Wall clock time and date at job start Wed Apr 1 2020 02:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48498 * 109.47078 * 239.99215 * 3 2 1 5 5 H 1.48500 * 109.47225 * 359.97438 * 3 2 1 6 6 H 1.48512 * 109.47228 * 119.99664 * 3 2 1 7 7 C 1.38818 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00175 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99465 * 0.02562 * 7 2 1 10 10 C 1.49474 * 125.96292 * 179.97438 * 9 7 2 11 11 C 1.48252 * 103.95940 * 175.83778 * 10 9 7 12 12 H 1.08996 * 102.85193 * 289.33738 * 11 10 9 13 13 C 1.56775 * 103.72544 * 33.17757 * 11 10 9 14 14 H 1.08992 * 114.14350 * 70.88926 * 13 11 10 15 15 C 1.49358 * 125.96606 * 359.96103 * 9 7 2 16 16 C 1.53809 * 101.29145 * 192.74016 * 13 11 10 17 17 H 1.08998 * 113.25588 * 155.90610 * 16 13 11 18 18 C 1.53988 * 109.18387 * 27.79981 * 16 13 11 19 19 C 1.52307 * 109.95346 * 284.66801 * 18 16 13 20 20 C 1.48241 * 132.92551 * 166.45111 * 11 10 9 21 21 H 1.09002 * 112.97220 * 20.14675 * 20 11 10 22 22 C 1.55170 * 109.73163 * 253.10859 * 20 11 10 23 23 N 1.48719 * 105.58385 * 292.05820 * 22 20 11 24 24 C 1.34781 * 123.24289 * 212.45365 * 23 22 20 25 25 O 1.21281 * 119.99843 * 179.25005 * 24 23 22 26 26 C 1.50693 * 119.99704 * 359.25328 * 24 23 22 27 27 C 1.53005 * 109.46920 * 179.97438 * 26 24 23 28 28 N 1.46502 * 109.47090 * 180.02562 * 27 26 24 29 29 C 1.34946 * 126.03737 * 124.99612 * 28 27 26 30 30 C 1.35316 * 107.74345 * 179.97438 * 29 28 27 31 31 C 1.39866 * 107.92401 * 0.02562 * 30 29 28 32 32 N 1.30837 * 108.19940 * 359.74011 * 31 30 29 33 33 H 0.97004 * 120.00139 * 0.02562 * 1 2 3 34 34 H 1.09003 * 110.53060 * 57.22070 * 10 9 7 35 35 H 1.08997 * 110.53184 * 294.45972 * 10 9 7 36 36 H 1.08993 * 110.73718 * 34.82663 * 15 9 7 37 37 H 1.08992 * 110.89312 * 271.57192 * 15 9 7 38 38 H 1.08999 * 109.55074 * 44.15200 * 18 16 13 39 39 H 1.08997 * 109.55218 * 164.44957 * 18 16 13 40 40 H 1.09004 * 109.40436 * 277.83352 * 19 18 16 41 41 H 1.08997 * 111.22471 * 155.65258 * 19 18 16 42 42 H 1.08999 * 110.18654 * 50.47262 * 22 20 11 43 43 H 1.09004 * 110.18391 * 172.34720 * 22 20 11 44 44 H 1.08995 * 109.47481 * 299.99522 * 26 24 23 45 45 H 1.09000 * 109.47485 * 59.99807 * 26 24 23 46 46 H 1.09007 * 109.46808 * 299.99701 * 27 26 24 47 47 H 1.09000 * 109.47144 * 59.99666 * 27 26 24 48 48 H 1.08003 * 126.13035 * 0.02562 * 29 28 27 49 49 H 1.08003 * 126.03745 * 179.97438 * 30 29 28 50 50 H 1.08001 * 125.90297 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9343 -3.7532 0.0005 11 6 0.7694 -4.6643 0.1050 12 1 0.4290 -4.5062 1.1283 13 6 -0.3620 -3.9126 -0.6778 14 1 -0.2137 -3.8834 -1.7571 15 6 -0.1600 -2.5433 0.0008 16 6 -1.6035 -4.7195 -0.2612 17 1 -2.5314 -4.1530 -0.3403 18 6 -1.3637 -5.3347 1.1299 19 6 -0.4171 -6.5225 1.0168 20 6 0.6083 -6.1241 -0.0960 21 1 1.5499 -6.6692 -0.0294 22 6 -0.1526 -6.3896 -1.4221 23 7 -1.5353 -5.8908 -1.1961 24 6 -2.6234 -6.4467 -1.7649 25 8 -3.7261 -6.0002 -1.5286 26 6 -2.4700 -7.6229 -2.6942 27 6 -3.8477 -8.0583 -3.1976 28 7 -3.6986 -9.2022 -4.1006 29 6 -4.3153 -10.3963 -3.9779 30 6 -3.9135 -11.1758 -5.0083 31 6 -3.0202 -10.4330 -5.7872 32 7 -2.8947 -9.2480 -5.2469 33 1 -0.4850 0.8401 -0.0004 34 1 2.5948 -3.8773 0.8588 35 1 2.4760 -3.9302 -0.9286 36 1 -0.6309 -1.7511 -0.5811 37 1 -0.5493 -2.5560 1.0188 38 1 -0.9142 -4.5893 1.7859 39 1 -2.3128 -5.6676 1.5501 40 1 -0.9792 -7.4060 0.7140 41 1 0.0997 -6.7063 1.9587 42 1 0.3097 -5.8348 -2.2385 43 1 -0.1573 -7.4563 -1.6460 44 1 -1.8467 -7.3376 -3.5416 45 1 -2.0009 -8.4492 -2.1601 46 1 -4.4707 -8.3439 -2.3498 47 1 -4.3172 -7.2321 -3.7315 48 1 -5.0064 -10.6788 -3.1975 49 1 -4.2265 -12.1923 -5.1958 50 1 -2.5231 -10.7767 -6.6823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089777842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:38 Heat of formation + Delta-G solvation = 128.129282 kcal Electronic energy + Delta-G solvation = -30961.750874 eV Core-core repulsion = 26993.490337 eV Total energy + Delta-G solvation = -3968.260537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.72376 -41.32099 -38.95867 -35.93495 -34.48775 -33.16092 -31.92956 -31.43219 -30.59086 -29.68075 -29.08679 -27.21826 -25.87559 -24.53526 -23.94819 -22.09881 -21.47476 -21.32475 -20.78858 -19.95675 -19.39264 -17.80492 -17.01244 -16.98689 -16.55228 -16.31305 -16.08648 -15.45186 -15.19449 -14.62237 -14.50460 -14.38938 -13.87641 -13.74350 -13.27929 -13.16689 -13.10990 -13.03051 -12.81584 -12.63713 -12.42658 -12.11033 -12.07128 -11.71478 -11.61057 -11.28771 -11.11020 -11.02854 -10.91631 -10.84900 -10.76789 -10.69626 -10.25694 -10.08979 -9.85351 -9.70812 -9.65320 -9.26478 -9.20459 -8.83706 -8.69395 -8.43751 -6.88359 -5.65911 -3.08408 1.66526 2.21091 2.62271 2.63765 2.95942 3.39821 3.43971 3.45534 4.20852 4.39704 4.41564 4.47431 4.56291 4.62490 4.75493 4.77517 4.87713 5.02357 5.12238 5.20787 5.22567 5.29403 5.34211 5.41953 5.43305 5.47988 5.51627 5.52627 5.58651 5.64905 5.76682 5.79325 5.93858 6.00699 6.05426 6.12589 6.22582 6.30910 6.38405 6.41111 6.43780 6.53271 6.66117 6.75321 6.75491 7.04184 7.41272 7.47649 7.54737 7.55610 7.80326 8.15060 8.28942 9.16000 9.77450 10.43727 11.37728 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002366 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.699526 B =11833.390125 C =12098.650178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.159 3.841 11 C -0.148 4.148 12 H 0.073 0.927 13 C -0.129 4.129 14 H 0.086 0.914 15 C 0.164 3.836 16 C 0.163 3.837 17 H 0.109 0.891 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.070 4.070 21 H 0.094 0.906 22 C 0.114 3.886 23 N -0.612 5.612 24 C 0.523 3.477 25 O -0.551 6.551 26 C -0.150 4.150 27 C 0.150 3.850 28 N -0.371 5.371 29 C 0.054 3.946 30 C -0.279 4.279 31 C 0.042 3.958 32 N -0.295 5.295 33 H 0.253 0.747 34 H 0.029 0.971 35 H 0.021 0.979 36 H 0.111 0.889 37 H 0.016 0.984 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.173 0.827 49 H 0.146 0.854 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -22.807 -4.310 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.034 3.966 11 C -0.167 4.167 12 H 0.091 0.909 13 C -0.149 4.149 14 H 0.104 0.896 15 C 0.040 3.960 16 C 0.061 3.939 17 H 0.126 0.874 18 C -0.171 4.171 19 C -0.147 4.147 20 C -0.090 4.090 21 H 0.112 0.888 22 C -0.008 4.008 23 N -0.346 5.346 24 C 0.311 3.689 25 O -0.430 6.430 26 C -0.190 4.190 27 C 0.029 3.971 28 N -0.153 5.153 29 C -0.092 4.092 30 C -0.308 4.308 31 C -0.144 4.144 32 N -0.116 5.116 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.128 0.872 37 H 0.034 0.966 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.190 0.810 49 H 0.164 0.836 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.861 -21.045 -4.143 22.236 hybrid contribution 0.162 -0.071 0.139 0.225 sum -5.699 -21.116 -4.004 22.235 Atomic orbital electron populations 1.69736 1.04861 1.24918 1.57670 1.24772 0.95733 0.97652 1.02645 0.86149 0.78382 0.83081 0.77852 1.21199 1.21586 1.21269 1.19041 0.90447 0.82372 1.42946 0.90504 1.45593 1.01256 0.99321 1.87338 1.20058 0.93065 0.85675 0.97825 1.21170 0.98670 0.93004 1.03824 0.90913 1.23772 0.92460 0.98691 0.99979 0.89550 1.21969 0.84741 0.92157 0.97152 1.22390 0.99921 0.84732 0.86814 0.87351 1.22060 0.99350 0.98330 0.97316 1.22259 0.96449 0.97587 0.98381 1.21284 0.97768 0.95860 0.94061 0.88814 1.22477 0.81461 0.98637 0.98232 1.49785 1.06062 1.32324 1.46448 1.20103 0.84111 0.84049 0.80684 1.90708 1.24960 1.64089 1.63263 1.21877 0.98832 0.97847 1.00490 1.21454 0.97235 0.86689 0.91764 1.48835 1.34582 1.11432 1.20478 1.22615 0.99348 0.86324 1.00913 1.21514 1.07359 1.02492 0.99467 1.23907 0.98706 0.91422 1.00390 1.77375 1.15289 1.21122 0.97861 0.93641 0.95281 0.96081 0.87158 0.96569 0.89829 0.92110 0.92245 0.91417 0.90817 0.90551 0.87562 0.88695 0.87795 0.88729 0.80999 0.83645 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.09 55.49 0.56 -26.14 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.04 10.32 -15.05 -0.16 -6.20 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -15.16 3.49 -170.42 -0.59 -15.76 16 10 C 0.16 3.15 7.15 -4.70 -0.03 3.11 16 11 C -0.15 -2.40 2.52 -93.20 -0.23 -2.63 16 12 H 0.07 1.26 3.76 -51.93 -0.20 1.07 16 13 C -0.13 -2.34 2.91 -87.55 -0.25 -2.59 16 14 H 0.09 1.66 7.25 -51.93 -0.38 1.29 16 15 C 0.16 3.84 5.36 -1.85 -0.01 3.83 16 16 C 0.16 2.56 3.90 -65.03 -0.25 2.31 16 17 H 0.11 1.89 7.73 -51.93 -0.40 1.49 16 18 C -0.13 -1.85 5.44 -26.57 -0.14 -1.99 16 19 C -0.11 -1.27 5.63 -25.21 -0.14 -1.41 16 20 C -0.07 -0.85 4.17 -89.91 -0.38 -1.23 16 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 22 C 0.11 1.30 5.35 -1.67 -0.01 1.29 16 23 N -0.61 -8.24 2.26 -159.22 -0.36 -8.60 16 24 C 0.52 7.02 7.80 -10.99 -0.09 6.94 16 25 O -0.55 -9.16 15.93 5.56 0.09 -9.07 16 26 C -0.15 -1.52 4.65 -27.88 -0.13 -1.65 16 27 C 0.15 1.47 5.80 -4.04 -0.02 1.44 16 28 N -0.37 -3.79 3.68 -61.36 -0.23 -4.02 16 29 C 0.05 0.45 11.45 -17.22 -0.20 0.25 16 30 C -0.28 -2.26 10.80 -40.01 -0.43 -2.69 16 31 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 32 N -0.29 -3.44 12.42 30.62 0.38 -3.06 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 2.98 5.80 -51.93 -0.30 2.68 16 37 H 0.02 0.40 7.33 -51.93 -0.38 0.02 16 38 H 0.08 1.29 5.66 -51.93 -0.29 0.99 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.90 7.37 -51.93 -0.38 0.51 16 43 H 0.08 0.67 6.94 -51.93 -0.36 0.31 16 44 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.09 0.83 7.64 -51.93 -0.40 0.43 16 46 H 0.10 0.87 8.03 -51.92 -0.42 0.46 16 47 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 48 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 49 H 0.15 0.84 8.06 -52.48 -0.42 0.41 16 50 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -32.74 382.02 -9.88 -42.62 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.68 Total: 2.77 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.79 Total: -1.48 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.24 Total: -57.58 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.74 -9.88 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089777842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.749 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds