Wall clock time and date at job start Wed Apr 1 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48498 * 109.47078 * 239.99215 * 3 2 1 5 5 H 1.48500 * 109.47225 * 359.97438 * 3 2 1 6 6 H 1.48512 * 109.47228 * 119.99664 * 3 2 1 7 7 C 1.38818 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00175 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99465 * 0.02562 * 7 2 1 10 10 C 1.49474 * 125.96292 * 179.97438 * 9 7 2 11 11 C 1.48252 * 103.95940 * 175.83778 * 10 9 7 12 12 H 1.08996 * 102.85193 * 289.33738 * 11 10 9 13 13 C 1.56775 * 103.72544 * 33.17757 * 11 10 9 14 14 H 1.08992 * 114.14350 * 70.88926 * 13 11 10 15 15 C 1.49358 * 125.96606 * 359.96103 * 9 7 2 16 16 C 1.53809 * 101.29145 * 192.74016 * 13 11 10 17 17 H 1.08998 * 113.25588 * 155.90610 * 16 13 11 18 18 C 1.53988 * 109.18387 * 27.79981 * 16 13 11 19 19 C 1.52307 * 109.95346 * 284.66801 * 18 16 13 20 20 C 1.48241 * 132.92551 * 166.45111 * 11 10 9 21 21 H 1.09002 * 112.97220 * 20.14675 * 20 11 10 22 22 C 1.55170 * 109.73163 * 253.10859 * 20 11 10 23 23 N 1.48719 * 105.58385 * 292.05820 * 22 20 11 24 24 C 1.34781 * 123.24289 * 212.45365 * 23 22 20 25 25 O 1.21281 * 119.99843 * 179.25005 * 24 23 22 26 26 C 1.50693 * 119.99704 * 359.25328 * 24 23 22 27 27 C 1.53005 * 109.46920 * 179.97438 * 26 24 23 28 28 N 1.46502 * 109.47090 * 180.02562 * 27 26 24 29 29 C 1.34946 * 126.03737 * 124.99612 * 28 27 26 30 30 C 1.35316 * 107.74345 * 179.97438 * 29 28 27 31 31 C 1.39866 * 107.92401 * 0.02562 * 30 29 28 32 32 N 1.30837 * 108.19940 * 359.74011 * 31 30 29 33 33 H 0.97004 * 120.00139 * 0.02562 * 1 2 3 34 34 H 1.09003 * 110.53060 * 57.22070 * 10 9 7 35 35 H 1.08997 * 110.53184 * 294.45972 * 10 9 7 36 36 H 1.08993 * 110.73718 * 34.82663 * 15 9 7 37 37 H 1.08992 * 110.89312 * 271.57192 * 15 9 7 38 38 H 1.08999 * 109.55074 * 44.15200 * 18 16 13 39 39 H 1.08997 * 109.55218 * 164.44957 * 18 16 13 40 40 H 1.09004 * 109.40436 * 277.83352 * 19 18 16 41 41 H 1.08997 * 111.22471 * 155.65258 * 19 18 16 42 42 H 1.08999 * 110.18654 * 50.47262 * 22 20 11 43 43 H 1.09004 * 110.18391 * 172.34720 * 22 20 11 44 44 H 1.08995 * 109.47481 * 299.99522 * 26 24 23 45 45 H 1.09000 * 109.47485 * 59.99807 * 26 24 23 46 46 H 1.09007 * 109.46808 * 299.99701 * 27 26 24 47 47 H 1.09000 * 109.47144 * 59.99666 * 27 26 24 48 48 H 1.08003 * 126.13035 * 0.02562 * 29 28 27 49 49 H 1.08003 * 126.03745 * 179.97438 * 30 29 28 50 50 H 1.08001 * 125.90297 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9343 -3.7532 0.0005 11 6 0.7694 -4.6643 0.1050 12 1 0.4290 -4.5062 1.1283 13 6 -0.3620 -3.9126 -0.6778 14 1 -0.2137 -3.8834 -1.7571 15 6 -0.1600 -2.5433 0.0008 16 6 -1.6035 -4.7195 -0.2612 17 1 -2.5314 -4.1530 -0.3403 18 6 -1.3637 -5.3347 1.1299 19 6 -0.4171 -6.5225 1.0168 20 6 0.6083 -6.1241 -0.0960 21 1 1.5499 -6.6692 -0.0294 22 6 -0.1526 -6.3896 -1.4221 23 7 -1.5353 -5.8908 -1.1961 24 6 -2.6234 -6.4467 -1.7649 25 8 -3.7261 -6.0002 -1.5286 26 6 -2.4700 -7.6229 -2.6942 27 6 -3.8477 -8.0583 -3.1976 28 7 -3.6986 -9.2022 -4.1006 29 6 -4.3153 -10.3963 -3.9779 30 6 -3.9135 -11.1758 -5.0083 31 6 -3.0202 -10.4330 -5.7872 32 7 -2.8947 -9.2480 -5.2469 33 1 -0.4850 0.8401 -0.0004 34 1 2.5948 -3.8773 0.8588 35 1 2.4760 -3.9302 -0.9286 36 1 -0.6309 -1.7511 -0.5811 37 1 -0.5493 -2.5560 1.0188 38 1 -0.9142 -4.5893 1.7859 39 1 -2.3128 -5.6676 1.5501 40 1 -0.9792 -7.4060 0.7140 41 1 0.0997 -6.7063 1.9587 42 1 0.3097 -5.8348 -2.2385 43 1 -0.1573 -7.4563 -1.6460 44 1 -1.8467 -7.3376 -3.5416 45 1 -2.0009 -8.4492 -2.1601 46 1 -4.4707 -8.3439 -2.3498 47 1 -4.3172 -7.2321 -3.7315 48 1 -5.0064 -10.6788 -3.1975 49 1 -4.2265 -12.1923 -5.1958 50 1 -2.5231 -10.7767 -6.6823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089777842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:37 Heat of formation + Delta-G solvation = 108.956122 kcal Electronic energy + Delta-G solvation = -30962.582285 eV Core-core repulsion = 26993.490337 eV Total energy + Delta-G solvation = -3969.091947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.94855 -41.98115 -40.11619 -37.52806 -35.28363 -34.60780 -33.56056 -32.60261 -31.32037 -30.79829 -30.35858 -28.75064 -27.32891 -25.87498 -24.96760 -23.47991 -22.72044 -21.94967 -21.57088 -21.50694 -20.53116 -18.92525 -18.62135 -18.23142 -17.51328 -17.48711 -17.23773 -16.71167 -16.48040 -15.95944 -15.56879 -15.31517 -15.15208 -14.74644 -14.67232 -14.34813 -14.20297 -14.02582 -13.94252 -13.75382 -13.53407 -13.29758 -13.20648 -13.11624 -12.86463 -12.66880 -12.46830 -12.39839 -12.36142 -12.31354 -12.17978 -12.00959 -11.79271 -11.52134 -11.43743 -11.03830 -10.79849 -10.69828 -10.49608 -10.36020 -9.58947 -9.47823 -8.91625 -7.77247 -5.22364 1.02659 1.44403 1.47654 1.48544 1.54118 1.58787 1.94668 2.02224 2.47147 3.25519 3.31301 3.39961 3.42555 3.54333 3.61580 3.83679 3.86761 4.02156 4.04774 4.12227 4.17192 4.20152 4.26682 4.29987 4.43204 4.49280 4.55246 4.55980 4.64648 4.69928 4.73312 4.80137 4.87823 4.89704 4.93749 4.96196 5.02944 5.15730 5.19436 5.21489 5.22190 5.33109 5.35732 5.47242 5.58948 5.65295 5.76413 5.80636 6.15570 6.24973 6.49341 6.82851 7.04675 7.08914 7.72042 8.39499 9.23895 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002366 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.699526 B =11833.390125 C =12098.650178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.073 4.073 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.232 4.232 8 H 0.083 0.917 9 N -0.633 5.633 10 C 0.155 3.845 11 C -0.125 4.125 12 H 0.062 0.938 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.170 3.830 16 C 0.163 3.837 17 H 0.080 0.920 18 C -0.128 4.128 19 C -0.099 4.099 20 C -0.062 4.062 21 H 0.129 0.871 22 C 0.113 3.887 23 N -0.612 5.612 24 C 0.522 3.478 25 O -0.589 6.589 26 C -0.132 4.132 27 C 0.153 3.847 28 N -0.382 5.382 29 C 0.053 3.947 30 C -0.284 4.284 31 C 0.036 3.964 32 N -0.340 5.340 33 H 0.245 0.755 34 H 0.037 0.963 35 H 0.028 0.972 36 H 0.067 0.933 37 H -0.005 1.005 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.074 0.926 48 H 0.203 0.797 49 H 0.169 0.831 50 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 -26.656 -4.383 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.361 4.361 8 H 0.101 0.899 9 N -0.361 5.361 10 C 0.031 3.969 11 C -0.143 4.143 12 H 0.080 0.920 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.045 3.955 16 C 0.061 3.939 17 H 0.099 0.901 18 C -0.166 4.166 19 C -0.137 4.137 20 C -0.081 4.081 21 H 0.147 0.853 22 C -0.008 4.008 23 N -0.345 5.345 24 C 0.311 3.689 25 O -0.470 6.470 26 C -0.173 4.173 27 C 0.031 3.969 28 N -0.164 5.164 29 C -0.093 4.093 30 C -0.314 4.314 31 C -0.149 4.149 32 N -0.162 5.162 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.013 0.987 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.092 0.908 48 H 0.220 0.780 49 H 0.186 0.814 50 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.726 -24.946 -4.230 25.740 hybrid contribution -0.206 1.130 0.123 1.156 sum -4.932 -23.816 -4.107 24.666 Atomic orbital electron populations 1.70037 1.06261 1.24918 1.58977 1.25637 0.96605 1.01009 1.03205 0.85124 0.77057 0.78777 0.78219 1.20303 1.22259 1.20308 1.19446 0.91035 0.83719 1.41946 0.89923 1.45954 1.02063 1.00813 1.87240 1.20222 0.94374 0.84069 0.98233 1.21129 0.95409 0.95314 1.02471 0.92009 1.23427 0.95305 0.96308 0.98798 0.90858 1.21622 0.84181 0.94035 0.95678 1.22087 0.97336 0.85513 0.89014 0.90145 1.22012 1.00399 0.98932 0.95276 1.22237 0.95696 0.96671 0.99064 1.21369 0.99596 0.92464 0.94685 0.85294 1.22696 0.79634 1.00880 0.97569 1.49774 1.07398 1.31350 1.45934 1.20680 0.83303 0.84490 0.80418 1.90696 1.26502 1.65351 1.64461 1.21754 0.99262 0.96757 0.99498 1.21367 0.97111 0.86439 0.91959 1.48848 1.35164 1.11995 1.20409 1.23225 0.99064 0.85424 1.01584 1.21877 1.06894 1.03487 0.99101 1.24424 0.98610 0.90947 1.00932 1.77328 1.17071 1.22625 0.99143 0.94526 0.94528 0.95412 0.91480 0.98714 0.91868 0.91602 0.90218 0.89766 0.91574 0.86419 0.87808 0.86117 0.86306 0.90770 0.77978 0.81391 0.78026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.08 10.09 21.65 0.22 -57.87 16 2 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 3 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.23 -13.11 10.32 84.03 0.87 -12.24 16 8 H 0.08 4.43 7.83 -2.92 -0.02 4.41 16 9 N -0.63 -32.63 3.49 -693.08 -2.42 -35.05 16 10 C 0.15 6.06 7.15 84.31 0.60 6.66 16 11 C -0.12 -3.90 2.52 -12.47 -0.03 -3.93 16 12 H 0.06 2.11 3.76 -2.39 -0.01 2.10 16 13 C -0.12 -4.43 2.91 -8.81 -0.03 -4.45 16 14 H 0.07 2.92 7.25 -2.39 -0.02 2.91 16 15 C 0.17 8.45 5.36 86.22 0.46 8.91 16 16 C 0.16 5.26 3.90 44.91 0.18 5.43 16 17 H 0.08 3.02 7.73 -2.39 -0.02 3.00 16 18 C -0.13 -3.48 5.44 30.70 0.17 -3.31 16 19 C -0.10 -1.94 5.63 31.58 0.18 -1.76 16 20 C -0.06 -1.27 4.17 -10.33 -0.04 -1.31 16 21 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 22 C 0.11 2.19 5.35 86.69 0.46 2.65 16 23 N -0.61 -15.58 2.26 -776.05 -1.76 -17.34 16 24 C 0.52 13.36 7.80 87.65 0.68 14.04 16 25 O -0.59 -19.64 15.93 -3.03 -0.05 -19.69 16 26 C -0.13 -2.36 4.65 29.85 0.14 -2.23 16 27 C 0.15 2.76 5.80 86.38 0.50 3.27 16 28 N -0.38 -7.05 3.68 -348.04 -1.28 -8.33 16 29 C 0.05 0.72 11.45 83.54 0.96 1.67 16 30 C -0.28 -3.81 10.80 21.99 0.24 -3.57 16 31 C 0.04 0.60 12.03 85.24 1.02 1.62 16 32 N -0.34 -7.43 12.42 -57.03 -0.71 -8.14 16 33 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 3.93 5.80 -2.39 -0.01 3.91 16 37 H -0.01 -0.27 7.33 -2.39 -0.02 -0.28 16 38 H 0.06 1.98 5.66 -2.39 -0.01 1.96 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 1.32 7.71 -2.38 -0.02 1.30 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.43 7.37 -2.39 -0.02 1.42 16 43 H 0.12 1.41 6.94 -2.38 -0.02 1.39 16 44 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.12 1.57 7.64 -2.39 -0.02 1.55 16 46 H 0.12 1.76 8.03 -2.38 -0.02 1.74 16 47 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 48 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 49 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 50 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -76.43 382.02 3.80 -72.63 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.94 Total: 17.62 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.82 Total: 7.75 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -5.95 Total: -126.73 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -76.43 3.80 -72.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089777842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.589 kcal (2) G-P(sol) polarization free energy of solvation -76.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds