Wall clock time and date at job start Wed Apr 1 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48497 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47121 * 299.99584 * 3 2 1 6 6 H 1.48503 * 109.47046 * 60.00012 * 3 2 1 7 7 C 1.38809 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00348 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.49464 * 125.94847 * 179.97438 * 9 7 2 11 11 C 1.48324 * 104.05091 * 176.13056 * 10 9 7 12 12 H 1.08998 * 103.61111 * 287.58793 * 11 10 9 13 13 C 1.56277 * 103.92262 * 32.44420 * 11 10 9 14 14 H 1.09002 * 113.68265 * 71.39302 * 13 11 10 15 15 C 1.49361 * 125.95407 * 0.02562 * 9 7 2 16 16 C 1.53571 * 102.42102 * 193.30229 * 13 11 10 17 17 H 1.08993 * 113.71476 * 154.78873 * 16 13 11 18 18 C 1.54117 * 108.70427 * 26.56439 * 16 13 11 19 19 C 1.54920 * 110.01373 * 286.11341 * 18 16 13 20 20 C 1.49194 * 131.67561 * 165.34978 * 11 10 9 21 21 H 1.09004 * 113.94368 * 19.44114 * 20 11 10 22 22 C 1.55914 * 108.48599 * 251.37399 * 20 11 10 23 23 N 1.48478 * 106.37301 * 292.68388 * 22 20 11 24 24 C 1.34789 * 123.22880 * 213.73174 * 23 22 20 25 25 O 1.21283 * 119.99670 * 180.02562 * 24 23 22 26 26 C 1.50692 * 120.00133 * 0.02562 * 24 23 22 27 27 C 1.52996 * 109.47212 * 179.97438 * 26 24 23 28 28 C 1.50705 * 109.47296 * 179.97438 * 27 26 24 29 29 C 1.34668 * 126.58792 * 85.02628 * 28 27 26 30 30 N 1.34126 * 108.01953 * 179.97438 * 29 28 27 31 31 C 1.30501 * 109.25524 * 0.02562 * 30 29 28 32 32 N 1.35043 * 108.69966 * 359.76654 * 31 30 29 33 33 H 0.97003 * 126.39940 * 180.26369 * 32 31 30 34 34 H 0.96993 * 119.99935 * 0.02562 * 1 2 3 35 35 H 1.09000 * 110.51409 * 294.76949 * 10 9 7 36 36 H 1.08996 * 110.51930 * 57.35109 * 10 9 7 37 37 H 1.08998 * 110.71661 * 35.13422 * 15 9 7 38 38 H 1.09006 * 110.86982 * 271.94394 * 15 9 7 39 39 H 1.08999 * 109.54375 * 44.08406 * 18 16 13 40 40 H 1.09000 * 109.54113 * 164.26444 * 18 16 13 41 41 H 1.09006 * 108.93140 * 278.24288 * 19 18 16 42 42 H 1.08993 * 111.29752 * 156.47865 * 19 18 16 43 43 H 1.08997 * 110.06114 * 51.89744 * 22 20 11 44 44 H 1.08999 * 110.06484 * 173.46765 * 22 20 11 45 45 H 1.09002 * 109.47622 * 300.00006 * 26 24 23 46 46 H 1.08999 * 109.47232 * 59.99781 * 26 24 23 47 47 H 1.08997 * 109.47660 * 300.00169 * 27 26 24 48 48 H 1.09004 * 109.46864 * 60.00486 * 27 26 24 49 49 H 1.08002 * 125.99359 * 359.96586 * 29 28 27 50 50 H 1.07997 * 125.64911 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9347 -3.7529 0.0005 11 6 0.7705 -4.6668 0.0976 12 1 0.4341 -4.5451 1.1272 13 6 -0.3640 -3.9133 -0.6687 14 1 -0.2179 -3.8834 -1.7484 15 6 -0.1600 -2.5430 -0.0005 16 6 -1.6176 -4.7013 -0.2612 17 1 -2.5381 -4.1203 -0.3175 18 6 -1.3678 -5.3507 1.1139 19 6 -0.4007 -6.5518 0.9652 20 6 0.6393 -6.1345 -0.1363 21 1 1.5855 -6.6745 -0.1004 22 6 -0.1656 -6.3551 -1.4533 23 7 -1.5463 -5.8797 -1.1846 24 6 -2.6412 -6.4432 -1.7326 25 8 -3.7425 -6.0067 -1.4726 26 6 -2.4971 -7.6156 -2.6683 27 6 -3.8811 -8.0612 -3.1445 28 6 -3.7369 -9.2333 -4.0808 29 6 -3.6368 -10.5306 -3.7335 30 7 -3.5250 -11.2537 -4.8576 31 6 -3.5514 -10.4537 -5.8883 32 7 -3.6874 -9.1844 -5.4478 33 1 -3.7390 -8.3867 -5.9974 34 1 -0.4850 0.8400 -0.0004 35 1 2.4810 -3.9274 -0.9264 36 1 2.5933 -3.8773 0.8600 37 1 -0.6295 -1.7539 -0.5880 38 1 -0.5506 -2.5484 1.0171 39 1 -0.8934 -4.6280 1.7778 40 1 -2.3168 -5.6720 1.5431 41 1 -0.9670 -7.4233 0.6365 42 1 0.1111 -6.7664 1.9033 43 1 0.2780 -5.7770 -2.2639 44 1 -0.1781 -7.4141 -1.7109 45 1 -1.8937 -7.3228 -3.5276 46 1 -2.0102 -8.4394 -2.1464 47 1 -4.4841 -8.3543 -2.2852 48 1 -4.3683 -7.2376 -3.6665 49 1 -3.6450 -10.9204 -2.7263 50 1 -3.4800 -10.7568 -6.9224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089821699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:12 Heat of formation + Delta-G solvation = 80.359048 kcal Electronic energy + Delta-G solvation = -30938.797720 eV Core-core repulsion = 26968.465710 eV Total energy + Delta-G solvation = -3970.332010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.94487 -42.79043 -40.01697 -37.46216 -34.96509 -34.51740 -33.41860 -33.17993 -32.46627 -30.70697 -29.72897 -28.72328 -27.25193 -25.78867 -24.83932 -23.39769 -22.68293 -22.40484 -21.63588 -21.53906 -20.49098 -18.94590 -18.81112 -18.27254 -17.81040 -17.44404 -17.13536 -16.70431 -16.19907 -15.96294 -15.66679 -15.44224 -15.10639 -14.68420 -14.59000 -14.37089 -14.21968 -14.06397 -13.94847 -13.88821 -13.63473 -13.22009 -13.12688 -13.00377 -12.88897 -12.60506 -12.45228 -12.32588 -12.25546 -12.14231 -12.09642 -11.94058 -11.77648 -11.41089 -10.98598 -10.91144 -10.89461 -10.80093 -10.73170 -10.42453 -9.49456 -9.27745 -8.90708 -7.77287 -5.21937 1.12568 1.45015 1.45770 1.56120 1.71003 1.92610 2.25571 2.34382 2.47297 3.28903 3.33671 3.44052 3.45379 3.62661 3.88744 3.94882 4.02572 4.03779 4.06421 4.11493 4.20682 4.24406 4.31076 4.43504 4.51457 4.54280 4.58047 4.63100 4.68921 4.69341 4.74619 4.80762 4.85216 4.92546 4.96886 5.05104 5.11305 5.17998 5.23117 5.28228 5.35889 5.38699 5.39523 5.48499 5.60817 5.67821 5.77464 5.82794 6.25288 6.59649 6.60068 7.05440 7.17403 7.22851 7.72636 8.40117 9.24494 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019789 B = 0.002358 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.587173 B =11873.954569 C =12215.544785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.073 4.073 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.229 4.229 8 H 0.083 0.917 9 N -0.634 5.634 10 C 0.153 3.847 11 C -0.123 4.123 12 H 0.060 0.940 13 C -0.114 4.114 14 H 0.075 0.925 15 C 0.169 3.831 16 C 0.161 3.839 17 H 0.082 0.918 18 C -0.131 4.131 19 C -0.099 4.099 20 C -0.062 4.062 21 H 0.136 0.864 22 C 0.112 3.888 23 N -0.612 5.612 24 C 0.513 3.487 25 O -0.593 6.593 26 C -0.119 4.119 27 C -0.020 4.020 28 C -0.018 4.018 29 C -0.044 4.044 30 N -0.539 5.539 31 C 0.188 3.812 32 N -0.559 5.559 33 H 0.433 0.567 34 H 0.244 0.756 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.067 0.933 38 H -0.009 1.009 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.174 0.826 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 -22.189 -8.606 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.358 4.358 8 H 0.101 0.899 9 N -0.361 5.361 10 C 0.029 3.971 11 C -0.142 4.142 12 H 0.078 0.922 13 C -0.134 4.134 14 H 0.094 0.906 15 C 0.044 3.956 16 C 0.058 3.942 17 H 0.100 0.900 18 C -0.169 4.169 19 C -0.136 4.136 20 C -0.081 4.081 21 H 0.154 0.846 22 C -0.009 4.009 23 N -0.345 5.345 24 C 0.303 3.697 25 O -0.474 6.474 26 C -0.159 4.159 27 C -0.060 4.060 28 C -0.135 4.135 29 C -0.191 4.191 30 N -0.258 5.258 31 C -0.096 4.096 32 N -0.164 5.164 33 H 0.273 0.727 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.009 0.991 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.138 0.862 45 H 0.124 0.876 46 H 0.138 0.862 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.191 0.809 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.464 -22.662 -8.457 24.435 hybrid contribution -0.063 3.058 0.097 3.060 sum -3.527 -19.604 -8.360 21.602 Atomic orbital electron populations 1.70061 1.06261 1.24731 1.59209 1.25628 0.96598 1.00978 1.03333 0.84990 0.78212 0.79482 0.76563 1.18855 1.22037 1.22231 1.19522 0.91041 0.83716 1.41527 0.89885 1.45964 1.02061 1.00867 1.87175 1.20270 0.94462 0.84039 0.98287 1.21257 0.95196 0.95334 1.02377 0.92223 1.23186 0.95074 0.96146 0.99024 0.90638 1.21553 0.84183 0.94163 0.95663 1.22022 0.97106 0.85905 0.89201 0.89969 1.22541 0.99822 0.98795 0.95700 1.22769 0.95372 0.96396 0.99101 1.21913 0.99188 0.92227 0.94763 0.84611 1.22752 0.79589 1.01250 0.97280 1.49766 1.07237 1.30938 1.46590 1.21150 0.83058 0.84819 0.80691 1.90687 1.27050 1.65824 1.63873 1.21645 0.99298 0.95895 0.99068 1.19624 0.96439 0.93040 0.96854 1.21200 1.10760 0.97397 0.84103 1.22357 1.08624 0.89699 0.98418 1.70273 1.21312 1.35165 0.99074 1.25659 1.03549 0.79253 1.01174 1.43343 1.55360 1.10984 1.06687 0.72666 0.94576 0.95148 0.94727 0.91510 0.99116 0.92447 0.91907 0.90362 0.90201 0.91432 0.86192 0.87557 0.86170 0.89456 0.91170 0.80873 0.74277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.71 10.09 21.65 0.22 -57.50 16 2 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 3 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.23 -12.78 10.32 84.03 0.87 -11.91 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.63 -32.25 3.49 -693.63 -2.42 -34.67 16 10 C 0.15 5.89 7.17 84.33 0.60 6.49 16 11 C -0.12 -3.77 2.42 -12.34 -0.03 -3.80 16 12 H 0.06 2.03 3.82 -2.39 -0.01 2.02 16 13 C -0.11 -4.17 2.78 -9.19 -0.03 -4.19 16 14 H 0.08 2.87 7.11 -2.39 -0.02 2.85 16 15 C 0.17 8.35 5.34 86.10 0.46 8.81 16 16 C 0.16 5.14 4.00 44.90 0.18 5.32 16 17 H 0.08 3.09 7.80 -2.39 -0.02 3.07 16 18 C -0.13 -3.63 5.56 31.63 0.18 -3.45 16 19 C -0.10 -1.96 5.64 32.70 0.18 -1.77 16 20 C -0.06 -1.21 4.53 -9.54 -0.04 -1.25 16 21 H 0.14 1.86 8.14 -2.38 -0.02 1.85 16 22 C 0.11 1.98 5.28 87.01 0.46 2.44 16 23 N -0.61 -14.92 2.11 -775.75 -1.64 -16.55 16 24 C 0.51 12.54 7.79 87.65 0.68 13.23 16 25 O -0.59 -19.86 15.95 -3.04 -0.05 -19.91 16 26 C -0.12 -1.75 4.40 29.84 0.13 -1.62 16 27 C -0.02 -0.32 5.06 29.85 0.15 -0.17 16 28 C -0.02 -0.27 6.49 40.95 0.27 -0.01 16 29 C -0.04 -0.79 11.79 83.52 0.98 0.19 16 30 N -0.54 -10.76 11.25 -200.31 -2.25 -13.01 16 31 C 0.19 2.36 13.04 180.26 2.35 4.71 16 32 N -0.56 -6.16 6.15 -186.49 -1.15 -7.31 16 33 H 0.43 2.31 8.96 -92.71 -0.83 1.47 16 34 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 3.87 5.83 -2.39 -0.01 3.85 16 38 H -0.01 -0.48 7.48 -2.38 -0.02 -0.50 16 39 H 0.06 1.84 5.68 -2.39 -0.01 1.83 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 1.34 7.62 -2.38 -0.02 1.32 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.30 7.25 -2.39 -0.02 1.28 16 44 H 0.12 1.19 6.84 -2.39 -0.02 1.17 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.12 1.26 7.64 -2.39 -0.02 1.24 16 47 H 0.09 1.54 8.10 -2.39 -0.02 1.52 16 48 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 49 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 50 H 0.24 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -79.00 380.37 2.74 -76.26 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.13 Total: 15.37 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 7.87 Total: 9.28 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -7.24 Total: -129.04 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -79.00 2.74 -76.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089821699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.619 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds