Wall clock time and date at job start Wed Apr 1 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00019 * 2 1 4 4 H 1.48501 * 109.47342 * 240.00083 * 3 2 1 5 5 H 1.48500 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46996 * 120.00121 * 3 2 1 7 7 C 1.38812 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99857 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00075 * 0.02562 * 7 2 1 10 10 C 1.49854 * 125.81668 * 179.97438 * 9 7 2 11 11 C 1.48406 * 102.14724 * 202.37303 * 10 9 7 12 12 H 1.09000 * 103.84066 * 62.09837 * 11 10 9 13 13 C 1.55967 * 102.74244 * 317.65896 * 11 10 9 14 14 H 1.09003 * 112.12718 * 288.86180 * 13 11 10 15 15 C 1.48938 * 125.81353 * 0.02562 * 9 7 2 16 16 C 1.52298 * 103.00617 * 169.48860 * 13 11 10 17 17 H 1.08998 * 113.13949 * 206.72078 * 16 13 11 18 18 C 1.55522 * 103.64264 * 83.49225 * 16 13 11 19 19 C 1.54052 * 107.23154 * 319.42904 * 18 16 13 20 20 C 1.51042 * 133.74321 * 184.76603 * 11 10 9 21 21 H 1.09005 * 113.26096 * 337.93332 * 20 11 10 22 22 C 1.56696 * 103.97354 * 213.56643 * 20 11 10 23 23 N 1.48560 * 109.39356 * 333.85250 * 16 13 11 24 24 C 1.34776 * 122.41020 * 253.46196 * 23 16 13 25 25 O 1.21284 * 119.99644 * 359.97438 * 24 23 16 26 26 C 1.50696 * 120.00343 * 179.97438 * 24 23 16 27 27 C 1.53004 * 109.47023 * 180.02562 * 26 24 23 28 28 N 1.46499 * 109.46877 * 180.02562 * 27 26 24 29 29 C 1.34949 * 126.03870 * 124.71440 * 28 27 26 30 30 C 1.35317 * 107.74714 * 179.84107 * 29 28 27 31 31 C 1.39874 * 107.91859 * 0.42072 * 30 29 28 32 32 N 1.30836 * 108.20500 * 359.74179 * 31 30 29 33 33 H 0.97004 * 120.00189 * 359.97438 * 1 2 3 34 34 H 1.09001 * 110.87048 * 320.53905 * 10 9 7 35 35 H 1.09005 * 110.86523 * 84.20737 * 10 9 7 36 36 H 1.08998 * 110.22218 * 67.91810 * 15 9 7 37 37 H 1.09006 * 110.22299 * 305.98287 * 15 9 7 38 38 H 1.09002 * 109.90691 * 199.99906 * 18 16 13 39 39 H 1.08997 * 109.96846 * 78.89923 * 18 16 13 40 40 H 1.09002 * 109.52784 * 87.86758 * 19 18 16 41 41 H 1.08998 * 109.52987 * 208.00742 * 19 18 16 42 42 H 1.09004 * 110.56544 * 82.12108 * 22 20 11 43 43 H 1.09000 * 110.57028 * 204.82453 * 22 20 11 44 44 H 1.09005 * 109.47091 * 299.99672 * 26 24 23 45 45 H 1.08994 * 109.47268 * 59.99550 * 26 24 23 46 46 H 1.08996 * 109.47012 * 299.99630 * 27 26 24 47 47 H 1.08996 * 109.47359 * 60.00201 * 27 26 24 48 48 H 1.08000 * 126.12525 * 359.97438 * 29 28 27 49 49 H 1.07997 * 126.04137 * 180.16356 * 30 29 28 50 50 H 1.08004 * 125.89832 * 179.72140 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 1.9395 -3.7550 -0.0028 11 6 0.8435 -4.5891 -0.5558 12 1 0.6895 -4.1867 -1.5571 13 6 -0.4162 -4.0298 0.1741 14 1 -0.4335 -4.3014 1.2296 15 6 -0.1562 -2.5389 -0.0028 16 6 -1.5671 -4.6864 -0.5767 17 1 -2.4882 -4.1046 -0.5423 18 6 -1.6937 -6.0834 0.0949 19 6 -0.2644 -6.6020 0.3423 20 6 0.6694 -6.0733 -0.7748 21 1 1.6143 -6.6139 -0.8315 22 6 -0.1982 -6.1645 -2.0764 23 7 -1.1325 -5.0107 -1.9598 24 6 -1.5537 -4.3112 -3.0321 25 8 -2.3159 -3.3791 -2.8868 26 6 -1.0776 -4.6872 -4.4116 27 6 -1.6997 -3.7417 -5.4411 28 7 -1.2374 -4.1077 -6.7822 29 6 -2.0222 -4.4000 -7.8403 30 6 -1.2138 -4.6809 -8.8884 31 6 0.1106 -4.5654 -8.4534 32 7 0.0977 -4.2219 -7.1910 33 1 -0.4850 0.8401 0.0004 34 1 2.8159 -3.7866 -0.6502 35 1 2.1923 -4.0680 1.0103 36 1 -0.5692 -2.1942 -0.9507 37 1 -0.5926 -1.9796 0.8248 38 1 -2.2269 -6.7662 -0.5665 39 1 -2.2253 -5.9941 1.0423 40 1 0.0892 -6.2480 1.3107 41 1 -0.2652 -7.6920 0.3309 42 1 0.4287 -6.0633 -2.9624 43 1 -0.7494 -7.1045 -2.1042 44 1 0.0086 -4.6075 -4.4553 45 1 -1.3759 -5.7121 -4.6320 46 1 -2.7859 -3.8210 -5.3975 47 1 -1.4010 -2.7170 -5.2205 48 1 -3.1022 -4.4062 -7.8496 49 1 -1.5344 -4.9510 -9.8837 50 1 0.9917 -4.7315 -9.0556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089777844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:43 Heat of formation + Delta-G solvation = 96.877304 kcal Electronic energy + Delta-G solvation = -31687.335814 eV Core-core repulsion = 27717.720090 eV Total energy + Delta-G solvation = -3969.615724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.77777 -42.01589 -39.94079 -37.63294 -35.34439 -34.46024 -33.64334 -32.73660 -31.36609 -30.76817 -30.39033 -28.55720 -27.06972 -26.21867 -25.17874 -23.48367 -22.17718 -21.99482 -21.71324 -21.54051 -20.73334 -18.96310 -18.66070 -18.39424 -17.56267 -17.37228 -17.24112 -16.57346 -16.40457 -15.97345 -15.55255 -15.24945 -15.08675 -14.94969 -14.78009 -14.32893 -14.12625 -14.04642 -13.99294 -13.73088 -13.54362 -13.35325 -13.30753 -12.98945 -12.93999 -12.68913 -12.64613 -12.45634 -12.36179 -12.14062 -12.01660 -11.91347 -11.84628 -11.54266 -11.35264 -11.13255 -10.83179 -10.71234 -10.61495 -10.42062 -9.55204 -9.51883 -8.96835 -7.87334 -5.24681 0.99632 1.37161 1.42164 1.43892 1.48360 1.58751 1.98577 2.00777 2.43001 3.26202 3.33701 3.37619 3.48757 3.51533 3.60089 3.75345 3.82813 3.98746 4.07204 4.13632 4.19282 4.23742 4.24567 4.33345 4.40331 4.50362 4.52990 4.62851 4.65130 4.68294 4.78601 4.83205 4.86727 4.89773 4.91404 4.95638 5.07511 5.08827 5.17894 5.25333 5.32789 5.37569 5.43832 5.54701 5.60698 5.69203 5.74424 5.77182 6.10232 6.11303 6.45165 6.79984 7.00461 7.12686 7.68535 8.36828 9.21690 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.003957 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.501608 B = 7075.075696 C = 9140.169580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.243 4.243 8 H 0.083 0.917 9 N -0.635 5.635 10 C 0.155 3.845 11 C -0.108 4.108 12 H 0.029 0.971 13 C -0.124 4.124 14 H 0.089 0.911 15 C 0.206 3.794 16 C 0.154 3.846 17 H 0.075 0.925 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.062 4.062 21 H 0.129 0.871 22 C 0.108 3.892 23 N -0.606 5.606 24 C 0.512 3.488 25 O -0.588 6.588 26 C -0.128 4.128 27 C 0.154 3.846 28 N -0.382 5.382 29 C 0.052 3.948 30 C -0.281 4.281 31 C 0.038 3.962 32 N -0.345 5.345 33 H 0.243 0.757 34 H 0.043 0.957 35 H 0.033 0.967 36 H -0.018 1.018 37 H 0.010 0.990 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.121 0.879 47 H 0.058 0.942 48 H 0.205 0.795 49 H 0.173 0.827 50 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -22.547 -11.006 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.264 4.264 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.372 4.372 8 H 0.101 0.899 9 N -0.363 5.363 10 C 0.032 3.968 11 C -0.128 4.128 12 H 0.048 0.952 13 C -0.144 4.144 14 H 0.107 0.893 15 C 0.082 3.918 16 C 0.050 3.950 17 H 0.093 0.907 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.081 4.081 21 H 0.147 0.853 22 C -0.012 4.012 23 N -0.339 5.339 24 C 0.300 3.700 25 O -0.469 6.469 26 C -0.169 4.169 27 C 0.032 3.968 28 N -0.165 5.165 29 C -0.093 4.093 30 C -0.310 4.310 31 C -0.148 4.148 32 N -0.167 5.167 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.000 1.000 37 H 0.028 0.972 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.145 0.855 46 H 0.139 0.861 47 H 0.077 0.923 48 H 0.221 0.779 49 H 0.191 0.809 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.073 -21.506 -9.804 23.983 hybrid contribution -0.176 2.100 -0.581 2.186 sum -4.249 -19.406 -10.385 22.417 Atomic orbital electron populations 1.70246 1.06491 1.24998 1.58363 1.25710 0.96550 1.01213 1.02913 0.85149 0.77112 0.78710 0.78379 1.20490 1.22180 1.19595 1.19465 0.90998 0.83908 1.42846 0.89879 1.45952 1.01905 1.00961 1.87505 1.20363 0.94578 0.84069 0.97838 1.21344 0.94511 0.96921 0.99982 0.95212 1.22757 0.96935 0.94986 0.99709 0.89301 1.20467 0.83435 0.91817 0.96115 1.21718 0.95502 0.97605 0.80149 0.90662 1.22636 0.98528 0.93010 1.01202 1.22199 0.92788 1.01776 0.98030 1.21988 0.99702 0.91390 0.94996 0.85340 1.23373 0.90660 0.88521 0.98688 1.49336 1.46783 1.32148 1.05638 1.20792 0.80409 0.81434 0.87316 1.90731 1.38572 1.30498 1.87095 1.21709 1.02952 1.02414 0.89802 1.21290 1.00444 0.98046 0.77001 1.48817 1.04202 1.53575 1.09906 1.23266 0.99770 0.99272 0.87030 1.21887 0.91829 1.15647 1.01669 1.24468 1.00012 0.98191 0.92105 1.77371 0.98123 1.25182 1.15977 0.94805 0.93885 0.94956 0.99995 0.97176 0.89213 0.89826 0.92003 0.87934 0.89454 0.86555 0.88647 0.85515 0.86090 0.92332 0.77858 0.80939 0.77784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.99 10.37 21.65 0.22 -62.77 16 2 C -0.07 -4.40 5.49 84.86 0.47 -3.94 16 3 Si 0.98 49.33 29.55 68.60 2.03 51.36 16 4 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.24 -14.72 10.32 84.03 0.87 -13.85 16 8 H 0.08 4.75 7.83 -2.91 -0.02 4.73 16 9 N -0.64 -35.34 3.48 -696.28 -2.42 -37.76 16 10 C 0.15 6.51 7.15 84.27 0.60 7.12 16 11 C -0.11 -3.64 2.59 -11.85 -0.03 -3.67 16 12 H 0.03 1.20 5.41 -2.39 -0.01 1.19 16 13 C -0.12 -4.76 2.52 -10.21 -0.03 -4.79 16 14 H 0.09 3.22 6.86 -2.39 -0.02 3.20 16 15 C 0.21 11.30 4.91 85.70 0.42 11.72 16 16 C 0.15 4.86 3.86 45.23 0.17 5.04 16 17 H 0.08 2.84 7.64 -2.39 -0.02 2.82 16 18 C -0.12 -2.26 5.42 31.82 0.17 -2.09 16 19 C -0.11 -1.82 5.30 31.60 0.17 -1.65 16 20 C -0.06 -1.23 4.32 -9.49 -0.04 -1.27 16 21 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 22 C 0.11 1.98 5.42 87.20 0.47 2.45 16 23 N -0.61 -17.30 1.76 -775.92 -1.36 -18.67 16 24 C 0.51 17.01 7.65 87.66 0.67 17.69 16 25 O -0.59 -25.63 15.82 -3.04 -0.05 -25.68 16 26 C -0.13 -3.24 4.56 29.85 0.14 -3.10 16 27 C 0.15 4.08 5.80 86.38 0.50 4.58 16 28 N -0.38 -9.51 3.68 -348.06 -1.28 -10.79 16 29 C 0.05 0.95 11.45 83.54 0.96 1.91 16 30 C -0.28 -4.85 10.80 21.99 0.24 -4.61 16 31 C 0.04 0.79 12.03 85.24 1.03 1.82 16 32 N -0.34 -9.63 12.42 -57.02 -0.71 -10.34 16 33 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 36 H -0.02 -1.18 7.84 -2.39 -0.02 -1.20 16 37 H 0.01 0.62 7.08 -2.38 -0.02 0.60 16 38 H 0.09 1.38 7.50 -2.39 -0.02 1.36 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.18 7.21 -2.39 -0.02 1.16 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 1.51 6.79 -2.39 -0.02 1.49 16 43 H 0.12 1.27 7.38 -2.39 -0.02 1.25 16 44 H 0.10 2.65 7.61 -2.38 -0.02 2.63 16 45 H 0.13 2.29 8.14 -2.39 -0.02 2.28 16 46 H 0.12 2.69 8.03 -2.39 -0.02 2.67 16 47 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 48 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 49 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 50 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -89.39 384.59 4.13 -85.26 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.93 Total: 16.04 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.77 Total: 13.34 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -5.55 Total: -140.33 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -89.39 4.13 -85.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089777844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.139 kcal (2) G-P(sol) polarization free energy of solvation -89.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds