.37 3.28 16 28 C 0.00 -0.03 5.91 -81.85 -0.48 -0.51 16 29 C 0.10 1.22 5.08 -2.03 -0.01 1.21 16 30 C -0.11 -1.56 3.98 -88.41 -0.35 -1.92 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 C 0.15 2.99 2.83 -5.16 -0.01 2.98 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.05 0.98 7.86 -51.93 -0.41 0.57 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.09 8.02 -51.92 -0.42 0.67 16 39 H 0.08 1.40 7.10 -51.93 -0.37 1.03 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 44 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 48 H 0.07 0.96 7.74 -51.92 -0.40 0.55 16 49 H 0.07 1.44 6.57 -51.92 -0.34 1.10 16 50 H 0.01 0.24 4.05 -51.93 -0.21 0.03 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -34.24 377.65 -10.84 -45.07 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.94 Total: 2.06 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -4.08 Total: 0.73 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.48 Total: -61.73 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.11 Total: 17.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.24 -10.84 -45.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088102307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.291 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds