Wall clock time and date at job start Wed Apr 1 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28447 * 125.19138 * 2 1 4 4 C 1.30867 * 110.92329 * 180.27931 * 3 2 1 5 5 C 1.50704 * 126.06800 * 179.67901 * 4 3 2 6 6 C 1.52994 * 117.49765 * 163.66646 * 5 4 3 7 7 C 1.52998 * 117.49527 * 95.04314 * 5 4 3 8 8 C 1.39675 * 107.86577 * 359.71742 * 4 3 2 9 9 C 1.36602 * 125.18842 * 179.78883 * 2 1 3 10 10 C 1.47157 * 126.88357 * 0.02562 * 9 2 1 11 11 O 1.21628 * 120.00117 * 350.99159 * 10 9 2 12 12 N 1.34782 * 120.00360 * 170.99741 * 10 9 2 13 13 C 1.48248 * 126.41192 * 356.53108 * 12 10 9 14 14 C 1.53736 * 105.90420 * 211.09016 * 13 12 10 15 15 H 1.08999 * 112.28234 * 104.65026 * 14 13 12 16 16 C 1.54442 * 109.01825 * 229.74788 * 14 13 12 17 17 N 1.48337 * 104.32699 * 137.92693 * 16 14 13 18 18 C 1.36931 * 128.19981 * 138.19630 * 17 16 14 19 19 H 1.08001 * 119.99982 * 202.27794 * 18 17 16 20 20 C 1.38814 * 120.00352 * 22.27702 * 18 17 16 21 21 N 1.31619 * 119.99867 * 193.13645 * 20 18 17 22 22 Si 1.86803 * 119.99831 * 13.13401 * 20 18 17 23 23 H 1.48501 * 109.47071 * 273.38909 * 22 20 18 24 24 H 1.48494 * 109.47121 * 153.38678 * 22 20 18 25 25 H 1.48504 * 109.47067 * 33.38760 * 22 20 18 26 26 C 1.48333 * 103.60004 * 318.45322 * 17 16 14 27 27 C 1.54027 * 104.53209 * 41.50826 * 26 17 16 28 28 C 1.53003 * 112.11919 * 97.20118 * 27 26 17 29 29 C 1.47193 * 126.70824 * 176.84466 * 12 10 9 30 30 H 1.09002 * 109.46742 * 265.40352 * 1 2 3 31 31 H 1.09004 * 109.46968 * 25.39849 * 1 2 3 32 32 H 1.08994 * 109.47607 * 145.39866 * 1 2 3 33 33 H 1.08994 * 115.54802 * 309.37204 * 5 4 3 34 34 H 1.09002 * 117.50230 * 359.97438 * 6 5 4 35 35 H 1.09004 * 117.50254 * 145.02198 * 6 5 4 36 36 H 1.09002 * 117.49699 * 214.98102 * 7 5 4 37 37 H 1.08994 * 117.50309 * 359.97438 * 7 5 4 38 38 H 1.07992 * 127.32222 * 180.02562 * 8 4 3 39 39 H 1.09002 * 110.07141 * 92.14619 * 13 12 10 40 40 H 1.09001 * 110.56346 * 330.29909 * 13 12 10 41 41 H 1.09001 * 110.46557 * 19.21582 * 16 14 13 42 42 H 1.09001 * 110.46432 * 256.63790 * 16 14 13 43 43 H 0.96997 * 120.00750 * 5.12292 * 21 20 18 44 44 H 1.09001 * 110.46083 * 160.26099 * 26 17 16 45 45 H 1.09005 * 110.46255 * 282.83570 * 26 17 16 46 46 H 1.08996 * 109.47548 * 302.41832 * 28 27 26 47 47 H 1.09007 * 109.47244 * 62.42030 * 28 27 26 48 48 H 1.09008 * 109.46858 * 182.41708 * 28 27 26 49 49 H 1.09006 * 110.06364 * 29.38131 * 29 12 10 50 50 H 1.09004 * 110.06049 * 267.87266 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 -0.0060 5 6 4.6336 1.6891 -0.0147 6 6 6.0107 1.1385 0.3610 7 6 5.2608 2.0517 1.3329 8 6 3.5612 -0.6668 -0.0037 9 6 2.2522 -1.1164 0.0041 10 6 1.7992 -2.5165 0.0087 11 8 0.6221 -2.7743 0.1741 12 7 2.6887 -3.5132 -0.1702 13 6 4.1357 -3.3609 -0.4539 14 6 4.5264 -4.5740 -1.3138 15 1 4.6604 -4.3109 -2.3630 16 6 5.7851 -5.2344 -0.7099 17 7 5.5135 -6.6901 -0.7970 18 6 6.3733 -7.6917 -1.1610 19 1 5.9846 -8.6307 -1.5266 20 6 7.7444 -7.5003 -1.0603 21 7 8.5711 -8.3433 -1.6419 22 14 8.4163 -6.0461 -0.0993 23 1 8.4938 -4.8588 -0.9879 24 1 9.7725 -6.3731 0.4094 25 1 7.5166 -5.7504 1.0445 26 6 4.0880 -6.8031 -0.4024 27 6 3.3975 -5.6190 -1.1048 28 6 2.7369 -6.0353 -2.4206 29 6 2.4111 -4.9582 -0.1282 30 1 -0.3633 -0.0824 1.0244 31 1 -0.3633 0.9284 -0.4408 32 1 -0.3634 -0.8458 -0.5835 33 1 4.5932 2.4673 -0.7767 34 1 6.0776 0.0805 0.6150 35 1 6.8768 1.5544 -0.1539 36 1 5.6333 3.0684 1.4573 37 1 4.8341 1.5949 2.2258 38 1 4.4594 -1.2664 -0.0068 39 1 4.7020 -3.3648 0.4775 40 1 4.3233 -2.4378 -1.0022 41 1 5.9128 -4.9321 0.3295 42 1 6.6685 -4.9761 -1.2940 43 1 8.2236 -9.0549 -2.2021 44 1 3.6700 -7.7476 -0.7506 45 1 3.9839 -6.7149 0.6791 46 1 3.4852 -6.4757 -3.0795 47 1 1.9546 -6.7672 -2.2187 48 1 2.3001 -5.1596 -2.9008 49 1 1.3859 -5.1514 -0.4441 50 1 2.5705 -5.3404 0.8801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091713209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:08 Heat of formation + Delta-G solvation = 118.527007 kcal Electronic energy + Delta-G solvation = -31261.315904 eV Core-core repulsion = 27292.638982 eV Total energy + Delta-G solvation = -3968.676923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.79122 -40.40440 -38.52729 -37.41289 -35.39209 -33.36877 -32.85024 -31.71873 -30.89083 -30.22313 -27.50287 -26.87437 -25.86051 -25.72078 -23.72164 -22.93879 -22.50972 -21.62199 -21.08057 -20.39945 -19.24923 -18.71404 -17.41564 -17.13440 -16.72979 -16.48888 -16.05065 -15.69695 -15.17013 -15.00268 -14.63491 -14.59270 -14.23944 -13.89763 -13.62587 -13.36717 -13.12147 -13.06042 -12.89910 -12.76436 -12.51827 -12.27195 -12.14888 -11.88871 -11.71807 -11.41244 -11.33900 -11.20710 -11.01447 -10.86234 -10.68638 -10.56568 -10.47201 -10.29870 -10.15582 -9.95788 -9.55666 -9.29255 -9.15362 -9.02100 -8.86281 -8.72229 -7.13276 -6.38909 -3.36411 1.09141 2.10696 2.27958 2.91685 3.03539 3.33059 3.45960 3.60260 3.62161 4.05921 4.20123 4.54025 4.56884 4.57563 4.67389 4.71228 4.76173 4.92708 4.96403 5.01138 5.08504 5.15638 5.20897 5.25339 5.29981 5.33718 5.35528 5.42673 5.44747 5.54613 5.66828 5.69795 5.70813 5.78991 5.89114 5.90645 5.92298 5.99101 6.01921 6.16619 6.26225 6.31540 6.36588 6.39695 6.51157 6.57640 6.60914 6.66588 7.34157 7.57689 7.81441 7.96781 8.25134 8.93603 9.45144 10.21880 11.10373 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.003638 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.617275 B = 7694.415669 C = 9717.312209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.259 5.259 3 N -0.272 5.272 4 C 0.054 3.946 5 C -0.074 4.074 6 C -0.166 4.166 7 C -0.167 4.167 8 C -0.190 4.190 9 C -0.029 4.029 10 C 0.605 3.395 11 O -0.549 6.549 12 N -0.597 5.597 13 C 0.090 3.910 14 C -0.108 4.108 15 H 0.092 0.908 16 C 0.106 3.894 17 N -0.602 5.602 18 C -0.316 4.316 19 H 0.075 0.925 20 C -0.016 4.016 21 N -0.926 5.926 22 Si 1.060 2.940 23 H -0.293 1.293 24 H -0.298 1.298 25 H -0.283 1.283 26 C 0.137 3.863 27 C -0.085 4.085 28 C -0.121 4.121 29 C 0.121 3.879 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.172 0.828 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.263 0.737 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.080 0.920 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 18.690 3.074 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.046 5.046 3 N -0.105 5.105 4 C -0.102 4.102 5 C -0.094 4.094 6 C -0.203 4.203 7 C -0.205 4.205 8 C -0.219 4.219 9 C -0.157 4.157 10 C 0.393 3.607 11 O -0.428 6.428 12 N -0.329 5.329 13 C -0.033 4.033 14 C -0.129 4.129 15 H 0.110 0.890 16 C -0.020 4.020 17 N -0.327 5.327 18 C -0.443 4.443 19 H 0.093 0.907 20 C -0.216 4.216 21 N -0.566 5.566 22 Si 0.892 3.108 23 H -0.221 1.221 24 H -0.226 1.226 25 H -0.209 1.209 26 C 0.010 3.990 27 C -0.088 4.088 28 C -0.178 4.178 29 C -0.001 4.001 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.189 0.811 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.099 0.901 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.141 20.052 3.680 23.729 hybrid contribution -0.967 -1.350 -0.565 1.754 sum -13.108 18.703 3.115 23.050 Atomic orbital electron populations 1.22258 0.72419 1.05297 1.04873 1.45530 1.07763 1.01556 1.49768 1.73081 1.03720 1.13245 1.20449 1.21028 0.90831 0.92665 1.05666 1.20020 0.89591 0.99570 1.00220 1.23038 0.93917 1.00405 1.02942 1.22986 1.03354 1.00761 0.93390 1.22610 0.96289 0.94773 1.08194 1.21278 0.91276 0.89513 1.13647 1.16441 0.84579 0.82409 0.77244 1.90782 1.16127 1.84189 1.51691 1.48461 1.09389 1.06295 1.68745 1.23029 0.80063 1.00084 1.00101 1.23096 0.96999 0.93020 0.99825 0.89002 1.22430 0.95546 0.86088 0.97976 1.45383 1.07738 1.00990 1.78594 1.20104 0.87900 0.95046 1.41234 0.90741 1.26095 0.91667 1.03255 1.00614 1.70873 1.36044 1.18130 1.31555 0.83867 0.75483 0.74781 0.76679 1.22111 1.22611 1.20893 1.21818 0.86441 0.95159 0.95594 1.22288 0.94056 0.96756 0.95693 1.21596 1.00075 1.00402 0.95725 1.22243 1.00127 0.77956 0.99782 0.89656 0.88812 0.87789 0.86404 0.88155 0.87878 0.88297 0.88735 0.81099 0.90260 0.89163 0.94167 0.91313 0.92672 0.92546 0.95033 0.91509 0.92743 0.93336 0.90124 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.59 59.85 0.63 1.50 16 2 N -0.26 -3.28 3.75 -63.88 -0.24 -3.52 16 3 N -0.27 -3.54 11.90 33.64 0.40 -3.14 16 4 C 0.05 0.65 6.85 -82.46 -0.57 0.08 16 5 C -0.07 -0.69 6.33 -91.77 -0.58 -1.27 16 6 C -0.17 -1.30 10.02 -26.73 -0.27 -1.57 16 7 C -0.17 -1.34 10.23 -26.73 -0.27 -1.62 16 8 C -0.19 -2.28 8.54 -38.98 -0.33 -2.62 16 9 C -0.03 -0.39 6.89 -82.06 -0.57 -0.95 16 10 C 0.61 8.78 7.84 -12.64 -0.10 8.68 16 11 O -0.55 -8.90 15.17 5.25 0.08 -8.82 16 12 N -0.60 -8.21 3.34 -172.16 -0.58 -8.79 16 13 C 0.09 1.14 5.02 -2.70 -0.01 1.13 16 14 C -0.11 -1.66 3.71 -88.29 -0.33 -1.99 16 15 H 0.09 1.39 7.93 -51.93 -0.41 0.97 16 16 C 0.11 2.03 4.20 -2.27 -0.01 2.02 16 17 N -0.60 -13.61 3.16 -168.74 -0.53 -14.14 16 18 C -0.32 -8.56 10.68 -15.06 -0.16 -8.72 16 19 H 0.07 2.16 8.06 -52.49 -0.42 1.73 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.13 13.70 55.49 0.76 -27.37 16 22 Si 1.06 25.14 24.90 -169.99 -4.23 20.90 16 23 H -0.29 -6.43 6.50 56.52 0.37 -6.06 16 24 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.26 6.10 56.52 0.34 -5.91 16 26 C 0.14 2.50 6.36 -2.50 -0.02 2.49 16 27 C -0.09 -1.29 1.07 -152.40 -0.16 -1.46 16 28 C -0.12 -1.71 8.59 37.16 0.32 -1.39 16 29 C 0.12 1.68 6.25 -3.28 -0.02 1.66 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.02 6.82 -51.93 -0.35 0.67 16 33 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.81 7.22 -51.93 -0.37 0.43 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.17 1.77 4.55 -52.49 -0.24 1.53 16 39 H 0.08 0.97 7.06 -51.93 -0.37 0.60 16 40 H 0.09 1.01 5.26 -51.93 -0.27 0.74 16 41 H 0.04 0.76 5.81 -51.93 -0.30 0.46 16 42 H 0.07 1.42 5.11 -51.93 -0.27 1.15 16 43 H 0.26 7.92 8.73 -40.82 -0.36 7.56 16 44 H 0.06 1.04 7.90 -51.93 -0.41 0.63 16 45 H 0.03 0.57 7.16 -51.93 -0.37 0.19 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 49 H 0.08 1.11 7.60 -51.93 -0.39 0.71 16 50 H 0.08 1.03 7.11 -51.93 -0.37 0.66 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -32.67 383.91 -8.70 -41.37 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.60 Total: 2.30 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.54 Total: -4.59 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.19 Total: -56.95 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -4.23 Total: 20.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.67 -8.70 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091713209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.895 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds