Wall clock time and date at job start Wed Apr 1 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99758 * 2 1 4 4 H 1.48500 * 109.46857 * 240.00209 * 3 2 1 5 5 H 1.48502 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47290 * 119.99948 * 3 2 1 7 7 C 1.38808 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99992 * 189.07414 * 7 2 1 9 9 N 1.36939 * 119.99946 * 9.07566 * 7 2 1 10 10 C 1.49156 * 127.45273 * 15.88390 * 9 7 2 11 11 C 1.54366 * 104.06937 * 140.66765 * 10 9 7 12 12 H 1.09001 * 110.93733 * 263.27538 * 11 10 9 13 13 C 1.54166 * 105.54012 * 23.49805 * 11 10 9 14 14 H 1.09002 * 110.86856 * 240.07097 * 13 11 10 15 15 C 1.48137 * 127.83686 * 195.46825 * 9 7 2 16 16 C 1.53026 * 109.71593 * 116.75076 * 13 11 10 17 17 H 1.09008 * 109.63326 * 180.51258 * 16 13 11 18 18 C 1.53036 * 109.21349 * 300.65282 * 16 13 11 19 19 C 1.54270 * 110.17998 * 58.98246 * 18 16 13 20 20 C 1.53232 * 109.00536 * 140.91795 * 11 10 9 21 21 H 1.08999 * 110.49434 * 68.02221 * 20 11 10 22 22 N 1.47692 * 108.05528 * 189.02288 * 20 11 10 23 23 C 1.34778 * 122.07839 * 238.73407 * 22 20 11 24 24 O 1.21277 * 119.99302 * 359.97438 * 23 22 20 25 25 C 1.50697 * 120.00377 * 180.02562 * 23 22 20 26 26 C 1.52996 * 109.47169 * 179.97438 * 25 23 22 27 27 C 1.50702 * 109.47075 * 179.97438 * 26 25 23 28 28 C 1.34661 * 126.59357 * 274.68623 * 27 26 25 29 29 N 1.34129 * 108.02053 * 179.87433 * 28 27 26 30 30 C 1.30494 * 109.25800 * 0.40086 * 29 28 27 31 31 N 1.35046 * 108.69847 * 359.74951 * 30 29 28 32 32 H 0.96999 * 126.39875 * 179.97438 * 31 30 29 33 33 C 1.47648 * 115.85362 * 58.99792 * 22 20 11 34 34 H 0.97003 * 120.00294 * 0.02562 * 1 2 3 35 35 H 1.09002 * 111.00152 * 21.88718 * 10 9 7 36 36 H 1.08994 * 110.29661 * 259.10993 * 10 9 7 37 37 H 1.09003 * 110.40191 * 100.65131 * 15 9 7 38 38 H 1.08998 * 110.49883 * 338.29527 * 15 9 7 39 39 H 1.09007 * 109.37776 * 179.46047 * 18 16 13 40 40 H 1.09000 * 109.38089 * 299.12373 * 18 16 13 41 41 H 1.09005 * 110.30917 * 241.14398 * 19 18 16 42 42 H 1.09001 * 109.29554 * 120.78955 * 19 18 16 43 43 H 1.09004 * 109.47125 * 59.99524 * 25 23 22 44 44 H 1.09009 * 109.46799 * 299.99673 * 25 23 22 45 45 H 1.08999 * 109.47209 * 300.00070 * 26 25 23 46 46 H 1.09000 * 109.46963 * 59.99716 * 26 25 23 47 47 H 1.08002 * 125.98958 * 0.02562 * 28 27 26 48 48 H 1.07994 * 125.65110 * 179.73748 * 30 29 28 49 49 H 1.09000 * 109.99265 * 119.25984 * 33 22 20 50 50 H 1.09000 * 109.99577 * 240.64297 * 33 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2078 0.1481 9 7 1.3385 -2.3807 -0.1860 10 6 -0.0424 -2.5630 -0.7197 11 6 0.0641 -3.8152 -1.6161 12 1 0.2036 -3.5359 -2.6604 13 6 1.2823 -4.5988 -1.0882 14 1 2.0387 -4.7101 -1.8650 15 6 1.8205 -3.7545 0.0875 16 6 0.8291 -5.9597 -0.5549 17 1 1.6901 -6.5088 -0.1737 18 6 -0.1849 -5.7470 0.5713 19 6 -1.3996 -4.9513 0.0505 20 6 -1.2007 -4.6625 -1.4420 21 1 -2.0661 -4.1464 -1.8576 22 7 -0.9868 -5.9512 -2.1312 23 6 -1.7925 -6.3732 -3.1259 24 8 -2.7282 -5.6879 -3.4803 25 6 -1.5313 -7.6971 -3.7967 26 6 -2.5833 -7.9354 -4.8817 27 6 -2.3218 -9.2590 -5.5530 28 6 -1.4800 -9.4862 -6.5792 29 7 -1.5348 -10.7923 -6.8796 30 6 -2.3850 -11.3815 -6.0841 31 7 -2.8987 -10.4604 -5.2406 32 1 -3.5544 -10.6201 -4.5439 33 6 0.1607 -6.7512 -1.6590 34 1 -0.4851 0.8400 -0.0004 35 1 -0.3509 -1.6991 -1.3083 36 1 -0.7431 -2.7381 0.0966 37 1 1.4164 -4.1178 1.0325 38 1 2.9100 -3.7801 0.1063 39 1 -0.5168 -6.7151 0.9467 40 1 0.2854 -5.1889 1.3809 41 1 -1.4962 -4.0105 0.5925 42 1 -2.3042 -5.5436 0.1884 43 1 -1.5852 -8.4961 -3.0572 44 1 -0.5392 -7.6862 -4.2482 45 1 -3.5752 -7.9464 -4.4300 46 1 -2.5298 -7.1364 -5.6213 47 1 -0.8662 -8.7469 -7.0723 48 1 -2.6363 -12.4317 -6.0980 49 1 -0.1858 -7.7133 -1.2816 50 1 0.8698 -6.9024 -2.4729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089821698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:08 Heat of formation + Delta-G solvation = 33.815798 kcal Electronic energy + Delta-G solvation = -30940.169921 eV Core-core repulsion = 26967.819645 eV Total energy + Delta-G solvation = -3972.350276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.92230 -42.35656 -39.98823 -37.18918 -34.98729 -34.52311 -33.41100 -33.28812 -32.93519 -30.92839 -29.74897 -28.53258 -27.30346 -25.89263 -24.81796 -23.34784 -22.42980 -22.38918 -22.06697 -21.63870 -20.56687 -19.01102 -18.77121 -18.15300 -17.63789 -17.38595 -16.93366 -16.68272 -16.36470 -15.98684 -15.69730 -15.37187 -15.14497 -14.91397 -14.49888 -14.40400 -14.26587 -13.98885 -13.95090 -13.69413 -13.64947 -13.36944 -13.15667 -13.03758 -13.01658 -12.80961 -12.66330 -12.39159 -12.22830 -12.14049 -11.91038 -11.76433 -11.64836 -11.17477 -11.08131 -10.93671 -10.92973 -10.89465 -10.69827 -10.56733 -9.46287 -9.28878 -8.81978 -7.89074 -5.23495 1.12150 1.44086 1.47388 1.53557 1.68808 1.98585 2.25273 2.34837 2.48957 3.30295 3.45338 3.56616 3.70326 3.77599 3.89730 3.95046 4.02852 4.08123 4.16679 4.18629 4.25324 4.29647 4.33325 4.41353 4.51829 4.53360 4.58652 4.63950 4.69358 4.70821 4.79730 4.82682 4.85182 4.98080 5.02645 5.06284 5.12150 5.19790 5.26549 5.31004 5.34496 5.38019 5.47765 5.51431 5.60032 5.71061 5.76364 5.81477 6.20203 6.58146 6.61631 7.02544 7.17582 7.23025 7.72272 8.51324 9.24153 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.002324 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.600019 B =12042.754382 C =12307.540036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.624 5.624 10 C 0.170 3.830 11 C -0.105 4.105 12 H 0.045 0.955 13 C -0.080 4.080 14 H 0.076 0.924 15 C 0.124 3.876 16 C -0.084 4.084 17 H 0.120 0.880 18 C -0.110 4.110 19 C -0.126 4.126 20 C 0.159 3.841 21 H 0.066 0.934 22 N -0.605 5.605 23 C 0.510 3.490 24 O -0.595 6.595 25 C -0.116 4.116 26 C -0.021 4.021 27 C -0.015 4.015 28 C -0.047 4.047 29 N -0.540 5.540 30 C 0.190 3.810 31 N -0.557 5.557 32 H 0.435 0.565 33 C 0.117 3.883 34 H 0.247 0.753 35 H 0.033 0.967 36 H 0.023 0.977 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.168 0.832 48 H 0.243 0.757 49 H 0.106 0.894 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -26.457 -4.405 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.365 4.365 8 H 0.096 0.904 9 N -0.349 5.349 10 C 0.044 3.956 11 C -0.126 4.126 12 H 0.063 0.937 13 C -0.100 4.100 14 H 0.095 0.905 15 C -0.001 4.001 16 C -0.102 4.102 17 H 0.138 0.862 18 C -0.148 4.148 19 C -0.164 4.164 20 C 0.055 3.945 21 H 0.084 0.916 22 N -0.337 5.337 23 C 0.300 3.700 24 O -0.476 6.476 25 C -0.156 4.156 26 C -0.061 4.061 27 C -0.132 4.132 28 C -0.195 4.195 29 N -0.260 5.260 30 C -0.094 4.094 31 N -0.161 5.161 32 H 0.275 0.725 33 C -0.004 4.004 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.186 0.814 48 H 0.259 0.741 49 H 0.124 0.876 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.513 -26.254 -5.204 26.994 hybrid contribution -0.605 2.250 0.811 2.467 sum -4.118 -24.004 -4.393 24.747 Atomic orbital electron populations 1.70092 1.06463 1.25482 1.57517 1.25691 0.96428 1.01170 1.02658 0.85211 0.77234 0.78977 0.78285 1.20611 1.22275 1.19871 1.19325 0.91197 0.83931 1.42001 0.90361 1.45437 1.14081 1.01344 1.74016 1.21663 0.86612 0.93486 0.93812 1.22416 0.95490 0.96328 0.98341 0.93684 1.22037 0.95731 0.94656 0.97543 0.90544 1.22105 0.97246 0.84462 0.96238 1.21041 0.99204 0.94609 0.95390 0.86184 1.21832 0.94612 1.00550 0.97772 1.22164 0.99486 1.00733 0.94024 1.20999 0.96565 0.84020 0.92952 0.91607 1.48761 1.29992 1.20022 1.34965 1.21234 0.81046 0.88758 0.78937 1.90689 1.32559 1.59249 1.65112 1.21615 1.02007 0.93273 0.98682 1.19623 0.99083 0.90507 0.96843 1.21140 1.01713 0.88574 1.01752 1.22316 1.03764 0.93794 0.99587 1.70264 1.20994 1.07431 1.27317 1.25682 0.95450 0.98173 0.90115 1.43293 1.35318 1.07351 1.30167 0.72464 1.21831 0.86792 0.94422 0.97373 0.94416 0.94823 0.95914 0.94030 0.93495 0.89166 0.92005 0.92205 0.91321 0.86471 0.86996 0.90554 0.90146 0.81437 0.74061 0.87626 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.97 10.86 21.65 0.24 -57.74 16 2 C -0.07 -3.80 5.40 84.86 0.46 -3.34 16 3 Si 0.97 46.26 29.56 68.60 2.03 48.29 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.21 10.35 84.03 0.87 -12.34 16 8 H 0.08 4.19 7.84 -2.91 -0.02 4.17 16 9 N -0.62 -31.75 3.40 -685.49 -2.33 -34.08 16 10 C 0.17 8.33 5.22 86.33 0.45 8.78 16 11 C -0.10 -3.96 3.30 -9.86 -0.03 -4.00 16 12 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 13 C -0.08 -2.44 3.16 -9.91 -0.03 -2.47 16 14 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 15 C 0.12 4.73 6.55 86.55 0.57 5.30 16 16 C -0.08 -1.69 2.79 -11.30 -0.03 -1.72 16 17 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 18 C -0.11 -2.48 5.30 31.04 0.16 -2.32 16 19 C -0.13 -3.67 5.62 31.13 0.18 -3.49 16 20 C 0.16 5.18 3.11 44.95 0.14 5.31 16 21 H 0.07 2.57 7.20 -2.39 -0.02 2.55 16 22 N -0.60 -14.84 2.81 -794.05 -2.23 -17.07 16 23 C 0.51 12.74 7.75 87.66 0.68 13.42 16 24 O -0.59 -20.58 15.57 -3.02 -0.05 -20.62 16 25 C -0.12 -1.71 4.62 29.85 0.14 -1.57 16 26 C -0.02 -0.34 5.06 29.85 0.15 -0.19 16 27 C -0.02 -0.23 6.49 40.95 0.27 0.04 16 28 C -0.05 -0.91 11.79 83.52 0.98 0.08 16 29 N -0.54 -10.97 11.25 -200.32 -2.25 -13.22 16 30 C 0.19 2.27 13.04 180.26 2.35 4.62 16 31 N -0.56 -5.52 6.15 -186.50 -1.15 -6.67 16 32 H 0.43 1.47 8.96 -92.71 -0.83 0.64 16 33 C 0.12 1.88 5.16 85.64 0.44 2.32 16 34 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.03 1.94 6.57 -2.39 -0.02 1.93 16 36 H 0.02 1.17 5.21 -2.39 -0.01 1.16 16 37 H 0.04 1.53 5.31 -2.39 -0.01 1.52 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.06 1.61 5.79 -2.39 -0.01 1.60 16 41 H 0.06 2.13 5.67 -2.38 -0.01 2.12 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.12 1.10 8.11 -2.39 -0.02 1.08 16 44 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 46 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 47 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 48 H 0.24 0.71 8.06 -2.91 -0.02 0.69 16 49 H 0.11 1.01 8.11 -2.39 -0.02 0.99 16 50 H 0.09 1.14 8.13 -2.39 -0.02 1.12 16 Total: -1.00 -80.80 380.18 2.12 -78.68 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.13 Total: 14.00 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 7.74 Total: 8.43 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -7.73 Total: -128.77 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.05 Total: -20.62 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -80.80 2.12 -78.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089821698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.497 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds