Wall clock time and date at job start Wed Apr 1 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.54450 * 112.30023 * 2 1 4 4 N 1.48331 * 104.32187 * 97.55146 * 3 2 1 5 5 C 1.36941 * 128.20068 * 221.80516 * 4 3 2 6 6 H 1.07997 * 119.99884 * 19.71661 * 5 4 3 7 7 C 1.38817 * 120.00011 * 199.71586 * 5 4 3 8 8 N 1.31620 * 119.99804 * 21.01690 * 7 5 4 9 9 Si 1.86794 * 119.99667 * 201.02398 * 7 5 4 10 10 H 1.48506 * 109.47103 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47616 * 59.99711 * 9 7 5 12 12 H 1.48507 * 109.47135 * 299.99699 * 9 7 5 13 13 C 1.48338 * 103.60375 * 42.07090 * 4 3 2 14 14 C 1.54880 * 104.11153 * 317.89349 * 13 4 3 15 15 H 1.08995 * 112.91503 * 262.97293 * 14 13 4 16 16 C 1.53742 * 108.85829 * 137.56253 * 14 13 4 17 17 N 1.47198 * 106.42854 * 229.56946 * 16 14 13 18 18 C 1.34777 * 126.70346 * 211.40731 * 17 16 14 19 19 O 1.21283 * 119.99661 * 175.02369 * 18 17 16 20 20 C 1.50699 * 119.99908 * 355.02124 * 18 17 16 21 21 H 1.08995 * 109.58288 * 334.92683 * 20 18 17 22 22 C 1.53268 * 109.58032 * 95.34209 * 20 18 17 23 23 C 1.53104 * 109.51468 * 170.14532 * 22 20 18 24 24 C 1.53393 * 109.26031 * 290.54725 * 23 22 20 25 25 C 1.51047 * 108.21411 * 48.79884 * 24 23 22 26 26 N 1.30087 * 127.39124 * 164.01788 * 25 24 23 27 27 C 1.34287 * 109.21187 * 180.09080 * 26 25 24 28 28 C 1.34857 * 108.07261 * 359.97438 * 27 26 25 29 29 N 1.35417 * 123.98063 * 344.05891 * 25 24 23 30 30 C 1.47194 * 106.59578 * 31.37187 * 17 16 14 31 31 H 1.09006 * 109.47130 * 61.00943 * 1 2 3 32 32 H 1.08999 * 109.47090 * 181.01345 * 1 2 3 33 33 H 1.09003 * 109.46676 * 301.01438 * 1 2 3 34 34 H 1.09002 * 110.46129 * 338.84802 * 3 2 1 35 35 H 1.08996 * 110.57471 * 216.31741 * 3 2 1 36 36 H 0.96993 * 120.00327 * 5.84248 * 8 7 5 37 37 H 1.08997 * 110.46041 * 76.63763 * 13 4 3 38 38 H 1.08998 * 110.46289 * 199.22309 * 13 4 3 39 39 H 1.08999 * 110.06671 * 110.33359 * 16 14 13 40 40 H 1.08993 * 110.06757 * 348.80767 * 16 14 13 41 41 H 1.09000 * 109.46752 * 290.17347 * 22 20 18 42 42 H 1.08999 * 109.46537 * 50.16335 * 22 20 18 43 43 H 1.09003 * 109.51218 * 170.59980 * 23 22 20 44 44 H 1.08998 * 109.52151 * 50.50062 * 23 22 20 45 45 H 1.08999 * 109.71690 * 289.11225 * 24 23 22 46 46 H 1.09003 * 109.74484 * 168.49751 * 24 23 22 47 47 H 1.08001 * 125.96513 * 179.97438 * 27 26 25 48 48 H 1.07996 * 126.65834 * 179.97438 * 28 27 26 49 49 H 1.08995 * 110.06715 * 209.39298 * 30 17 16 50 50 H 1.08999 * 110.11277 * 87.89236 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1162 1.4290 0.0000 4 7 2.4301 1.6968 1.4247 5 6 2.2223 2.8486 2.1357 6 1 1.5112 3.5805 1.7821 7 6 2.9255 3.0753 3.3109 8 7 4.0526 2.4345 3.5374 9 14 2.2718 4.2895 4.5709 10 1 3.2001 4.3495 5.7286 11 1 0.9315 3.8490 5.0341 12 1 2.1641 5.6352 3.9520 13 6 3.0287 0.4238 1.8954 14 6 2.1337 -0.6708 1.2632 15 1 1.3672 -1.0385 1.9453 16 6 3.0309 -1.8002 0.7311 17 7 2.5949 -2.0625 -0.6502 18 6 2.6295 -3.2455 -1.2949 19 8 2.1545 -3.3444 -2.4065 20 6 3.2582 -4.4454 -0.6347 21 1 3.9918 -4.1151 0.1007 22 6 2.1733 -5.2788 0.0563 23 6 2.7673 -6.6140 0.5128 24 6 3.0828 -7.4744 -0.7173 25 6 3.8505 -6.6255 -1.7029 26 7 4.5457 -7.0339 -2.7238 27 6 5.0767 -5.9714 -3.3503 28 6 4.6928 -4.8607 -2.6888 29 7 3.9167 -5.2741 -1.6472 30 6 2.1130 -0.7804 -1.1895 31 1 -0.3634 0.4981 -0.8989 32 1 -0.3633 -1.0275 0.0182 33 1 -0.3633 0.5295 0.8808 34 1 1.3795 2.1429 -0.3685 35 1 3.0222 1.4714 -0.6044 36 1 4.4358 1.8689 2.8488 37 1 4.0553 0.3315 1.5409 38 1 2.9934 0.3653 2.9832 39 1 2.9049 -2.6959 1.3393 40 1 4.0742 -1.4849 0.7403 41 1 1.7935 -4.7353 0.9214 42 1 1.3578 -5.4646 -0.6427 43 1 2.0491 -7.1343 1.1465 44 1 3.6835 -6.4321 1.0746 45 1 2.1546 -7.8187 -1.1732 46 1 3.6873 -8.3320 -0.4216 47 1 5.7020 -6.0012 -4.2303 48 1 4.9504 -3.8415 -2.9361 49 1 1.3392 -0.9562 -1.9367 50 1 2.9403 -0.2252 -1.6317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091737801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:44 Heat of formation + Delta-G solvation = 59.660208 kcal Electronic energy + Delta-G solvation = -31404.821392 eV Core-core repulsion = 27433.591813 eV Total energy + Delta-G solvation = -3971.229579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.58465 -40.57968 -38.81334 -36.65319 -35.41662 -33.54309 -33.04033 -31.13401 -30.31521 -29.90515 -28.88279 -26.97403 -25.90046 -25.48948 -24.62128 -22.69014 -22.58298 -21.58898 -20.68657 -19.74786 -19.23410 -18.79900 -17.68405 -17.43515 -17.06002 -15.91386 -15.84350 -15.22886 -14.83814 -14.70893 -14.63736 -14.47348 -14.21696 -13.96328 -13.85457 -13.72047 -13.59309 -13.18380 -12.99078 -12.88998 -12.50006 -12.44746 -12.17151 -11.89508 -11.80180 -11.54554 -11.49233 -11.43484 -11.06244 -10.79994 -10.65681 -10.50652 -10.36968 -10.25341 -10.19663 -10.08112 -10.02834 -9.64418 -9.47527 -8.84844 -8.64791 -8.42085 -7.13574 -6.22300 -3.31225 1.85321 2.05267 2.52788 2.87972 3.05628 3.41897 3.44280 3.62504 3.90857 4.05215 4.14036 4.20871 4.43400 4.45498 4.56252 4.60070 4.76231 4.86539 4.95124 4.96939 5.13264 5.22532 5.27185 5.28037 5.31796 5.33374 5.35581 5.42072 5.45627 5.47120 5.67297 5.69057 5.70962 5.73207 5.77377 5.87356 5.96855 6.04113 6.15695 6.16718 6.32422 6.38359 6.48814 6.62221 6.65168 6.74254 6.82996 6.98734 7.30641 7.57657 7.81000 7.99106 8.30844 8.84022 9.65437 10.26481 11.13235 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.002611 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.531512 B =10722.043534 C =11000.565573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 C 0.136 3.864 4 N -0.596 5.596 5 C -0.325 4.325 6 H 0.067 0.933 7 C -0.027 4.027 8 N -0.924 5.924 9 Si 1.070 2.930 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.292 1.292 13 C 0.142 3.858 14 C -0.109 4.109 15 H 0.089 0.911 16 C 0.100 3.900 17 N -0.607 5.607 18 C 0.523 3.477 19 O -0.525 6.525 20 C 0.122 3.878 21 H 0.111 0.889 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.034 4.034 25 C 0.208 3.792 26 N -0.487 5.487 27 C -0.035 4.035 28 C -0.033 4.033 29 N -0.439 5.439 30 C 0.117 3.883 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.267 0.733 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.170 0.830 48 H 0.169 0.831 49 H 0.078 0.922 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -16.067 -5.536 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C 0.009 3.991 4 N -0.320 5.320 5 C -0.453 4.453 6 H 0.084 0.916 7 C -0.228 4.228 8 N -0.565 5.565 9 Si 0.900 3.100 10 H -0.210 1.210 11 H -0.220 1.220 12 H -0.219 1.219 13 C 0.015 3.985 14 C -0.130 4.130 15 H 0.107 0.893 16 C -0.023 4.023 17 N -0.340 5.340 18 C 0.308 3.692 19 O -0.401 6.401 20 C 0.015 3.985 21 H 0.129 0.871 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.073 4.073 25 C -0.055 4.055 26 N -0.206 5.206 27 C -0.182 4.182 28 C -0.166 4.166 29 N -0.123 5.123 30 C -0.006 4.006 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.187 0.813 48 H 0.186 0.814 49 H 0.096 0.904 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.682 -16.098 -4.738 16.994 hybrid contribution -0.181 0.539 -1.500 1.604 sum -2.862 -15.560 -6.238 17.006 Atomic orbital electron populations 1.21582 0.93095 1.00827 1.02218 1.22362 0.95977 0.97330 0.93046 1.21869 0.96814 0.91972 0.88399 1.45151 1.72808 1.09576 1.04508 1.19784 1.20941 0.97003 1.07575 0.91556 1.25856 0.94632 1.02501 0.99806 1.70797 1.16053 1.31783 1.37906 0.83432 0.75306 0.74961 0.76324 1.20959 1.22010 1.21944 1.21930 0.93017 0.84394 0.99119 1.23196 0.98016 0.94883 0.96861 0.89313 1.22448 0.99493 0.99175 0.81189 1.48618 1.62230 1.07957 1.15208 1.19929 0.80462 0.82754 0.86011 1.90766 1.46159 1.83690 1.19447 1.21477 0.96813 0.90491 0.89750 0.87137 1.21875 0.96784 0.96288 1.01365 1.21679 1.02251 0.94678 0.97443 1.20211 0.99192 0.96346 0.91526 1.23275 1.02628 0.80960 0.98589 1.70035 1.12862 1.31096 1.06610 1.22265 1.05761 0.87637 1.02507 1.22504 1.00763 1.01017 0.92319 1.44990 1.37561 1.07187 1.22575 1.22267 0.99128 0.82463 0.96719 0.92808 0.93432 0.91536 0.92849 0.95630 0.92110 0.95411 0.91019 0.90897 0.90488 0.88549 0.89714 0.89217 0.90670 0.89198 0.88507 0.81274 0.81388 0.90388 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 8.61 37.16 0.32 -1.37 16 2 C -0.08 -1.29 1.08 -152.17 -0.16 -1.45 16 3 C 0.14 2.56 6.37 -2.27 -0.01 2.55 16 4 N -0.60 -13.78 3.25 -168.21 -0.55 -14.33 16 5 C -0.33 -8.60 10.26 -15.06 -0.15 -8.75 16 6 H 0.07 1.75 7.91 -52.49 -0.42 1.34 16 7 C -0.03 -0.73 5.20 -17.43 -0.09 -0.82 16 8 N -0.92 -26.39 12.68 55.49 0.70 -25.69 16 9 Si 1.07 24.13 29.97 -169.99 -5.09 19.03 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 13 C 0.14 2.86 4.62 -2.04 -0.01 2.85 16 14 C -0.11 -1.66 3.77 -88.06 -0.33 -1.99 16 15 H 0.09 1.32 7.94 -51.93 -0.41 0.91 16 16 C 0.10 1.22 5.96 -3.27 -0.02 1.20 16 17 N -0.61 -7.90 3.32 -171.66 -0.57 -8.47 16 18 C 0.52 7.02 6.53 -10.99 -0.07 6.95 16 19 O -0.53 -8.96 16.44 5.55 0.09 -8.87 16 20 C 0.12 1.30 2.82 -68.96 -0.19 1.10 16 21 H 0.11 1.01 7.08 -51.93 -0.37 0.64 16 22 C -0.13 -1.02 5.23 -26.54 -0.14 -1.16 16 23 C -0.12 -0.78 5.96 -26.47 -0.16 -0.94 16 24 C -0.03 -0.28 6.33 -27.51 -0.17 -0.45 16 25 C 0.21 2.59 7.65 -155.25 -1.19 1.40 16 26 N -0.49 -7.01 11.24 -10.62 -0.12 -7.13 16 27 C -0.03 -0.46 11.87 -17.68 -0.21 -0.67 16 28 C -0.03 -0.43 10.49 -16.76 -0.18 -0.61 16 29 N -0.44 -5.48 2.81 -107.91 -0.30 -5.79 16 30 C 0.12 1.64 6.24 -3.27 -0.02 1.62 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.05 1.00 7.91 -51.93 -0.41 0.59 16 35 H 0.03 0.49 7.17 -51.93 -0.37 0.12 16 36 H 0.27 7.56 6.10 -40.82 -0.25 7.31 16 37 H 0.03 0.57 6.82 -51.93 -0.35 0.22 16 38 H 0.07 1.63 7.12 -51.93 -0.37 1.27 16 39 H 0.07 0.69 7.20 -51.93 -0.37 0.31 16 40 H 0.08 0.96 7.10 -51.93 -0.37 0.59 16 41 H 0.10 0.64 7.99 -51.93 -0.41 0.22 16 42 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 48 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 49 H 0.08 1.12 7.56 -51.93 -0.39 0.73 16 50 H 0.07 1.03 7.11 -51.93 -0.37 0.66 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -33.46 386.22 -10.70 -44.17 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.89 Total: 1.80 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.80 Total: -0.54 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.83 Total: -61.41 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.09 Total: 19.03 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.46 -10.70 -44.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091737801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.826 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds