Wall clock time and date at job start Wed Apr 1 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99758 * 2 1 4 4 H 1.48500 * 109.46857 * 240.00209 * 3 2 1 5 5 H 1.48502 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47290 * 119.99948 * 3 2 1 7 7 C 1.38808 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99992 * 189.07414 * 7 2 1 9 9 N 1.36939 * 119.99946 * 9.07566 * 7 2 1 10 10 C 1.49156 * 127.45273 * 15.88390 * 9 7 2 11 11 C 1.54366 * 104.06937 * 140.66765 * 10 9 7 12 12 H 1.09001 * 110.93733 * 263.27538 * 11 10 9 13 13 C 1.54166 * 105.54012 * 23.49805 * 11 10 9 14 14 H 1.09002 * 110.86856 * 240.07097 * 13 11 10 15 15 C 1.48137 * 127.83686 * 195.46825 * 9 7 2 16 16 C 1.53026 * 109.71593 * 116.75076 * 13 11 10 17 17 H 1.09008 * 109.63326 * 180.51258 * 16 13 11 18 18 C 1.53036 * 109.21349 * 300.65282 * 16 13 11 19 19 C 1.54270 * 110.17998 * 58.98246 * 18 16 13 20 20 C 1.53232 * 109.00536 * 140.91795 * 11 10 9 21 21 H 1.08999 * 110.49434 * 68.02221 * 20 11 10 22 22 N 1.47692 * 108.05528 * 189.02288 * 20 11 10 23 23 C 1.34778 * 122.07839 * 238.73407 * 22 20 11 24 24 O 1.21277 * 119.99302 * 359.97438 * 23 22 20 25 25 C 1.50697 * 120.00377 * 180.02562 * 23 22 20 26 26 C 1.52996 * 109.47169 * 179.97438 * 25 23 22 27 27 C 1.50702 * 109.47075 * 179.97438 * 26 25 23 28 28 C 1.34661 * 126.59357 * 274.68623 * 27 26 25 29 29 N 1.34129 * 108.02053 * 179.87433 * 28 27 26 30 30 C 1.30494 * 109.25800 * 0.40086 * 29 28 27 31 31 N 1.35046 * 108.69847 * 359.74951 * 30 29 28 32 32 H 0.96999 * 126.39875 * 179.97438 * 31 30 29 33 33 C 1.47648 * 115.85362 * 58.99792 * 22 20 11 34 34 H 0.97003 * 120.00294 * 0.02562 * 1 2 3 35 35 H 1.09002 * 111.00152 * 21.88718 * 10 9 7 36 36 H 1.08994 * 110.29661 * 259.10993 * 10 9 7 37 37 H 1.09003 * 110.40191 * 100.65131 * 15 9 7 38 38 H 1.08998 * 110.49883 * 338.29527 * 15 9 7 39 39 H 1.09007 * 109.37776 * 179.46047 * 18 16 13 40 40 H 1.09000 * 109.38089 * 299.12373 * 18 16 13 41 41 H 1.09005 * 110.30917 * 241.14398 * 19 18 16 42 42 H 1.09001 * 109.29554 * 120.78955 * 19 18 16 43 43 H 1.09004 * 109.47125 * 59.99524 * 25 23 22 44 44 H 1.09009 * 109.46799 * 299.99673 * 25 23 22 45 45 H 1.08999 * 109.47209 * 300.00070 * 26 25 23 46 46 H 1.09000 * 109.46963 * 59.99716 * 26 25 23 47 47 H 1.08002 * 125.98958 * 0.02562 * 28 27 26 48 48 H 1.07994 * 125.65110 * 179.73748 * 30 29 28 49 49 H 1.09000 * 109.99265 * 119.25984 * 33 22 20 50 50 H 1.09000 * 109.99577 * 240.64297 * 33 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2078 0.1481 9 7 1.3385 -2.3807 -0.1860 10 6 -0.0424 -2.5630 -0.7197 11 6 0.0641 -3.8152 -1.6161 12 1 0.2036 -3.5359 -2.6604 13 6 1.2823 -4.5988 -1.0882 14 1 2.0387 -4.7101 -1.8650 15 6 1.8205 -3.7545 0.0875 16 6 0.8291 -5.9597 -0.5549 17 1 1.6901 -6.5088 -0.1737 18 6 -0.1849 -5.7470 0.5713 19 6 -1.3996 -4.9513 0.0505 20 6 -1.2007 -4.6625 -1.4420 21 1 -2.0661 -4.1464 -1.8576 22 7 -0.9868 -5.9512 -2.1312 23 6 -1.7925 -6.3732 -3.1259 24 8 -2.7282 -5.6879 -3.4803 25 6 -1.5313 -7.6971 -3.7967 26 6 -2.5833 -7.9354 -4.8817 27 6 -2.3218 -9.2590 -5.5530 28 6 -1.4800 -9.4862 -6.5792 29 7 -1.5348 -10.7923 -6.8796 30 6 -2.3850 -11.3815 -6.0841 31 7 -2.8987 -10.4604 -5.2406 32 1 -3.5544 -10.6201 -4.5439 33 6 0.1607 -6.7512 -1.6590 34 1 -0.4851 0.8400 -0.0004 35 1 -0.3509 -1.6991 -1.3083 36 1 -0.7431 -2.7381 0.0966 37 1 1.4164 -4.1178 1.0325 38 1 2.9100 -3.7801 0.1063 39 1 -0.5168 -6.7151 0.9467 40 1 0.2854 -5.1889 1.3809 41 1 -1.4962 -4.0105 0.5925 42 1 -2.3042 -5.5436 0.1884 43 1 -1.5852 -8.4961 -3.0572 44 1 -0.5392 -7.6862 -4.2482 45 1 -3.5752 -7.9464 -4.4300 46 1 -2.5298 -7.1364 -5.6213 47 1 -0.8662 -8.7469 -7.0723 48 1 -2.6363 -12.4317 -6.0980 49 1 -0.1858 -7.7133 -1.2816 50 1 0.8698 -6.9024 -2.4729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089821698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:09 Heat of formation + Delta-G solvation = 54.581547 kcal Electronic energy + Delta-G solvation = -30939.269451 eV Core-core repulsion = 26967.819645 eV Total energy + Delta-G solvation = -3971.449806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.31525 -41.14836 -38.82736 -35.63545 -34.18552 -33.04524 -32.59845 -32.00772 -31.60152 -29.37583 -28.92876 -27.12110 -25.76403 -24.59346 -23.82361 -22.04746 -21.78514 -21.16334 -20.96104 -20.41782 -19.43723 -18.25103 -17.22575 -16.96591 -16.35433 -16.21925 -15.83460 -15.44741 -15.07585 -14.91258 -14.62003 -14.34701 -13.82236 -13.65137 -13.52657 -13.30738 -13.19401 -13.03136 -12.79876 -12.62838 -12.29258 -12.27769 -11.78283 -11.74182 -11.62370 -11.42600 -11.22718 -11.07473 -10.82806 -10.55465 -10.31398 -10.24652 -10.15921 -10.14148 -9.93783 -9.79143 -9.73818 -9.60421 -9.32121 -8.64971 -8.64040 -8.33052 -6.81886 -5.77912 -3.11521 1.72303 2.69762 2.79142 2.87846 3.09160 3.38947 3.44033 3.44845 4.27284 4.46205 4.47437 4.67595 4.74144 4.79409 4.83672 4.84998 5.02291 5.13658 5.20503 5.25260 5.27237 5.31960 5.39921 5.46648 5.48267 5.54815 5.65324 5.68689 5.79026 5.80771 5.83797 5.92951 5.95553 6.02591 6.09641 6.18600 6.26714 6.41074 6.45680 6.47244 6.52659 6.61225 6.69239 6.83170 7.02219 7.05229 7.39238 7.56719 7.59804 7.73630 7.77081 8.21223 8.25639 9.11369 9.75666 10.52776 11.36111 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.002324 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.600019 B =12042.754382 C =12307.540036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.227 4.227 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.163 3.837 11 C -0.115 4.115 12 H 0.067 0.933 13 C -0.091 4.091 14 H 0.068 0.932 15 C 0.128 3.872 16 C -0.091 4.091 17 H 0.083 0.917 18 C -0.115 4.115 19 C -0.131 4.131 20 C 0.151 3.849 21 H 0.099 0.901 22 N -0.605 5.605 23 C 0.515 3.485 24 O -0.548 6.548 25 C -0.131 4.131 26 C -0.029 4.029 27 C -0.018 4.018 28 C -0.024 4.024 29 N -0.495 5.495 30 C 0.179 3.821 31 N -0.568 5.568 32 H 0.419 0.581 33 C 0.119 3.881 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.170 0.830 48 H 0.207 0.793 49 H 0.065 0.935 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -22.247 -4.938 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.355 4.355 8 H 0.091 0.909 9 N -0.321 5.321 10 C 0.037 3.963 11 C -0.136 4.136 12 H 0.085 0.915 13 C -0.111 4.111 14 H 0.087 0.913 15 C 0.002 3.998 16 C -0.110 4.110 17 H 0.101 0.899 18 C -0.152 4.152 19 C -0.169 4.169 20 C 0.049 3.951 21 H 0.117 0.883 22 N -0.338 5.338 23 C 0.303 3.697 24 O -0.426 6.426 25 C -0.172 4.172 26 C -0.068 4.068 27 C -0.134 4.134 28 C -0.172 4.172 29 N -0.213 5.213 30 C -0.105 4.105 31 N -0.171 5.171 32 H 0.256 0.744 33 C -0.003 4.003 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.187 0.813 48 H 0.223 0.777 49 H 0.083 0.917 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.747 -21.987 -5.760 23.219 hybrid contribution -0.204 0.961 0.984 1.390 sum -4.951 -21.026 -4.776 22.123 Atomic orbital electron populations 1.69877 1.05002 1.25454 1.55797 1.24865 0.95609 0.97859 1.01920 0.86236 0.78578 0.83200 0.77948 1.21160 1.21585 1.21076 1.18930 0.90663 0.82546 1.43344 0.90870 1.45119 1.13611 0.99880 1.73445 1.21910 0.87138 0.93179 0.94080 1.22667 0.92648 0.97496 1.00805 0.91466 1.22116 0.97161 0.93031 0.98816 0.91321 1.21868 0.96831 0.86678 0.94440 1.21009 0.98020 0.96830 0.95156 0.89851 1.21830 0.95745 0.99554 0.98084 1.22265 0.97378 1.01610 0.95629 1.21424 0.99291 0.82719 0.91656 0.88255 1.48731 1.28910 1.21099 1.35067 1.20426 0.82001 0.87692 0.79554 1.90700 1.30437 1.57560 1.63882 1.21649 1.01479 0.95540 0.98503 1.19772 0.99049 0.90744 0.97223 1.21356 1.01779 0.88183 1.02049 1.22158 1.02743 0.93577 0.98674 1.70287 1.18818 1.06884 1.25355 1.24965 0.97142 0.96860 0.91535 1.43333 1.35479 1.08291 1.30037 0.74353 1.21503 0.87684 0.93867 0.97293 0.93565 0.89914 0.94782 0.95080 0.94028 0.92727 0.90471 0.88946 0.92653 0.89435 0.88494 0.90389 0.88484 0.81314 0.77695 0.91684 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.86 55.49 0.60 -25.86 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.19 10.35 -15.06 -0.16 -6.34 16 8 H 0.07 1.94 7.84 -52.49 -0.41 1.53 16 9 N -0.60 -14.70 3.40 -168.02 -0.57 -15.27 16 10 C 0.16 3.73 5.22 -1.85 -0.01 3.72 16 11 C -0.12 -2.11 3.30 -89.17 -0.29 -2.41 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.09 -1.47 3.16 -89.25 -0.28 -1.75 16 14 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.13 2.49 6.55 -2.39 -0.02 2.47 16 16 C -0.09 -1.12 2.79 -91.39 -0.26 -1.38 16 17 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 18 C -0.11 -1.48 5.30 -26.05 -0.14 -1.62 16 19 C -0.13 -1.93 5.62 -25.90 -0.15 -2.08 16 20 C 0.15 2.43 3.11 -66.99 -0.21 2.22 16 21 H 0.10 1.79 7.20 -51.93 -0.37 1.42 16 22 N -0.60 -8.09 2.81 -164.91 -0.46 -8.55 16 23 C 0.52 6.86 7.75 -10.99 -0.09 6.78 16 24 O -0.55 -9.33 15.57 5.56 0.09 -9.24 16 25 C -0.13 -1.19 4.62 -27.89 -0.13 -1.32 16 26 C -0.03 -0.26 5.06 -27.88 -0.14 -0.40 16 27 C -0.02 -0.16 6.49 -81.60 -0.53 -0.69 16 28 C -0.02 -0.24 11.79 -17.81 -0.21 -0.45 16 29 N -0.49 -5.45 11.25 -14.67 -0.17 -5.61 16 30 C 0.18 1.34 13.04 -90.38 -1.18 0.16 16 31 N -0.57 -3.72 6.15 -10.30 -0.06 -3.79 16 32 H 0.42 1.48 8.96 -40.82 -0.37 1.12 16 33 C 0.12 1.27 5.16 -4.22 -0.02 1.25 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.08 2.20 6.57 -51.93 -0.34 1.86 16 36 H 0.03 0.80 5.21 -51.93 -0.27 0.53 16 37 H 0.03 0.59 5.31 -51.93 -0.28 0.32 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.10 5.79 -51.93 -0.30 0.80 16 41 H 0.09 1.56 5.67 -51.93 -0.29 1.26 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 44 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 45 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 47 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 50 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -33.97 380.18 -11.44 -45.42 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.68 Total: 2.43 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.89 Total: -2.07 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.66 Total: -59.08 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.97 -11.44 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089821698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.997 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds