Wall clock time and date at job start Wed Apr 1 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53766 * 112.06747 * 2 1 4 4 N 1.47200 * 106.40738 * 103.41768 * 3 2 1 5 5 C 1.36937 * 126.70412 * 211.29161 * 4 3 2 6 6 H 1.08003 * 119.99848 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99953 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99703 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46966 * 60.00361 * 9 7 5 11 11 H 1.48502 * 109.46844 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47496 * 300.00147 * 9 7 5 13 13 C 1.47203 * 106.59326 * 31.32988 * 4 3 2 14 14 C 1.53759 * 106.40755 * 328.66720 * 13 4 3 15 15 H 1.08993 * 112.06564 * 256.58138 * 14 13 4 16 16 C 1.54323 * 109.07822 * 130.79030 * 14 13 4 17 17 N 1.48103 * 104.71126 * 271.65813 * 16 14 13 18 18 C 1.34779 * 127.84326 * 140.24094 * 17 16 14 19 19 O 1.21283 * 120.00156 * 354.94852 * 18 17 16 20 20 C 1.50700 * 119.99983 * 174.94874 * 18 17 16 21 21 H 1.08999 * 109.71443 * 27.85518 * 20 18 17 22 22 C 1.53374 * 109.71676 * 148.49955 * 20 18 17 23 23 C 1.53020 * 109.75075 * 170.32720 * 22 20 18 24 24 C 1.53391 * 109.72079 * 288.27359 * 23 22 20 25 25 C 1.50875 * 108.19190 * 50.53816 * 24 23 22 26 26 C 1.34576 * 128.32634 * 163.25497 * 25 24 23 27 27 N 1.35203 * 107.61818 * 180.28476 * 26 25 24 28 28 H 0.97004 * 126.00132 * 179.97438 * 27 26 25 29 29 N 1.40306 * 107.99271 * 359.95823 * 27 26 25 30 30 C 1.30129 * 108.12760 * 359.96491 * 29 27 26 31 31 C 1.48106 * 104.31310 * 320.21599 * 17 16 14 32 32 H 1.08995 * 109.46773 * 301.82790 * 1 2 3 33 33 H 1.09004 * 109.46702 * 61.82736 * 1 2 3 34 34 H 1.09000 * 109.46928 * 181.82514 * 1 2 3 35 35 H 1.09002 * 110.06925 * 222.65507 * 3 2 1 36 36 H 1.09004 * 110.06699 * 344.18043 * 3 2 1 37 37 H 0.96994 * 120.00062 * 180.02562 * 8 7 5 38 38 H 1.08994 * 110.06944 * 209.43032 * 13 4 3 39 39 H 1.09001 * 110.11315 * 87.92762 * 13 4 3 40 40 H 1.08999 * 110.38240 * 30.46673 * 16 14 13 41 41 H 1.08997 * 110.38494 * 152.72884 * 16 14 13 42 42 H 1.09004 * 109.42374 * 290.40804 * 22 20 18 43 43 H 1.09001 * 109.42607 * 50.23716 * 22 20 18 44 44 H 1.08998 * 109.43376 * 168.19653 * 23 22 20 45 45 H 1.09005 * 109.43123 * 48.34858 * 23 22 20 46 46 H 1.08998 * 109.71558 * 290.86143 * 24 23 22 47 47 H 1.08995 * 109.71819 * 170.21414 * 24 23 22 48 48 H 1.07996 * 126.18865 * 0.32143 * 26 25 24 49 49 H 1.09010 * 110.39032 * 280.97568 * 31 17 16 50 50 H 1.09000 * 110.39272 * 158.59602 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1077 1.4250 0.0000 4 7 2.5676 1.6872 1.3735 5 6 2.5904 2.8986 2.0118 6 1 2.2461 3.7851 1.5000 7 6 3.0559 2.9869 3.3165 8 7 3.4760 1.9066 3.9400 9 14 3.0863 4.6393 4.1873 10 1 1.7074 5.1855 4.2607 11 1 3.6241 4.4652 5.5605 12 1 3.9522 5.5807 3.4328 13 6 2.9991 0.3931 1.9266 14 6 2.1156 -0.6779 1.2658 15 1 1.3366 -1.0377 1.9379 16 6 3.0143 -1.8106 0.7264 17 7 3.3759 -1.3831 -0.6447 18 6 4.5671 -1.5079 -1.2627 19 8 5.5236 -1.9391 -0.6543 20 6 4.7106 -1.1118 -2.7096 21 1 3.9855 -0.3348 -2.9517 22 6 6.1310 -0.5931 -2.9656 23 6 6.3545 -0.4183 -4.4693 24 6 6.4647 -1.7937 -5.1395 25 6 5.2863 -2.6273 -4.7006 26 6 4.8095 -3.7565 -5.2563 27 7 3.7386 -4.1493 -4.5305 28 1 3.1925 -4.9332 -4.6985 29 7 3.5562 -3.2241 -3.4916 30 6 4.4817 -2.3149 -3.5920 31 6 2.1310 -0.7878 -1.1829 32 1 -0.3633 0.5419 0.8731 33 1 -0.3633 0.4852 -0.9060 34 1 -0.3633 -1.0271 0.0327 35 1 2.9461 1.4888 -0.6937 36 1 1.3353 2.1417 -0.2791 37 1 3.8009 1.9683 4.8518 38 1 2.8558 0.3817 3.0071 39 1 4.0471 0.2136 1.6867 40 1 3.9087 -1.9109 1.3412 41 1 2.4647 -2.7515 0.7003 42 1 6.2621 0.3667 -2.4658 43 1 6.8543 -1.3074 -2.5722 44 1 7.2748 0.1413 -4.6366 45 1 5.5153 0.1284 -4.8995 46 1 7.3921 -2.2782 -4.8342 47 1 6.4494 -1.6770 -6.2231 48 1 5.2103 -4.2583 -6.1245 49 1 1.4445 -1.5706 -1.5058 50 1 2.3583 -0.1158 -2.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091674538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:40 Heat of formation + Delta-G solvation = 68.458289 kcal Electronic energy + Delta-G solvation = -31778.709160 eV Core-core repulsion = 27807.861095 eV Total energy + Delta-G solvation = -3970.848065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.70703 -40.10077 -38.35645 -36.24138 -34.78838 -32.72736 -32.35384 -30.78323 -30.59256 -30.04755 -28.74484 -26.35242 -25.90682 -25.11632 -24.41885 -22.58600 -21.89368 -21.37788 -20.11609 -19.45592 -18.59740 -18.31536 -17.76606 -16.98639 -16.52720 -15.72055 -15.43714 -15.11524 -14.72273 -14.44958 -14.27921 -13.91546 -13.73627 -13.65309 -13.46285 -13.35902 -12.88674 -12.57029 -12.50847 -12.47061 -12.13855 -11.91965 -11.73208 -11.52532 -11.39182 -11.22388 -11.01200 -10.92387 -10.88192 -10.80860 -10.76495 -10.53043 -10.10837 -10.02078 -9.89132 -9.77288 -9.66773 -9.38392 -9.24665 -8.65900 -8.57812 -8.26390 -6.82265 -5.58730 -3.04388 1.73283 2.48892 2.64417 2.99580 3.32897 3.42554 3.46665 3.48327 4.26286 4.50877 4.54199 4.68674 4.79080 4.90544 4.93447 5.08184 5.10820 5.22674 5.32916 5.37240 5.39219 5.55235 5.58252 5.62139 5.66896 5.71218 5.76300 5.78440 5.84601 5.94093 5.98579 5.99526 6.04854 6.10273 6.13874 6.27935 6.33092 6.38778 6.44178 6.45888 6.49438 6.63252 6.71089 6.85605 7.01156 7.11268 7.50717 7.58891 7.63710 7.90195 7.95100 8.45741 8.49913 9.25397 9.86497 10.54917 11.41617 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.003164 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.504293 B = 8846.456776 C = 9548.897037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.091 4.091 3 C 0.147 3.853 4 N -0.594 5.594 5 C -0.220 4.220 6 H 0.077 0.923 7 C -0.011 4.011 8 N -0.920 5.920 9 Si 0.915 3.085 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.144 3.856 14 C -0.117 4.117 15 H 0.085 0.915 16 C 0.115 3.885 17 N -0.604 5.604 18 C 0.549 3.451 19 O -0.541 6.541 20 C -0.021 4.021 21 H 0.106 0.894 22 C -0.104 4.104 23 C -0.116 4.116 24 C -0.042 4.042 25 C -0.228 4.228 26 C 0.057 3.943 27 N -0.484 5.484 28 H 0.439 0.561 29 N -0.274 5.274 30 C 0.097 3.903 31 C 0.118 3.882 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.014 0.986 36 H 0.041 0.959 37 H 0.253 0.747 38 H 0.121 0.879 39 H 0.009 0.991 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.176 0.824 49 H 0.068 0.932 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 -11.066 -20.393 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.093 4.093 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.348 4.348 6 H 0.095 0.905 7 C -0.207 4.207 8 N -0.568 5.568 9 Si 0.746 3.254 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.018 3.982 14 C -0.137 4.137 15 H 0.104 0.896 16 C -0.007 4.007 17 N -0.337 5.337 18 C 0.337 3.663 19 O -0.418 6.418 20 C -0.045 4.045 21 H 0.124 0.876 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.080 4.080 25 C -0.239 4.239 26 C -0.088 4.088 27 N -0.193 5.193 28 H 0.282 0.718 29 N -0.096 5.096 30 C -0.072 4.072 31 C -0.005 4.005 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.138 0.862 39 H 0.027 0.973 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.193 0.807 49 H 0.086 0.914 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.702 -11.584 -19.240 22.469 hybrid contribution 0.297 0.528 -0.253 0.657 sum -0.405 -11.055 -19.494 22.414 Atomic orbital electron populations 1.21574 0.93281 1.00987 1.01932 1.22342 0.95339 0.97292 0.94347 1.21372 0.95520 0.92174 0.88961 1.44480 1.73770 1.04627 1.08873 1.19030 1.35952 0.84726 0.95099 0.90517 1.24774 1.01331 0.97506 0.97066 1.69610 1.48832 1.25929 1.12453 0.86143 0.77625 0.82869 0.78790 1.21215 1.21588 1.21266 1.21948 0.92619 0.81494 1.02124 1.23247 0.98143 0.96372 0.95964 0.89639 1.22340 0.99288 0.96453 0.82623 1.48714 1.09891 1.59220 1.15826 1.19631 0.81146 0.77948 0.87590 1.90681 1.37483 1.46834 1.66791 1.19833 1.00746 0.93570 0.90313 0.87611 1.21501 0.93864 1.02437 0.96475 1.21564 1.02308 0.96624 0.94838 1.20024 0.94479 0.93991 0.99485 1.20089 1.03622 0.99907 1.00319 1.22026 0.91105 0.97091 0.98619 1.46332 1.25658 1.23925 1.23362 0.71767 1.77114 1.22891 1.01764 1.07825 1.21722 0.93857 0.95711 0.95929 1.22402 0.85443 0.96283 0.96370 0.91660 0.93043 0.93148 0.96864 0.94080 0.93622 0.86180 0.97257 0.89885 0.92207 0.90353 0.89876 0.90912 0.91605 0.91085 0.91186 0.80714 0.91351 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.61 37.16 0.32 -1.42 16 2 C -0.09 -1.55 1.08 -152.33 -0.16 -1.72 16 3 C 0.15 3.03 6.37 -3.26 -0.02 3.01 16 4 N -0.59 -15.25 3.39 -171.17 -0.58 -15.83 16 5 C -0.22 -6.13 10.34 -15.06 -0.16 -6.29 16 6 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 7 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 8 N -0.92 -27.07 10.08 55.49 0.56 -26.51 16 9 Si 0.92 22.22 29.55 -169.99 -5.02 17.20 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.14 3.55 5.70 -3.26 -0.02 3.53 16 14 C -0.12 -2.24 3.73 -88.44 -0.33 -2.57 16 15 H 0.09 1.56 7.90 -51.93 -0.41 1.15 16 16 C 0.12 2.09 6.34 -2.47 -0.02 2.07 16 17 N -0.60 -10.61 3.31 -169.46 -0.56 -11.17 16 18 C 0.55 10.06 6.88 -10.98 -0.08 9.98 16 19 O -0.54 -11.80 16.28 5.56 0.09 -11.71 16 20 C -0.02 -0.31 2.62 -92.61 -0.24 -0.55 16 21 H 0.11 1.40 6.41 -51.93 -0.33 1.06 16 22 C -0.10 -1.34 4.97 -26.53 -0.13 -1.47 16 23 C -0.12 -1.09 5.87 -26.52 -0.16 -1.24 16 24 C -0.04 -0.36 6.28 -27.60 -0.17 -0.54 16 25 C -0.23 -2.50 5.89 -104.98 -0.62 -3.12 16 26 C 0.06 0.49 11.95 -17.36 -0.21 0.29 16 27 N -0.48 -4.71 7.37 30.35 0.22 -4.49 16 28 H 0.44 2.76 8.96 -182.44 -1.64 1.12 16 29 N -0.27 -3.80 12.58 33.75 0.42 -3.37 16 30 C 0.10 1.33 6.42 -82.34 -0.53 0.80 16 31 C 0.12 1.79 5.76 -2.47 -0.01 1.78 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.01 0.29 7.45 -51.93 -0.39 -0.10 16 36 H 0.04 0.82 7.83 -51.93 -0.41 0.41 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.12 3.35 5.44 -51.93 -0.28 3.06 16 39 H 0.01 0.26 7.45 -51.93 -0.39 -0.13 16 40 H 0.08 1.67 7.36 -51.93 -0.38 1.29 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.20 7.48 -51.93 -0.39 0.81 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.07 0.94 7.99 -51.92 -0.42 0.53 16 50 H 0.07 1.01 6.03 -51.93 -0.31 0.69 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -35.14 385.90 -10.79 -45.94 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -9.11 Total: 2.00 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.63 Total: 2.13 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.07 Total: -61.37 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.14 -10.79 -45.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091674538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.395 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds