Wall clock time and date at job start Wed Apr 1 2020 03:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28447 * 125.19138 * 2 1 4 4 C 1.30867 * 110.92329 * 180.27931 * 3 2 1 5 5 C 1.50704 * 126.06800 * 179.67901 * 4 3 2 6 6 C 1.52994 * 117.49765 * 163.66646 * 5 4 3 7 7 C 1.52998 * 117.49527 * 95.04314 * 5 4 3 8 8 C 1.39675 * 107.86577 * 359.71742 * 4 3 2 9 9 C 1.36602 * 125.18842 * 179.78883 * 2 1 3 10 10 C 1.47157 * 126.88357 * 0.02562 * 9 2 1 11 11 O 1.21628 * 120.00117 * 350.99159 * 10 9 2 12 12 N 1.34782 * 120.00360 * 170.99741 * 10 9 2 13 13 C 1.48248 * 126.41192 * 356.53108 * 12 10 9 14 14 C 1.53736 * 105.90420 * 211.09016 * 13 12 10 15 15 H 1.08999 * 112.28234 * 104.65026 * 14 13 12 16 16 C 1.54442 * 109.01825 * 229.74788 * 14 13 12 17 17 N 1.48337 * 104.32699 * 137.92693 * 16 14 13 18 18 C 1.36931 * 128.19981 * 138.19630 * 17 16 14 19 19 H 1.08001 * 119.99982 * 202.27794 * 18 17 16 20 20 C 1.38814 * 120.00352 * 22.27702 * 18 17 16 21 21 N 1.31619 * 119.99867 * 193.13645 * 20 18 17 22 22 Si 1.86803 * 119.99831 * 13.13401 * 20 18 17 23 23 H 1.48501 * 109.47071 * 273.38909 * 22 20 18 24 24 H 1.48494 * 109.47121 * 153.38678 * 22 20 18 25 25 H 1.48504 * 109.47067 * 33.38760 * 22 20 18 26 26 C 1.48333 * 103.60004 * 318.45322 * 17 16 14 27 27 C 1.54027 * 104.53209 * 41.50826 * 26 17 16 28 28 C 1.53003 * 112.11919 * 97.20118 * 27 26 17 29 29 C 1.47193 * 126.70824 * 176.84466 * 12 10 9 30 30 H 1.09002 * 109.46742 * 265.40352 * 1 2 3 31 31 H 1.09004 * 109.46968 * 25.39849 * 1 2 3 32 32 H 1.08994 * 109.47607 * 145.39866 * 1 2 3 33 33 H 1.08994 * 115.54802 * 309.37204 * 5 4 3 34 34 H 1.09002 * 117.50230 * 359.97438 * 6 5 4 35 35 H 1.09004 * 117.50254 * 145.02198 * 6 5 4 36 36 H 1.09002 * 117.49699 * 214.98102 * 7 5 4 37 37 H 1.08994 * 117.50309 * 359.97438 * 7 5 4 38 38 H 1.07992 * 127.32222 * 180.02562 * 8 4 3 39 39 H 1.09002 * 110.07141 * 92.14619 * 13 12 10 40 40 H 1.09001 * 110.56346 * 330.29909 * 13 12 10 41 41 H 1.09001 * 110.46557 * 19.21582 * 16 14 13 42 42 H 1.09001 * 110.46432 * 256.63790 * 16 14 13 43 43 H 0.96997 * 120.00750 * 5.12292 * 21 20 18 44 44 H 1.09001 * 110.46083 * 160.26099 * 26 17 16 45 45 H 1.09005 * 110.46255 * 282.83570 * 26 17 16 46 46 H 1.08996 * 109.47548 * 302.41832 * 28 27 26 47 47 H 1.09007 * 109.47244 * 62.42030 * 28 27 26 48 48 H 1.09008 * 109.46858 * 182.41708 * 28 27 26 49 49 H 1.09006 * 110.06364 * 29.38131 * 29 12 10 50 50 H 1.09004 * 110.06049 * 267.87266 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 -0.0060 5 6 4.6336 1.6891 -0.0147 6 6 6.0107 1.1385 0.3610 7 6 5.2608 2.0517 1.3329 8 6 3.5612 -0.6668 -0.0037 9 6 2.2522 -1.1164 0.0041 10 6 1.7992 -2.5165 0.0087 11 8 0.6221 -2.7743 0.1741 12 7 2.6887 -3.5132 -0.1702 13 6 4.1357 -3.3609 -0.4539 14 6 4.5264 -4.5740 -1.3138 15 1 4.6604 -4.3109 -2.3630 16 6 5.7851 -5.2344 -0.7099 17 7 5.5135 -6.6901 -0.7970 18 6 6.3733 -7.6917 -1.1610 19 1 5.9846 -8.6307 -1.5266 20 6 7.7444 -7.5003 -1.0603 21 7 8.5711 -8.3433 -1.6419 22 14 8.4163 -6.0461 -0.0993 23 1 8.4938 -4.8588 -0.9879 24 1 9.7725 -6.3731 0.4094 25 1 7.5166 -5.7504 1.0445 26 6 4.0880 -6.8031 -0.4024 27 6 3.3975 -5.6190 -1.1048 28 6 2.7369 -6.0353 -2.4206 29 6 2.4111 -4.9582 -0.1282 30 1 -0.3633 -0.0824 1.0244 31 1 -0.3633 0.9284 -0.4408 32 1 -0.3634 -0.8458 -0.5835 33 1 4.5932 2.4673 -0.7767 34 1 6.0776 0.0805 0.6150 35 1 6.8768 1.5544 -0.1539 36 1 5.6333 3.0684 1.4573 37 1 4.8341 1.5949 2.2258 38 1 4.4594 -1.2664 -0.0068 39 1 4.7020 -3.3648 0.4775 40 1 4.3233 -2.4378 -1.0022 41 1 5.9128 -4.9321 0.3295 42 1 6.6685 -4.9761 -1.2940 43 1 8.2236 -9.0549 -2.2021 44 1 3.6700 -7.7476 -0.7506 45 1 3.9839 -6.7149 0.6791 46 1 3.4852 -6.4757 -3.0795 47 1 1.9546 -6.7672 -2.2187 48 1 2.3001 -5.1596 -2.9008 49 1 1.3859 -5.1514 -0.4441 50 1 2.5705 -5.3404 0.8801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091713209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:07 Heat of formation + Delta-G solvation = 98.156781 kcal Electronic energy + Delta-G solvation = -31262.199224 eV Core-core repulsion = 27292.638982 eV Total energy + Delta-G solvation = -3969.560242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.68829 -41.61228 -39.73531 -38.07557 -36.80802 -34.78476 -33.91339 -33.24649 -31.95315 -31.65994 -28.30888 -28.09838 -27.38206 -27.05982 -24.75053 -23.92010 -23.25221 -22.69210 -22.55416 -21.50277 -20.46670 -19.72204 -19.31961 -18.19116 -17.71703 -17.46446 -17.12212 -16.72306 -16.36439 -16.10895 -15.99652 -15.74544 -15.26494 -15.17288 -14.91526 -14.78126 -14.58384 -14.16941 -13.83877 -13.78771 -13.60238 -13.44416 -13.16131 -12.96225 -12.90894 -12.66295 -12.62772 -12.26498 -12.11087 -12.08489 -11.94430 -11.64744 -11.59229 -11.47576 -11.30166 -11.22884 -11.12443 -11.10449 -10.79758 -10.25613 -9.91393 -9.74388 -9.05700 -8.60078 -5.49134 0.12020 1.21275 1.41816 1.44812 1.59652 1.76559 1.93684 2.00467 2.61074 2.95344 3.05892 3.13869 3.25843 3.39103 3.47644 3.69976 3.81187 3.89222 4.04017 4.05831 4.13663 4.14917 4.19501 4.23534 4.27233 4.34773 4.38879 4.47615 4.56728 4.59087 4.64305 4.70357 4.73996 4.77567 4.82004 4.87903 4.89169 4.94021 5.08021 5.09794 5.12693 5.21142 5.24630 5.27589 5.35224 5.37576 5.42261 5.62885 5.65711 6.12908 6.26230 6.80341 6.82316 7.00676 7.43098 8.21690 8.90991 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.003638 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.617275 B = 7694.415669 C = 9717.312209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.265 5.265 3 N -0.287 5.287 4 C 0.048 3.952 5 C -0.090 4.090 6 C -0.157 4.157 7 C -0.164 4.164 8 C -0.186 4.186 9 C -0.047 4.047 10 C 0.607 3.393 11 O -0.571 6.571 12 N -0.596 5.596 13 C 0.096 3.904 14 C -0.101 4.101 15 H 0.096 0.904 16 C 0.101 3.899 17 N -0.627 5.627 18 C -0.300 4.300 19 H 0.037 0.963 20 C -0.075 4.075 21 N -0.966 5.966 22 Si 1.100 2.900 23 H -0.263 1.263 24 H -0.313 1.313 25 H -0.255 1.255 26 C 0.135 3.865 27 C -0.077 4.077 28 C -0.116 4.116 29 C 0.127 3.873 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.188 0.812 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.247 0.753 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 21.870 4.050 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.052 5.052 3 N -0.121 5.121 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.194 4.194 7 C -0.202 4.202 8 C -0.215 4.215 9 C -0.176 4.176 10 C 0.396 3.604 11 O -0.451 6.451 12 N -0.327 5.327 13 C -0.026 4.026 14 C -0.122 4.122 15 H 0.114 0.886 16 C -0.024 4.024 17 N -0.353 5.353 18 C -0.429 4.429 19 H 0.055 0.945 20 C -0.268 4.268 21 N -0.610 5.610 22 Si 0.925 3.075 23 H -0.189 1.189 24 H -0.242 1.242 25 H -0.180 1.180 26 C 0.009 3.991 27 C -0.079 4.079 28 C -0.173 4.173 29 C 0.005 3.995 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.205 0.795 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.102 0.898 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.848 23.264 4.655 26.981 hybrid contribution -0.894 -2.387 -0.888 2.699 sum -13.742 20.877 3.767 25.276 Atomic orbital electron populations 1.22423 0.71214 1.06133 1.05434 1.45814 1.08625 1.01289 1.49503 1.73081 1.04428 1.13591 1.20979 1.21480 0.91130 0.93262 1.04845 1.20143 0.89554 0.99880 1.01341 1.23145 0.93511 1.00496 1.02286 1.23037 1.02954 1.01738 0.92471 1.22832 0.96288 0.94996 1.07364 1.21265 0.92078 0.89161 1.15053 1.16555 0.84244 0.82854 0.76763 1.90771 1.17046 1.84563 1.52755 1.48407 1.09700 1.06014 1.68584 1.23048 0.79541 0.99519 1.00515 1.22986 0.94972 0.93823 1.00378 0.88570 1.22577 0.96890 0.84068 0.98855 1.45412 1.08820 1.01890 1.79163 1.19920 0.88765 0.94979 1.39194 0.94464 1.27394 0.92467 1.05495 1.01466 1.70988 1.36755 1.19427 1.33824 0.83413 0.74429 0.72979 0.76686 1.18913 1.24240 1.17986 1.21979 0.84312 0.96272 0.96529 1.22153 0.94280 0.95447 0.96046 1.21542 0.99698 1.01166 0.94880 1.22130 0.99724 0.78123 0.99539 0.88970 0.86788 0.88400 0.85733 0.88130 0.86281 0.86729 0.89674 0.79485 0.88842 0.87097 0.92603 0.92550 0.94419 0.93593 0.93776 0.93795 0.91572 0.91969 0.89801 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 10.59 127.77 1.35 2.86 16 2 N -0.26 -6.20 3.75 -356.02 -1.33 -7.54 16 3 N -0.29 -6.91 11.90 -47.49 -0.57 -7.48 16 4 C 0.05 1.04 6.85 43.05 0.30 1.33 16 5 C -0.09 -1.42 6.33 -11.54 -0.07 -1.50 16 6 C -0.16 -1.93 10.02 30.59 0.31 -1.63 16 7 C -0.16 -2.18 10.23 30.59 0.31 -1.87 16 8 C -0.19 -3.91 8.54 22.66 0.19 -3.71 16 9 C -0.05 -1.15 6.89 40.79 0.28 -0.87 16 10 C 0.61 16.08 7.84 86.58 0.68 16.76 16 11 O -0.57 -17.45 15.17 -4.12 -0.06 -17.52 16 12 N -0.60 -14.47 3.34 -816.85 -2.73 -17.20 16 13 C 0.10 2.06 5.02 86.29 0.43 2.49 16 14 C -0.10 -2.79 3.71 -9.29 -0.03 -2.82 16 15 H 0.10 2.62 7.93 -2.39 -0.02 2.60 16 16 C 0.10 3.61 4.20 86.52 0.36 3.97 16 17 N -0.63 -27.83 3.16 -687.76 -2.18 -30.01 16 18 C -0.30 -16.65 10.68 84.03 0.90 -15.75 16 19 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 20 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.97 -60.86 13.70 21.65 0.30 -60.57 16 22 Si 1.10 49.82 24.90 68.60 1.71 51.53 16 23 H -0.26 -10.55 6.50 99.48 0.65 -9.91 16 24 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16 25 H -0.26 -10.27 6.10 99.48 0.61 -9.67 16 26 C 0.13 4.77 6.36 86.37 0.55 5.31 16 27 C -0.08 -2.15 1.07 -50.82 -0.05 -2.21 16 28 C -0.12 -3.09 8.59 71.98 0.62 -2.47 16 29 C 0.13 3.16 6.25 86.50 0.54 3.70 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.10 1.81 6.82 -2.39 -0.02 1.80 16 33 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 1.24 7.22 -2.39 -0.02 1.22 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.19 3.11 4.55 -2.91 -0.01 3.10 16 39 H 0.09 1.83 7.06 -2.39 -0.02 1.81 16 40 H 0.11 1.99 5.26 -2.39 -0.01 1.98 16 41 H 0.06 1.86 5.81 -2.39 -0.01 1.84 16 42 H 0.06 2.17 5.11 -2.39 -0.01 2.15 16 43 H 0.25 15.71 8.73 -92.71 -0.81 14.90 16 44 H 0.05 1.69 7.90 -2.39 -0.02 1.67 16 45 H 0.04 1.48 7.16 -2.38 -0.02 1.46 16 46 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 49 H 0.08 2.08 7.60 -2.38 -0.02 2.06 16 50 H 0.08 1.96 7.11 -2.38 -0.02 1.94 16 Total: -1.00 -72.57 383.91 3.03 -69.54 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.76 Total: 19.49 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 7.13 Total: -0.26 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.51 Total: -122.78 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.06 Total: -17.52 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.71 Total: 51.53 kcal Total: -72.57 3.03 -69.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091713209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.699 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds