Wall clock time and date at job start Wed Apr 1 2020 03:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.54451 * 112.30233 * 2 1 4 4 N 1.48324 * 104.32705 * 96.98725 * 3 2 1 5 5 C 1.36940 * 128.20106 * 221.81089 * 4 3 2 6 6 H 1.07999 * 119.99904 * 20.67657 * 5 4 3 7 7 C 1.38809 * 120.00169 * 200.67571 * 5 4 3 8 8 N 1.31629 * 119.99937 * 21.18320 * 7 5 4 9 9 Si 1.86803 * 120.00172 * 201.45621 * 7 5 4 10 10 H 1.48501 * 109.47123 * 179.72497 * 9 7 5 11 11 H 1.48496 * 109.47006 * 299.72324 * 9 7 5 12 12 H 1.48497 * 109.46901 * 59.72472 * 9 7 5 13 13 C 1.48338 * 103.60305 * 42.06804 * 4 3 2 14 14 C 1.54879 * 104.11200 * 317.89905 * 13 4 3 15 15 H 1.08998 * 112.91220 * 262.96929 * 14 13 4 16 16 C 1.55045 * 108.94799 * 136.89071 * 14 13 4 17 17 N 1.47197 * 106.47620 * 229.45159 * 16 14 13 18 18 C 1.34774 * 126.70825 * 211.67507 * 17 16 14 19 19 O 1.21601 * 120.00227 * 174.33368 * 18 17 16 20 20 C 1.47428 * 119.99523 * 354.33614 * 18 17 16 21 21 C 1.41294 * 126.41528 * 352.49325 * 20 18 17 22 22 N 1.30448 * 108.02217 * 179.87982 * 21 20 18 23 23 N 1.39940 * 108.89528 * 0.38341 * 22 21 20 24 24 C 1.46498 * 125.75339 * 179.77781 * 23 22 21 25 25 C 1.53779 * 113.61632 * 194.11148 * 24 23 22 26 26 C 1.53947 * 87.01998 * 220.04271 * 25 24 23 27 27 C 1.53779 * 113.61935 * 96.50021 * 24 23 22 28 28 C 1.34254 * 108.49278 * 359.75219 * 23 22 21 29 29 C 1.47196 * 106.59186 * 31.63669 * 17 16 14 30 30 H 1.08994 * 109.46760 * 61.01300 * 1 2 3 31 31 H 1.08993 * 109.46978 * 181.01485 * 1 2 3 32 32 H 1.08999 * 109.46640 * 301.01789 * 1 2 3 33 33 H 1.09000 * 110.45860 * 338.27566 * 3 2 1 34 34 H 1.09003 * 110.46363 * 215.69821 * 3 2 1 35 35 H 0.96999 * 119.99588 * 6.17553 * 8 7 5 36 36 H 1.08994 * 110.46494 * 76.64442 * 13 4 3 37 37 H 1.09001 * 110.46051 * 199.22555 * 13 4 3 38 38 H 1.08993 * 109.81973 * 110.31649 * 16 14 13 39 39 H 1.09007 * 110.31520 * 348.85032 * 16 14 13 40 40 H 1.07992 * 125.98753 * 0.02562 * 21 20 18 41 41 H 1.09007 * 112.84755 * 325.30610 * 24 23 22 42 42 H 1.09003 * 113.61565 * 334.56899 * 25 24 23 43 43 H 1.09006 * 113.61697 * 105.46302 * 25 24 23 44 44 H 1.09000 * 113.54012 * 270.80826 * 26 25 24 45 45 H 1.09006 * 113.73925 * 139.94218 * 26 25 24 46 46 H 1.08999 * 113.61620 * 254.53178 * 27 24 23 47 47 H 1.08997 * 113.61319 * 25.43448 * 27 24 23 48 48 H 1.08002 * 126.29327 * 179.97438 * 28 23 22 49 49 H 1.09000 * 110.07069 * 209.39381 * 29 17 16 50 50 H 1.09000 * 110.06459 * 87.87483 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1162 1.4290 0.0000 4 7 2.4172 1.7022 1.4264 5 6 2.2029 2.8566 2.1311 6 1 1.4837 3.5801 1.7765 7 6 2.9099 3.0970 3.3012 8 7 4.0455 2.4700 3.5246 9 14 2.2460 4.3046 4.5624 10 1 3.1776 4.3769 5.7166 11 1 2.1203 5.6482 3.9428 12 1 0.9126 3.8484 5.0303 13 6 3.0114 0.4309 1.9073 14 6 2.1222 -0.6660 1.2711 15 1 1.3494 -1.0311 1.9476 16 6 3.0309 -1.8003 0.7311 17 7 2.5949 -2.0626 -0.6501 18 6 2.6294 -3.2456 -1.2948 19 8 2.1421 -3.3479 -2.4042 20 6 3.2580 -4.4157 -0.6550 21 6 3.9902 -4.4183 0.5535 22 7 4.3801 -5.6412 0.7864 23 7 3.9304 -6.4656 -0.2511 24 6 4.1656 -7.9073 -0.3620 25 6 3.8553 -8.4767 -1.7564 26 6 3.2485 -9.6944 -1.0359 27 6 3.0013 -8.7638 0.1631 28 6 3.2465 -5.7127 -1.1274 29 6 2.1130 -0.7806 -1.1894 30 1 -0.3632 0.4980 -0.8989 31 1 -0.3633 -1.0274 0.0182 32 1 -0.3632 0.5296 0.8807 33 1 1.3830 2.1415 -0.3780 34 1 3.0281 1.4668 -0.5959 35 1 4.4336 1.9092 2.8348 36 1 4.0412 0.3372 1.5628 37 1 2.9661 0.3766 2.9950 38 1 2.9049 -2.6959 1.3394 39 1 4.0746 -1.4859 0.7405 40 1 4.1898 -3.5591 1.1764 41 1 5.1388 -8.2085 0.0260 42 1 3.1250 -7.8909 -2.3146 43 1 4.7454 -8.7123 -2.3398 44 1 3.9710 -10.4850 -0.8333 45 1 2.3330 -10.0655 -1.4966 46 1 3.2029 -9.2308 1.1272 47 1 2.0370 -8.2567 0.1308 48 1 2.7745 -6.0582 -2.0353 49 1 1.3392 -0.9563 -1.9367 50 1 2.9409 -0.2258 -1.6311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091670435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:39 Heat of formation + Delta-G solvation = 106.925646 kcal Electronic energy + Delta-G solvation = -30561.930362 eV Core-core repulsion = 26592.750367 eV Total energy + Delta-G solvation = -3969.179995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.76514 -40.14542 -38.94404 -38.01307 -35.16679 -33.06671 -31.97451 -30.92225 -30.45589 -29.71809 -27.05181 -26.36885 -25.82485 -25.62129 -24.94553 -23.14231 -21.97284 -21.40728 -20.47658 -19.77565 -19.47436 -18.63460 -17.70358 -17.27572 -16.41831 -16.22722 -15.60118 -15.43882 -15.09845 -14.84526 -14.49644 -14.14488 -13.88892 -13.65073 -13.59407 -13.37844 -13.25870 -12.90742 -12.84221 -12.71663 -12.59842 -12.26598 -11.98212 -11.83643 -11.63688 -11.37077 -11.26029 -11.21164 -11.03556 -10.80540 -10.70171 -10.50642 -10.20338 -10.11532 -10.09236 -9.96208 -9.72893 -9.71012 -9.37316 -8.87469 -8.55164 -8.40600 -7.00098 -6.11192 -3.20046 1.38004 2.06572 2.09849 3.16569 3.48460 3.49254 3.52061 3.67090 3.69987 3.86692 4.13692 4.18061 4.45157 4.51941 4.55960 4.72600 4.78558 4.95030 5.00252 5.01969 5.08715 5.17469 5.20857 5.26548 5.31808 5.37533 5.40122 5.42890 5.46142 5.52634 5.59921 5.66342 5.69311 5.90176 5.94762 5.96562 6.09857 6.19893 6.23675 6.30147 6.41836 6.48731 6.61752 6.62345 6.65087 6.79908 6.92279 6.99420 7.39218 7.70987 7.74713 8.35036 8.42463 8.96168 9.76983 10.40090 11.24132 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002380 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.207174 B =11762.175576 C =12624.051885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C 0.136 3.864 4 N -0.598 5.598 5 C -0.323 4.323 6 H 0.065 0.935 7 C -0.028 4.028 8 N -0.924 5.924 9 Si 1.070 2.930 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.142 3.858 14 C -0.109 4.109 15 H 0.087 0.913 16 C 0.095 3.905 17 N -0.608 5.608 18 C 0.611 3.389 19 O -0.559 6.559 20 C -0.285 4.285 21 C 0.071 3.929 22 N -0.297 5.297 23 N -0.352 5.352 24 C 0.132 3.868 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.148 4.148 28 C 0.124 3.876 29 C 0.120 3.880 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.268 0.732 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.201 0.799 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.184 0.816 49 H 0.076 0.924 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 -22.769 -8.957 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.089 4.089 3 C 0.010 3.990 4 N -0.322 5.322 5 C -0.451 4.451 6 H 0.083 0.917 7 C -0.229 4.229 8 N -0.565 5.565 9 Si 0.900 3.100 10 H -0.210 1.210 11 H -0.220 1.220 12 H -0.221 1.221 13 C 0.016 3.984 14 C -0.130 4.130 15 H 0.106 0.894 16 C -0.028 4.028 17 N -0.340 5.340 18 C 0.402 3.598 19 O -0.439 6.439 20 C -0.300 4.300 21 C -0.116 4.116 22 N -0.116 5.116 23 N -0.130 5.130 24 C 0.030 3.970 25 C -0.187 4.187 26 C -0.174 4.174 27 C -0.186 4.186 28 C -0.027 4.027 29 C -0.003 4.003 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.217 0.783 41 H 0.144 0.856 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.201 0.799 49 H 0.095 0.905 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.894 -23.008 -7.181 24.119 hybrid contribution -0.582 -0.027 -2.066 2.147 sum -1.476 -23.035 -9.247 24.865 Atomic orbital electron populations 1.21583 0.93363 1.00793 1.01971 1.22352 0.95864 0.97255 0.93418 1.21875 0.96771 0.92057 0.88314 1.45152 1.73260 1.09499 1.04269 1.19760 1.20099 0.97088 1.08117 0.91720 1.25844 0.94675 1.02479 0.99947 1.70783 1.15578 1.32292 1.37885 0.83440 0.75269 0.74974 0.76353 1.21030 1.22022 1.22064 1.21907 0.93211 0.84408 0.98880 1.23445 0.97947 0.94901 0.96661 0.89431 1.22869 0.98914 0.98949 0.82080 1.48277 1.62955 1.08035 1.14737 1.16811 0.78253 0.80630 0.84144 1.90739 1.48710 1.84271 1.20215 1.20195 1.14540 0.94125 1.01140 1.24779 0.95383 0.95767 0.95642 1.77222 1.22607 1.01920 1.09835 1.48627 1.39719 1.07893 1.16781 1.23147 1.01109 0.73812 0.98904 1.23493 1.02583 0.97431 0.95166 1.22734 1.02030 0.96195 0.96474 1.23453 0.98556 0.97027 0.99574 1.22768 0.94167 0.90346 0.95448 1.22172 0.98874 0.82806 0.96453 0.92958 0.93404 0.91740 0.93001 0.95626 0.92067 0.95358 0.91249 0.90273 0.90702 0.78279 0.85621 0.88685 0.89578 0.89198 0.89963 0.89957 0.89149 0.79868 0.90523 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 8.58 37.16 0.32 -1.55 16 2 C -0.09 -1.46 1.07 -152.17 -0.16 -1.62 16 3 C 0.14 2.74 6.37 -2.28 -0.01 2.73 16 4 N -0.60 -14.55 3.24 -168.21 -0.54 -15.09 16 5 C -0.32 -8.85 10.25 -15.06 -0.15 -9.01 16 6 H 0.07 1.77 7.92 -52.49 -0.42 1.35 16 7 C -0.03 -0.80 5.19 -17.43 -0.09 -0.89 16 8 N -0.92 -27.29 12.70 55.49 0.70 -26.58 16 9 Si 1.07 24.96 29.97 -169.99 -5.09 19.87 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.14 3.08 4.66 -2.04 -0.01 3.07 16 14 C -0.11 -1.86 3.83 -87.36 -0.33 -2.20 16 15 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 16 C 0.10 1.38 4.93 -2.58 -0.01 1.37 16 17 N -0.61 -9.41 3.32 -172.10 -0.57 -9.98 16 18 C 0.61 9.79 7.86 -12.52 -0.10 9.69 16 19 O -0.56 -10.36 17.11 5.28 0.09 -10.27 16 20 C -0.29 -3.90 6.05 -105.06 -0.64 -4.54 16 21 C 0.07 0.92 10.28 -16.98 -0.17 0.75 16 22 N -0.30 -3.87 12.50 30.86 0.39 -3.49 16 23 N -0.35 -3.75 3.77 -53.53 -0.20 -3.95 16 24 C 0.13 0.92 5.01 -67.12 -0.34 0.59 16 25 C -0.15 -0.71 7.45 -25.83 -0.19 -0.90 16 26 C -0.14 -0.52 8.09 -25.83 -0.21 -0.73 16 27 C -0.15 -0.85 7.88 -25.92 -0.20 -1.05 16 28 C 0.12 1.41 10.51 -16.56 -0.17 1.23 16 29 C 0.12 1.89 6.24 -3.27 -0.02 1.87 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 1.03 7.92 -51.93 -0.41 0.62 16 34 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 35 H 0.27 7.86 6.18 -40.82 -0.25 7.60 16 36 H 0.03 0.62 6.83 -51.93 -0.35 0.27 16 37 H 0.07 1.68 7.20 -51.93 -0.37 1.30 16 38 H 0.08 1.01 5.34 -51.93 -0.28 0.73 16 39 H 0.07 1.07 7.04 -51.92 -0.37 0.71 16 40 H 0.20 2.31 5.03 -52.49 -0.26 2.05 16 41 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.47 6.29 -51.93 -0.33 0.14 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.18 1.67 6.66 -52.49 -0.35 1.32 16 49 H 0.08 1.21 7.56 -51.93 -0.39 0.82 16 50 H 0.07 1.09 7.11 -51.93 -0.37 0.72 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -33.81 387.62 -9.43 -43.24 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.54 Total: 1.60 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.51 Total: -1.20 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.23 Total: -59.09 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.09 Total: 19.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.81 -9.43 -43.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091670435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.169 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds