Wall clock time and date at job start Wed Apr 1 2020 02:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99998 * 2 1 4 4 H 1.48507 * 109.47058 * 265.63569 * 3 2 1 5 5 H 1.48503 * 109.47374 * 25.63025 * 3 2 1 6 6 H 1.48498 * 109.47454 * 145.63298 * 3 2 1 7 7 C 1.38817 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99924 * 338.24401 * 7 2 1 9 9 N 1.36939 * 119.99648 * 158.23943 * 7 2 1 10 10 C 1.44522 * 117.26456 * 146.24574 * 9 7 2 11 11 C 1.51338 * 113.16012 * 151.15378 * 10 9 7 12 12 C 1.49844 * 114.52805 * 35.10987 * 11 10 9 13 13 H 1.09001 * 108.54713 * 188.22247 * 12 11 10 14 14 C 1.53844 * 114.34960 * 66.21192 * 12 11 10 15 15 N 1.48092 * 103.41682 * 195.56309 * 14 12 11 16 16 C 1.34776 * 125.74569 * 204.44693 * 15 14 12 17 17 O 1.21278 * 119.99989 * 5.02602 * 16 15 14 18 18 C 1.50703 * 119.99806 * 185.01904 * 16 15 14 19 19 H 1.09004 * 109.67775 * 335.02079 * 18 16 15 20 20 C 1.53395 * 109.67830 * 95.57628 * 18 16 15 21 21 C 1.53135 * 109.44390 * 169.37108 * 20 18 16 22 22 C 1.53349 * 109.52825 * 289.99251 * 21 20 18 23 23 C 1.50865 * 108.41519 * 49.99144 * 22 21 20 24 24 N 1.33568 * 128.03532 * 163.24591 * 23 22 21 25 25 C 1.30760 * 109.15140 * 180.09024 * 24 23 22 26 26 N 1.35312 * 108.76085 * 359.97438 * 25 24 23 27 27 H 0.97006 * 126.49437 * 180.02562 * 26 25 24 28 28 C 1.35027 * 123.98556 * 343.29378 * 23 22 21 29 29 C 1.47464 * 108.50920 * 24.42540 * 15 14 12 30 30 C 1.54402 * 113.82031 * 309.86315 * 12 11 10 31 31 H 1.08994 * 113.65801 * 286.18661 * 30 12 11 32 32 C 1.44404 * 117.26892 * 326.51177 * 9 7 2 33 33 H 0.96997 * 120.00063 * 0.02562 * 1 2 3 34 34 H 1.09005 * 108.74737 * 272.09883 * 10 9 7 35 35 H 1.09003 * 108.74718 * 30.20320 * 10 9 7 36 36 H 1.09000 * 108.46577 * 273.80678 * 11 10 9 37 37 H 1.08993 * 108.35031 * 156.32777 * 11 10 9 38 38 H 1.09008 * 110.63148 * 77.08112 * 14 12 11 39 39 H 1.08996 * 110.77049 * 314.11586 * 14 12 11 40 40 H 1.09004 * 109.47578 * 289.35536 * 20 18 16 41 41 H 1.08996 * 109.47541 * 49.37686 * 20 18 16 42 42 H 1.08995 * 109.46003 * 169.97639 * 21 20 18 43 43 H 1.08998 * 109.45529 * 50.00209 * 21 20 18 44 44 H 1.09008 * 109.67301 * 290.26300 * 22 21 20 45 45 H 1.09000 * 109.67669 * 169.72515 * 22 21 20 46 46 H 1.07997 * 125.62096 * 179.97438 * 25 24 23 47 47 H 1.08996 * 110.04462 * 242.80157 * 29 15 14 48 48 H 1.09010 * 110.03662 * 121.34835 * 29 15 14 49 49 H 1.09008 * 108.74205 * 335.32049 * 32 9 7 50 50 H 1.08995 * 108.74664 * 93.41324 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5900 1.9931 -1.3961 5 1 1.4045 2.6776 0.6056 6 1 3.4985 1.4686 0.7903 7 6 2.0103 -1.2022 0.0005 8 1 1.5280 -2.1040 0.3476 9 7 3.3065 -1.2446 -0.4391 10 6 4.1953 -2.1815 0.2096 11 6 5.3052 -2.6727 -0.6944 12 6 5.8198 -1.6490 -1.6601 13 1 6.5028 -2.1393 -2.3538 14 6 6.5406 -0.4606 -1.0006 15 7 6.5950 0.5508 -2.0810 16 6 7.4933 1.5507 -2.1790 17 8 8.4079 1.6241 -1.3859 18 6 7.3614 2.5775 -3.2742 19 1 6.8113 2.1509 -4.1130 20 6 6.6186 3.8091 -2.7409 21 6 6.7177 4.9459 -3.7620 22 6 8.1588 5.4680 -3.8097 23 6 9.0874 4.2898 -3.9696 24 7 10.3660 4.2962 -4.3558 25 6 10.8164 3.0687 -4.3685 26 7 9.8215 2.2360 -3.9842 27 1 9.8758 1.2709 -3.9033 28 6 8.7301 3.0095 -3.7322 29 6 5.5010 0.2793 -3.0319 30 6 4.7104 -0.9367 -2.4638 31 1 4.2644 -1.5588 -3.2397 32 6 3.6723 -0.3453 -1.5081 33 1 -0.4850 0.8400 -0.0004 34 1 4.6402 -1.6977 1.0793 35 1 3.6139 -3.0391 0.5481 36 1 4.9361 -3.5274 -1.2611 37 1 6.1342 -3.0058 -0.0700 38 1 7.5459 -0.7454 -0.6902 39 1 5.9697 -0.0852 -0.1514 40 1 5.5705 3.5585 -2.5767 41 1 7.0685 4.1255 -1.7999 42 1 6.0478 5.7549 -3.4709 43 1 6.4330 4.5753 -4.7467 44 1 8.3894 5.9940 -2.8832 45 1 8.2760 6.1451 -4.6558 46 1 11.8176 2.7688 -4.6407 47 1 5.9101 0.0340 -4.0119 48 1 4.8468 1.1481 -3.1065 49 1 2.7766 -0.0938 -2.0761 50 1 4.0768 0.5689 -1.0738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088102307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:15 Heat of formation + Delta-G solvation = 22.925470 kcal Electronic energy + Delta-G solvation = -31850.731976 eV Core-core repulsion = 27877.909459 eV Total energy + Delta-G solvation = -3972.822516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.36234 -41.72417 -39.98119 -37.48211 -37.22630 -34.78556 -34.14709 -33.05354 -32.58938 -31.20689 -29.96405 -29.08240 -27.13025 -26.32757 -24.90952 -23.76138 -23.26509 -22.94979 -22.62476 -20.61132 -19.96184 -19.87965 -18.79500 -18.55014 -18.29949 -17.59239 -16.93909 -16.59430 -16.15247 -16.00738 -15.94138 -15.53888 -15.34131 -15.12833 -14.93663 -14.77477 -14.57722 -14.41462 -14.39750 -14.17685 -13.82178 -13.78555 -13.48387 -13.21476 -13.04909 -12.71109 -12.63783 -12.41649 -12.27414 -12.19213 -11.96122 -11.90126 -11.81295 -11.68214 -11.40595 -11.18458 -11.07188 -10.85927 -10.75328 -10.64788 -9.80599 -9.17807 -8.79463 -8.23741 -5.59988 0.98107 1.22720 1.33611 1.36762 1.44851 1.81718 2.11850 2.16438 2.35495 3.00633 3.22001 3.32221 3.43325 3.58621 3.63888 3.64392 3.73608 3.79395 4.01289 4.09721 4.17791 4.23839 4.24687 4.35412 4.38046 4.41720 4.43487 4.48115 4.52861 4.64300 4.66180 4.71407 4.81913 4.85994 4.90909 4.95123 4.97757 5.04604 5.12148 5.13008 5.16129 5.23755 5.24293 5.26069 5.32148 5.42837 5.74322 5.93382 6.13328 6.33569 6.48037 6.91802 7.03331 7.08099 7.71907 7.93043 8.96391 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.003594 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.922689 B = 7787.876079 C = 9078.743948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.016 4.016 3 Si 0.938 3.062 4 H -0.256 1.256 5 H -0.311 1.311 6 H -0.290 1.290 7 C -0.267 4.267 8 H 0.050 0.950 9 N -0.608 5.608 10 C 0.153 3.847 11 C -0.108 4.108 12 C -0.077 4.077 13 H 0.108 0.892 14 C 0.112 3.888 15 N -0.614 5.614 16 C 0.528 3.472 17 O -0.577 6.577 18 C -0.018 4.018 19 H 0.127 0.873 20 C -0.108 4.108 21 C -0.105 4.105 22 C -0.036 4.036 23 C -0.009 4.009 24 N -0.525 5.525 25 C 0.188 3.812 26 N -0.548 5.548 27 H 0.428 0.572 28 C -0.018 4.018 29 C 0.097 3.903 30 C -0.101 4.101 31 H 0.127 0.873 32 C 0.149 3.851 33 H 0.263 0.737 34 H -0.001 1.001 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.246 0.754 47 H 0.112 0.888 48 H 0.073 0.927 49 H 0.043 0.957 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.639 2.014 -13.806 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.212 4.212 3 Si 0.768 3.232 4 H -0.181 1.181 5 H -0.239 1.239 6 H -0.216 1.216 7 C -0.397 4.397 8 H 0.067 0.933 9 N -0.332 5.332 10 C 0.028 3.972 11 C -0.147 4.147 12 C -0.096 4.096 13 H 0.126 0.874 14 C -0.010 4.010 15 N -0.347 5.347 16 C 0.317 3.683 17 O -0.456 6.456 18 C -0.040 4.040 19 H 0.145 0.855 20 C -0.146 4.146 21 C -0.143 4.143 22 C -0.075 4.075 23 C -0.139 4.139 24 N -0.245 5.245 25 C -0.095 4.095 26 N -0.149 5.149 27 H 0.267 0.733 28 C -0.136 4.136 29 C -0.025 4.025 30 C -0.120 4.120 31 H 0.145 0.855 32 C 0.023 3.977 33 H 0.073 0.927 34 H 0.017 0.983 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.262 0.738 47 H 0.130 0.870 48 H 0.091 0.909 49 H 0.061 0.939 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 19.548 2.914 -13.621 24.003 hybrid contribution -0.579 -0.306 1.251 1.412 sum 18.969 2.608 -12.370 22.796 Atomic orbital electron populations 1.69962 1.07335 1.27364 1.54519 1.25912 0.95587 1.00394 0.99309 0.86086 0.77351 0.80897 0.78870 1.18121 1.23945 1.21627 1.18948 0.88086 0.93465 1.39226 0.93275 1.43192 1.08040 1.44437 1.37516 1.20138 0.91327 0.91972 0.93775 1.20627 0.97836 0.98206 0.98017 1.21182 0.96403 0.94220 0.97771 0.87416 1.22166 1.00593 0.88261 0.90017 1.48883 1.30353 1.28917 1.26528 1.20629 0.80542 0.80948 0.86184 1.90694 1.34353 1.75246 1.45331 1.19872 0.92181 0.95334 0.96610 0.85492 1.21567 1.00004 0.93453 0.99602 1.21568 0.95804 0.97531 0.99398 1.20036 0.91630 0.93200 1.02595 1.20867 0.92600 0.94130 1.06293 1.69974 1.10560 1.22326 1.21642 1.25767 0.96474 0.84447 1.02853 1.42889 1.10150 1.11154 1.50755 0.73285 1.20342 0.90640 0.92223 1.10389 1.22765 0.87985 0.98469 0.93262 1.22826 0.94810 0.96337 0.98039 0.85493 1.20798 0.96852 0.91286 0.88732 0.92742 0.98342 0.93813 0.89985 0.89447 0.90176 0.94167 0.89957 0.92734 0.88685 0.89811 0.91215 0.89434 0.73845 0.86982 0.90862 0.93885 0.98629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.96 13.97 21.65 0.30 -57.66 16 2 C -0.02 -0.89 5.04 84.86 0.43 -0.46 16 3 Si 0.94 46.18 24.19 68.60 1.66 47.84 16 4 H -0.26 -11.23 6.70 99.48 0.67 -10.56 16 5 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 6 H -0.29 -14.69 7.09 99.48 0.70 -13.99 16 7 C -0.27 -14.72 9.59 84.03 0.81 -13.91 16 8 H 0.05 2.98 7.98 -2.91 -0.02 2.95 16 9 N -0.61 -27.04 2.85 -715.29 -2.04 -29.08 16 10 C 0.15 5.60 5.94 86.20 0.51 6.11 16 11 C -0.11 -2.72 5.45 29.04 0.16 -2.56 16 12 C -0.08 -1.77 2.69 -11.05 -0.03 -1.80 16 13 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 14 C 0.11 3.11 5.86 86.36 0.51 3.62 16 15 N -0.61 -15.68 3.33 -808.12 -2.69 -18.37 16 16 C 0.53 14.38 6.79 87.66 0.60 14.98 16 17 O -0.58 -20.15 16.68 -3.02 -0.05 -20.20 16 18 C -0.02 -0.38 2.60 -12.17 -0.03 -0.41 16 19 H 0.13 2.02 7.05 -2.38 -0.02 2.00 16 20 C -0.11 -2.30 5.22 30.77 0.16 -2.14 16 21 C -0.11 -1.73 5.90 30.76 0.18 -1.55 16 22 C -0.04 -0.73 6.30 30.02 0.19 -0.54 16 23 C -0.01 -0.22 6.98 41.61 0.29 0.07 16 24 N -0.53 -13.47 11.25 -187.90 -2.11 -15.59 16 25 C 0.19 3.54 13.05 180.10 2.35 5.89 16 26 N -0.55 -10.48 6.04 -186.44 -1.13 -11.61 16 27 H 0.43 6.28 8.96 -92.70 -0.83 5.45 16 28 C -0.02 -0.42 5.91 41.14 0.24 -0.18 16 29 C 0.10 2.03 5.08 87.15 0.44 2.47 16 30 C -0.10 -2.56 3.98 -9.36 -0.04 -2.60 16 31 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 32 C 0.15 5.71 2.83 86.77 0.25 5.96 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 35 H 0.04 1.65 7.86 -2.39 -0.02 1.63 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.14 8.02 -2.38 -0.02 2.12 16 39 H 0.04 1.42 7.10 -2.39 -0.02 1.41 16 40 H 0.08 1.70 8.14 -2.38 -0.02 1.69 16 41 H 0.05 1.41 8.08 -2.39 -0.02 1.39 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.17 8.11 -2.39 -0.02 1.15 16 44 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.25 2.25 8.06 -2.91 -0.02 2.22 16 47 H 0.11 1.46 8.05 -2.39 -0.02 1.44 16 48 H 0.07 1.59 7.74 -2.38 -0.02 1.58 16 49 H 0.04 1.84 6.57 -2.38 -0.02 1.82 16 50 H 0.00 -0.15 4.05 -2.39 -0.01 -0.16 16 Total: -1.00 -78.70 377.65 1.03 -77.67 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.08 Total: 14.05 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 7.01 Total: 12.94 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -7.67 Total: -132.31 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.66 Total: 47.84 kcal Total: -78.70 1.03 -77.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088102307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.592 kcal (2) G-P(sol) polarization free energy of solvation -78.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds