Wall clock time and date at job start Wed Apr 1 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53766 * 112.06747 * 2 1 4 4 N 1.47200 * 106.40738 * 103.41768 * 3 2 1 5 5 C 1.36937 * 126.70412 * 211.29161 * 4 3 2 6 6 H 1.08003 * 119.99848 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99953 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99703 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46966 * 60.00361 * 9 7 5 11 11 H 1.48502 * 109.46844 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47496 * 300.00147 * 9 7 5 13 13 C 1.47203 * 106.59326 * 31.32988 * 4 3 2 14 14 C 1.53759 * 106.40755 * 328.66720 * 13 4 3 15 15 H 1.08993 * 112.06564 * 256.58138 * 14 13 4 16 16 C 1.54323 * 109.07822 * 130.79030 * 14 13 4 17 17 N 1.48103 * 104.71126 * 271.65813 * 16 14 13 18 18 C 1.34779 * 127.84326 * 140.24094 * 17 16 14 19 19 O 1.21283 * 120.00156 * 354.94852 * 18 17 16 20 20 C 1.50700 * 119.99983 * 174.94874 * 18 17 16 21 21 H 1.08999 * 109.71443 * 27.85518 * 20 18 17 22 22 C 1.53374 * 109.71676 * 148.49955 * 20 18 17 23 23 C 1.53020 * 109.75075 * 170.32720 * 22 20 18 24 24 C 1.53391 * 109.72079 * 288.27359 * 23 22 20 25 25 C 1.50875 * 108.19190 * 50.53816 * 24 23 22 26 26 C 1.34576 * 128.32634 * 163.25497 * 25 24 23 27 27 N 1.35203 * 107.61818 * 180.28476 * 26 25 24 28 28 H 0.97004 * 126.00132 * 179.97438 * 27 26 25 29 29 N 1.40306 * 107.99271 * 359.95823 * 27 26 25 30 30 C 1.30129 * 108.12760 * 359.96491 * 29 27 26 31 31 C 1.48106 * 104.31310 * 320.21599 * 17 16 14 32 32 H 1.08995 * 109.46773 * 301.82790 * 1 2 3 33 33 H 1.09004 * 109.46702 * 61.82736 * 1 2 3 34 34 H 1.09000 * 109.46928 * 181.82514 * 1 2 3 35 35 H 1.09002 * 110.06925 * 222.65507 * 3 2 1 36 36 H 1.09004 * 110.06699 * 344.18043 * 3 2 1 37 37 H 0.96994 * 120.00062 * 180.02562 * 8 7 5 38 38 H 1.08994 * 110.06944 * 209.43032 * 13 4 3 39 39 H 1.09001 * 110.11315 * 87.92762 * 13 4 3 40 40 H 1.08999 * 110.38240 * 30.46673 * 16 14 13 41 41 H 1.08997 * 110.38494 * 152.72884 * 16 14 13 42 42 H 1.09004 * 109.42374 * 290.40804 * 22 20 18 43 43 H 1.09001 * 109.42607 * 50.23716 * 22 20 18 44 44 H 1.08998 * 109.43376 * 168.19653 * 23 22 20 45 45 H 1.09005 * 109.43123 * 48.34858 * 23 22 20 46 46 H 1.08998 * 109.71558 * 290.86143 * 24 23 22 47 47 H 1.08995 * 109.71819 * 170.21414 * 24 23 22 48 48 H 1.07996 * 126.18865 * 0.32143 * 26 25 24 49 49 H 1.09010 * 110.39032 * 280.97568 * 31 17 16 50 50 H 1.09000 * 110.39272 * 158.59602 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1077 1.4250 0.0000 4 7 2.5676 1.6872 1.3735 5 6 2.5904 2.8986 2.0118 6 1 2.2461 3.7851 1.5000 7 6 3.0559 2.9869 3.3165 8 7 3.4760 1.9066 3.9400 9 14 3.0863 4.6393 4.1873 10 1 1.7074 5.1855 4.2607 11 1 3.6241 4.4652 5.5605 12 1 3.9522 5.5807 3.4328 13 6 2.9991 0.3931 1.9266 14 6 2.1156 -0.6779 1.2658 15 1 1.3366 -1.0377 1.9379 16 6 3.0143 -1.8106 0.7264 17 7 3.3759 -1.3831 -0.6447 18 6 4.5671 -1.5079 -1.2627 19 8 5.5236 -1.9391 -0.6543 20 6 4.7106 -1.1118 -2.7096 21 1 3.9855 -0.3348 -2.9517 22 6 6.1310 -0.5931 -2.9656 23 6 6.3545 -0.4183 -4.4693 24 6 6.4647 -1.7937 -5.1395 25 6 5.2863 -2.6273 -4.7006 26 6 4.8095 -3.7565 -5.2563 27 7 3.7386 -4.1493 -4.5305 28 1 3.1925 -4.9332 -4.6985 29 7 3.5562 -3.2241 -3.4916 30 6 4.4817 -2.3149 -3.5920 31 6 2.1310 -0.7878 -1.1829 32 1 -0.3633 0.5419 0.8731 33 1 -0.3633 0.4852 -0.9060 34 1 -0.3633 -1.0271 0.0327 35 1 2.9461 1.4888 -0.6937 36 1 1.3353 2.1417 -0.2791 37 1 3.8009 1.9683 4.8518 38 1 2.8558 0.3817 3.0071 39 1 4.0471 0.2136 1.6867 40 1 3.9087 -1.9109 1.3412 41 1 2.4647 -2.7515 0.7003 42 1 6.2621 0.3667 -2.4658 43 1 6.8543 -1.3074 -2.5722 44 1 7.2748 0.1413 -4.6366 45 1 5.5153 0.1284 -4.8995 46 1 7.3921 -2.2782 -4.8342 47 1 6.4494 -1.6770 -6.2231 48 1 5.2103 -4.2583 -6.1245 49 1 1.4445 -1.5706 -1.5058 50 1 2.3583 -0.1158 -2.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091674538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:39 Heat of formation + Delta-G solvation = 45.120941 kcal Electronic energy + Delta-G solvation = -31779.721143 eV Core-core repulsion = 27807.861095 eV Total energy + Delta-G solvation = -3971.860049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56625 -41.53440 -39.81314 -37.21366 -36.56487 -34.36290 -33.40555 -32.44088 -31.78808 -31.38525 -29.68610 -27.90148 -27.43596 -26.69657 -25.55096 -24.16644 -22.75370 -22.44078 -21.86175 -20.51555 -20.01712 -19.55488 -18.82120 -18.51297 -18.01099 -17.08356 -16.84168 -16.55468 -16.16342 -15.58622 -15.47649 -15.38201 -15.11375 -14.97403 -14.78125 -14.43249 -14.13117 -13.86843 -13.66723 -13.54083 -13.46508 -13.37435 -13.19483 -13.04086 -12.85516 -12.71168 -12.60053 -12.42011 -12.32826 -12.04896 -11.81427 -11.79609 -11.65571 -11.57840 -11.46196 -11.41351 -11.14093 -10.89249 -10.77509 -10.33217 -9.71339 -9.32077 -8.91969 -7.73840 -5.23022 0.95188 1.45450 1.46800 1.49371 1.55683 1.68598 1.98624 2.08422 2.49325 3.29078 3.31471 3.46955 3.50564 3.66637 3.74706 3.90082 3.96490 3.99603 4.09793 4.21016 4.30727 4.34345 4.38978 4.42199 4.48692 4.56233 4.63535 4.69698 4.77059 4.77576 4.81070 4.85316 4.89189 4.96098 5.01605 5.07182 5.13992 5.19822 5.22146 5.26651 5.32632 5.36604 5.45496 5.47252 5.52732 5.61238 5.65635 5.82671 6.34879 6.50364 6.56309 6.70228 7.08336 7.09457 7.77655 8.46070 9.24588 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.003164 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.504293 B = 8846.456776 C = 9548.897037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C 0.142 3.858 4 N -0.616 5.616 5 C -0.234 4.234 6 H 0.085 0.915 7 C -0.071 4.071 8 N -0.950 5.950 9 Si 0.983 3.017 10 H -0.272 1.272 11 H -0.296 1.296 12 H -0.280 1.280 13 C 0.154 3.846 14 C -0.107 4.107 15 H 0.099 0.901 16 C 0.119 3.881 17 N -0.609 5.609 18 C 0.539 3.461 19 O -0.591 6.591 20 C -0.015 4.015 21 H 0.116 0.884 22 C -0.104 4.104 23 C -0.109 4.109 24 C -0.038 4.038 25 C -0.252 4.252 26 C 0.078 3.922 27 N -0.474 5.474 28 H 0.453 0.547 29 N -0.313 5.313 30 C 0.075 3.925 31 C 0.125 3.875 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.007 0.993 36 H 0.053 0.947 37 H 0.246 0.754 38 H 0.086 0.914 39 H -0.036 1.036 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.223 0.777 49 H 0.097 0.903 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 -11.611 -24.117 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C 0.016 3.984 4 N -0.340 5.340 5 C -0.363 4.363 6 H 0.103 0.897 7 C -0.262 4.262 8 N -0.600 5.600 9 Si 0.811 3.189 10 H -0.198 1.198 11 H -0.222 1.222 12 H -0.207 1.207 13 C 0.028 3.972 14 C -0.128 4.128 15 H 0.117 0.883 16 C -0.004 4.004 17 N -0.340 5.340 18 C 0.329 3.671 19 O -0.471 6.471 20 C -0.038 4.038 21 H 0.133 0.867 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.076 4.076 25 C -0.263 4.263 26 C -0.068 4.068 27 N -0.185 5.185 28 H 0.299 0.701 29 N -0.136 5.136 30 C -0.093 4.093 31 C 0.003 3.997 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.104 0.896 39 H -0.019 1.019 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.239 0.761 49 H 0.115 0.885 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.450 -12.125 -23.009 26.124 hybrid contribution 0.858 0.655 0.893 1.401 sum -1.592 -11.469 -22.116 24.964 Atomic orbital electron populations 1.21540 0.90412 1.02779 1.02322 1.22309 0.97369 0.94607 0.93790 1.21593 0.95587 0.94955 0.86270 1.44777 1.73928 1.04281 1.10980 1.19464 1.35361 0.85993 0.95503 0.89703 1.25666 1.01577 1.01005 0.97995 1.69912 1.49911 1.27932 1.12242 0.85083 0.78079 0.78743 0.77007 1.19756 1.22226 1.20653 1.21617 0.91422 0.83473 1.00701 1.23075 0.97600 0.95098 0.97000 0.88304 1.22252 0.97949 0.97348 0.82897 1.48879 1.10688 1.58939 1.15493 1.20482 0.80510 0.76996 0.89134 1.90642 1.39076 1.49152 1.68254 1.19792 1.01696 0.94709 0.87575 0.86656 1.21501 0.92617 1.00855 0.99242 1.21556 1.03432 0.97847 0.91835 1.20067 0.93644 0.92813 1.01030 1.20446 1.04385 1.01355 1.00102 1.22723 0.89509 0.95868 0.98705 1.46385 1.26054 1.23647 1.22380 0.70073 1.76992 1.23924 1.02884 1.09848 1.21668 0.95151 0.95665 0.96833 1.22521 0.84542 0.97003 0.95637 0.93619 0.90486 0.90506 0.97484 0.92881 0.94438 0.89595 1.01852 0.93296 0.89118 0.91676 0.92229 0.89265 0.90785 0.91119 0.88235 0.76063 0.88468 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.91 8.61 71.98 0.62 -2.29 16 2 C -0.08 -2.57 1.08 -50.77 -0.05 -2.63 16 3 C 0.14 5.83 6.37 86.50 0.55 6.38 16 4 N -0.62 -32.64 3.39 -695.47 -2.36 -35.00 16 5 C -0.23 -13.39 10.34 84.03 0.87 -12.53 16 6 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 7 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 8 N -0.95 -58.82 10.08 21.65 0.22 -58.60 16 9 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C 0.15 8.07 5.70 86.50 0.49 8.56 16 14 C -0.11 -4.17 3.73 -9.38 -0.03 -4.21 16 15 H 0.10 3.59 7.90 -2.39 -0.02 3.57 16 16 C 0.12 4.39 6.34 86.52 0.55 4.94 16 17 N -0.61 -21.59 3.31 -808.44 -2.68 -24.26 16 18 C 0.54 20.52 6.88 87.66 0.60 21.13 16 19 O -0.59 -27.62 16.28 -3.04 -0.05 -27.67 16 20 C -0.01 -0.43 2.62 -12.08 -0.03 -0.46 16 21 H 0.12 2.98 6.41 -2.39 -0.02 2.96 16 22 C -0.10 -2.74 4.97 30.73 0.15 -2.58 16 23 C -0.11 -1.88 5.87 30.73 0.18 -1.70 16 24 C -0.04 -0.55 6.28 30.03 0.19 -0.36 16 25 C -0.25 -4.89 5.89 -20.10 -0.12 -5.01 16 26 C 0.08 1.05 11.95 83.33 1.00 2.05 16 27 N -0.47 -7.86 7.37 -57.88 -0.43 -8.29 16 28 H 0.45 4.31 8.96 -213.18 -1.91 2.40 16 29 N -0.31 -8.15 12.58 -47.13 -0.59 -8.75 16 30 C 0.07 1.96 6.42 43.44 0.28 2.24 16 31 C 0.13 3.54 5.76 86.52 0.50 4.03 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.01 0.31 7.45 -2.39 -0.02 0.30 16 36 H 0.05 2.05 7.83 -2.38 -0.02 2.03 16 37 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.09 5.14 5.44 -2.39 -0.01 5.12 16 39 H -0.04 -2.19 7.45 -2.39 -0.02 -2.21 16 40 H 0.05 2.14 7.36 -2.39 -0.02 2.12 16 41 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.06 1.83 7.48 -2.39 -0.02 1.81 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.17 8.10 -2.38 -0.02 1.15 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.22 0.72 8.06 -2.91 -0.02 0.69 16 49 H 0.10 2.29 7.99 -2.38 -0.02 2.27 16 50 H 0.09 2.24 6.03 -2.39 -0.01 2.22 16 Total: -1.00 -83.24 385.90 1.39 -81.84 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.95 Total: 18.05 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.20 Total: 13.93 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -5.84 Total: -134.90 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -83.24 1.39 -81.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091674538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.965 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds