Wall clock time and date at job start Wed Apr 1 2020 03:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.54451 * 112.30233 * 2 1 4 4 N 1.48324 * 104.32705 * 96.98725 * 3 2 1 5 5 C 1.36940 * 128.20106 * 221.81089 * 4 3 2 6 6 H 1.07999 * 119.99904 * 20.67657 * 5 4 3 7 7 C 1.38809 * 120.00169 * 200.67571 * 5 4 3 8 8 N 1.31629 * 119.99937 * 21.18320 * 7 5 4 9 9 Si 1.86803 * 120.00172 * 201.45621 * 7 5 4 10 10 H 1.48501 * 109.47123 * 179.72497 * 9 7 5 11 11 H 1.48496 * 109.47006 * 299.72324 * 9 7 5 12 12 H 1.48497 * 109.46901 * 59.72472 * 9 7 5 13 13 C 1.48338 * 103.60305 * 42.06804 * 4 3 2 14 14 C 1.54879 * 104.11200 * 317.89905 * 13 4 3 15 15 H 1.08998 * 112.91220 * 262.96929 * 14 13 4 16 16 C 1.55045 * 108.94799 * 136.89071 * 14 13 4 17 17 N 1.47197 * 106.47620 * 229.45159 * 16 14 13 18 18 C 1.34774 * 126.70825 * 211.67507 * 17 16 14 19 19 O 1.21601 * 120.00227 * 174.33368 * 18 17 16 20 20 C 1.47428 * 119.99523 * 354.33614 * 18 17 16 21 21 C 1.41294 * 126.41528 * 352.49325 * 20 18 17 22 22 N 1.30448 * 108.02217 * 179.87982 * 21 20 18 23 23 N 1.39940 * 108.89528 * 0.38341 * 22 21 20 24 24 C 1.46498 * 125.75339 * 179.77781 * 23 22 21 25 25 C 1.53779 * 113.61632 * 194.11148 * 24 23 22 26 26 C 1.53947 * 87.01998 * 220.04271 * 25 24 23 27 27 C 1.53779 * 113.61935 * 96.50021 * 24 23 22 28 28 C 1.34254 * 108.49278 * 359.75219 * 23 22 21 29 29 C 1.47196 * 106.59186 * 31.63669 * 17 16 14 30 30 H 1.08994 * 109.46760 * 61.01300 * 1 2 3 31 31 H 1.08993 * 109.46978 * 181.01485 * 1 2 3 32 32 H 1.08999 * 109.46640 * 301.01789 * 1 2 3 33 33 H 1.09000 * 110.45860 * 338.27566 * 3 2 1 34 34 H 1.09003 * 110.46363 * 215.69821 * 3 2 1 35 35 H 0.96999 * 119.99588 * 6.17553 * 8 7 5 36 36 H 1.08994 * 110.46494 * 76.64442 * 13 4 3 37 37 H 1.09001 * 110.46051 * 199.22555 * 13 4 3 38 38 H 1.08993 * 109.81973 * 110.31649 * 16 14 13 39 39 H 1.09007 * 110.31520 * 348.85032 * 16 14 13 40 40 H 1.07992 * 125.98753 * 0.02562 * 21 20 18 41 41 H 1.09007 * 112.84755 * 325.30610 * 24 23 22 42 42 H 1.09003 * 113.61565 * 334.56899 * 25 24 23 43 43 H 1.09006 * 113.61697 * 105.46302 * 25 24 23 44 44 H 1.09000 * 113.54012 * 270.80826 * 26 25 24 45 45 H 1.09006 * 113.73925 * 139.94218 * 26 25 24 46 46 H 1.08999 * 113.61620 * 254.53178 * 27 24 23 47 47 H 1.08997 * 113.61319 * 25.43448 * 27 24 23 48 48 H 1.08002 * 126.29327 * 179.97438 * 28 23 22 49 49 H 1.09000 * 110.07069 * 209.39381 * 29 17 16 50 50 H 1.09000 * 110.06459 * 87.87483 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1162 1.4290 0.0000 4 7 2.4172 1.7022 1.4264 5 6 2.2029 2.8566 2.1311 6 1 1.4837 3.5801 1.7765 7 6 2.9099 3.0970 3.3012 8 7 4.0455 2.4700 3.5246 9 14 2.2460 4.3046 4.5624 10 1 3.1776 4.3769 5.7166 11 1 2.1203 5.6482 3.9428 12 1 0.9126 3.8484 5.0303 13 6 3.0114 0.4309 1.9073 14 6 2.1222 -0.6660 1.2711 15 1 1.3494 -1.0311 1.9476 16 6 3.0309 -1.8003 0.7311 17 7 2.5949 -2.0626 -0.6501 18 6 2.6294 -3.2456 -1.2948 19 8 2.1421 -3.3479 -2.4042 20 6 3.2580 -4.4157 -0.6550 21 6 3.9902 -4.4183 0.5535 22 7 4.3801 -5.6412 0.7864 23 7 3.9304 -6.4656 -0.2511 24 6 4.1656 -7.9073 -0.3620 25 6 3.8553 -8.4767 -1.7564 26 6 3.2485 -9.6944 -1.0359 27 6 3.0013 -8.7638 0.1631 28 6 3.2465 -5.7127 -1.1274 29 6 2.1130 -0.7806 -1.1894 30 1 -0.3632 0.4980 -0.8989 31 1 -0.3633 -1.0274 0.0182 32 1 -0.3632 0.5296 0.8807 33 1 1.3830 2.1415 -0.3780 34 1 3.0281 1.4668 -0.5959 35 1 4.4336 1.9092 2.8348 36 1 4.0412 0.3372 1.5628 37 1 2.9661 0.3766 2.9950 38 1 2.9049 -2.6959 1.3394 39 1 4.0746 -1.4859 0.7405 40 1 4.1898 -3.5591 1.1764 41 1 5.1388 -8.2085 0.0260 42 1 3.1250 -7.8909 -2.3146 43 1 4.7454 -8.7123 -2.3398 44 1 3.9710 -10.4850 -0.8333 45 1 2.3330 -10.0655 -1.4966 46 1 3.2029 -9.2308 1.1272 47 1 2.0370 -8.2567 0.1308 48 1 2.7745 -6.0582 -2.0353 49 1 1.3392 -0.9563 -1.9367 50 1 2.9409 -0.2258 -1.6311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091670435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:38 Heat of formation + Delta-G solvation = 86.920548 kcal Electronic energy + Delta-G solvation = -30562.797849 eV Core-core repulsion = 26592.750367 eV Total energy + Delta-G solvation = -3970.047482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.66857 -41.45239 -39.73495 -39.15096 -36.78475 -34.66863 -33.01267 -32.38835 -31.59337 -31.24339 -28.20230 -27.44493 -27.00984 -26.76538 -26.04009 -24.57120 -22.93843 -22.56713 -22.00058 -20.72866 -20.23571 -20.02408 -19.33875 -18.54359 -17.51110 -16.97915 -16.66052 -16.60660 -16.19195 -16.06436 -15.85971 -15.68519 -15.37699 -15.29612 -14.82099 -14.37903 -14.24111 -14.06482 -13.93496 -13.69194 -13.46296 -13.38617 -13.21391 -13.00108 -12.81715 -12.52127 -12.45501 -12.39186 -12.33837 -12.09744 -11.89672 -11.66888 -11.64398 -11.56965 -11.53475 -11.49623 -11.36581 -10.92988 -10.60381 -10.57297 -9.92713 -9.59779 -9.00973 -8.28641 -5.33696 0.44477 1.06034 1.30695 1.60016 1.67783 1.86114 1.96697 2.34099 2.65997 3.11820 3.24516 3.32398 3.36788 3.43952 3.64881 3.69302 3.76232 3.76521 3.80462 3.88251 3.97554 4.10115 4.14843 4.24511 4.29734 4.39759 4.46540 4.51428 4.61493 4.65277 4.68852 4.72061 4.73613 4.82280 4.88547 4.91814 4.92235 4.96528 5.01090 5.03352 5.09899 5.19622 5.24128 5.27924 5.34068 5.39810 5.41097 5.68519 5.84261 6.33006 6.45450 6.52460 6.87872 7.12085 7.69459 8.38047 9.07084 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002380 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.207174 B =11762.175576 C =12624.051885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C 0.135 3.865 4 N -0.624 5.624 5 C -0.328 4.328 6 H 0.060 0.940 7 C -0.082 4.082 8 N -0.953 5.953 9 Si 1.119 2.881 10 H -0.293 1.293 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.150 3.850 14 C -0.099 4.099 15 H 0.092 0.908 16 C 0.105 3.895 17 N -0.608 5.608 18 C 0.613 3.387 19 O -0.588 6.588 20 C -0.312 4.312 21 C 0.070 3.930 22 N -0.320 5.320 23 N -0.343 5.343 24 C 0.113 3.887 25 C -0.143 4.143 26 C -0.123 4.123 27 C -0.148 4.148 28 C 0.137 3.863 29 C 0.125 3.875 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.025 0.975 35 H 0.256 0.744 36 H 0.022 0.978 37 H 0.037 0.963 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.206 0.794 41 H 0.133 0.867 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.207 0.793 49 H 0.081 0.919 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 -24.898 -9.875 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.078 4.078 3 C 0.010 3.990 4 N -0.348 5.348 5 C -0.457 4.457 6 H 0.078 0.922 7 C -0.277 4.277 8 N -0.596 5.596 9 Si 0.943 3.057 10 H -0.219 1.219 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.024 3.976 14 C -0.120 4.120 15 H 0.111 0.889 16 C -0.018 4.018 17 N -0.339 5.339 18 C 0.405 3.595 19 O -0.470 6.470 20 C -0.327 4.327 21 C -0.117 4.117 22 N -0.139 5.139 23 N -0.120 5.120 24 C 0.013 3.987 25 C -0.181 4.181 26 C -0.161 4.161 27 C -0.187 4.187 28 C -0.016 4.016 29 C 0.002 3.998 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.223 0.777 41 H 0.150 0.850 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.223 0.777 49 H 0.100 0.900 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.703 -25.172 -8.116 26.503 hybrid contribution -0.304 0.549 -1.852 1.955 sum -2.007 -24.623 -9.968 26.640 Atomic orbital electron populations 1.21529 0.92014 1.01578 1.01958 1.22226 0.96774 0.95111 0.93695 1.22003 0.96845 0.94097 0.86090 1.45407 1.73525 1.09657 1.06260 1.20008 1.19254 0.97972 1.08422 0.92173 1.27173 0.94499 1.03944 1.02062 1.70887 1.17010 1.33935 1.37816 0.82791 0.74948 0.73930 0.74007 1.21867 1.20224 1.20593 1.21801 0.93658 0.85036 0.97123 1.23287 0.97638 0.94424 0.96642 0.88941 1.22777 0.98250 0.98778 0.81983 1.48253 1.62924 1.07919 1.14848 1.17079 0.77712 0.80948 0.83769 1.90716 1.50163 1.84705 1.21414 1.20117 1.16224 0.94264 1.02050 1.24847 0.95228 0.96086 0.95539 1.77176 1.23383 1.02225 1.11103 1.48971 1.38402 1.08939 1.15692 1.23689 1.02057 0.71847 1.01102 1.23527 1.03162 0.97431 0.94008 1.22724 1.02683 0.95838 0.94819 1.23450 0.97351 0.97194 1.00670 1.23094 0.93117 0.89695 0.95723 1.22059 0.98966 0.82953 0.95841 0.91415 0.92098 0.93391 0.93028 0.95697 0.93333 0.96073 0.94467 0.88100 0.90437 0.77733 0.84966 0.88644 0.88401 0.87722 0.89085 0.89764 0.90236 0.77682 0.90023 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.37 8.58 71.98 0.62 -2.75 16 2 C -0.08 -2.49 1.07 -50.67 -0.05 -2.54 16 3 C 0.14 5.44 6.37 86.52 0.55 5.99 16 4 N -0.62 -30.94 3.24 -686.10 -2.22 -33.16 16 5 C -0.33 -18.30 10.25 84.03 0.86 -17.44 16 6 H 0.06 3.33 7.92 -2.91 -0.02 3.31 16 7 C -0.08 -4.64 5.19 84.86 0.44 -4.20 16 8 N -0.95 -57.86 12.70 21.65 0.28 -57.58 16 9 Si 1.12 50.84 29.97 68.60 2.06 52.90 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 13 C 0.15 6.64 4.66 86.67 0.40 7.05 16 14 C -0.10 -3.37 3.83 -8.68 -0.03 -3.40 16 15 H 0.09 3.08 7.93 -2.39 -0.02 3.06 16 16 C 0.11 2.95 4.93 86.95 0.43 3.38 16 17 N -0.61 -18.06 3.32 -816.66 -2.71 -20.77 16 18 C 0.61 18.85 7.86 86.66 0.68 19.53 16 19 O -0.59 -21.03 17.11 -4.03 -0.07 -21.10 16 20 C -0.31 -8.11 6.05 -20.15 -0.12 -8.24 16 21 C 0.07 1.73 10.28 85.65 0.88 2.61 16 22 N -0.32 -7.97 12.50 -56.28 -0.70 -8.67 16 23 N -0.34 -6.72 3.77 -323.26 -1.22 -7.94 16 24 C 0.11 1.35 5.01 45.52 0.23 1.57 16 25 C -0.14 -0.97 7.45 31.18 0.23 -0.74 16 26 C -0.12 -0.57 8.09 31.18 0.25 -0.32 16 27 C -0.15 -1.41 7.88 31.12 0.25 -1.16 16 28 C 0.14 2.86 10.51 84.28 0.89 3.74 16 29 C 0.12 3.79 6.24 86.50 0.54 4.33 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 34 H 0.03 1.02 7.18 -2.39 -0.02 1.00 16 35 H 0.26 15.62 6.18 -92.71 -0.57 15.05 16 36 H 0.02 0.97 6.83 -2.39 -0.02 0.95 16 37 H 0.04 1.86 7.20 -2.39 -0.02 1.85 16 38 H 0.10 2.44 5.34 -2.39 -0.01 2.43 16 39 H 0.08 2.18 7.04 -2.38 -0.02 2.16 16 40 H 0.21 4.57 5.03 -2.91 -0.01 4.55 16 41 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.10 0.67 6.29 -2.39 -0.02 0.65 16 43 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.21 3.24 6.66 -2.91 -0.02 3.22 16 49 H 0.08 2.44 7.56 -2.39 -0.02 2.42 16 50 H 0.07 2.09 7.11 -2.39 -0.02 2.07 16 Total: -1.00 -73.86 387.62 3.59 -70.27 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.15 Total: 18.63 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 7.04 Total: 7.43 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -6.58 Total: -128.13 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.07 Total: -21.10 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.06 Total: 52.90 kcal Total: -73.86 3.59 -70.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091670435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.192 kcal (2) G-P(sol) polarization free energy of solvation -73.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds