Wall clock time and date at job start Wed Apr 1 2020 03:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.54450 * 112.30023 * 2 1 4 4 N 1.48331 * 104.32187 * 97.55146 * 3 2 1 5 5 C 1.36941 * 128.20068 * 221.80516 * 4 3 2 6 6 H 1.07997 * 119.99884 * 19.71661 * 5 4 3 7 7 C 1.38817 * 120.00011 * 199.71586 * 5 4 3 8 8 N 1.31620 * 119.99804 * 21.01690 * 7 5 4 9 9 Si 1.86794 * 119.99667 * 201.02398 * 7 5 4 10 10 H 1.48506 * 109.47103 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47616 * 59.99711 * 9 7 5 12 12 H 1.48507 * 109.47135 * 299.99699 * 9 7 5 13 13 C 1.48338 * 103.60375 * 42.07090 * 4 3 2 14 14 C 1.54880 * 104.11153 * 317.89349 * 13 4 3 15 15 H 1.08995 * 112.91503 * 262.97293 * 14 13 4 16 16 C 1.53742 * 108.85829 * 137.56253 * 14 13 4 17 17 N 1.47198 * 106.42854 * 229.56946 * 16 14 13 18 18 C 1.34777 * 126.70346 * 211.40731 * 17 16 14 19 19 O 1.21283 * 119.99661 * 175.02369 * 18 17 16 20 20 C 1.50699 * 119.99908 * 355.02124 * 18 17 16 21 21 H 1.08995 * 109.58288 * 334.92683 * 20 18 17 22 22 C 1.53268 * 109.58032 * 95.34209 * 20 18 17 23 23 C 1.53104 * 109.51468 * 170.14532 * 22 20 18 24 24 C 1.53393 * 109.26031 * 290.54725 * 23 22 20 25 25 C 1.51047 * 108.21411 * 48.79884 * 24 23 22 26 26 N 1.30087 * 127.39124 * 164.01788 * 25 24 23 27 27 C 1.34287 * 109.21187 * 180.09080 * 26 25 24 28 28 C 1.34857 * 108.07261 * 359.97438 * 27 26 25 29 29 N 1.35417 * 123.98063 * 344.05891 * 25 24 23 30 30 C 1.47194 * 106.59578 * 31.37187 * 17 16 14 31 31 H 1.09006 * 109.47130 * 61.00943 * 1 2 3 32 32 H 1.08999 * 109.47090 * 181.01345 * 1 2 3 33 33 H 1.09003 * 109.46676 * 301.01438 * 1 2 3 34 34 H 1.09002 * 110.46129 * 338.84802 * 3 2 1 35 35 H 1.08996 * 110.57471 * 216.31741 * 3 2 1 36 36 H 0.96993 * 120.00327 * 5.84248 * 8 7 5 37 37 H 1.08997 * 110.46041 * 76.63763 * 13 4 3 38 38 H 1.08998 * 110.46289 * 199.22309 * 13 4 3 39 39 H 1.08999 * 110.06671 * 110.33359 * 16 14 13 40 40 H 1.08993 * 110.06757 * 348.80767 * 16 14 13 41 41 H 1.09000 * 109.46752 * 290.17347 * 22 20 18 42 42 H 1.08999 * 109.46537 * 50.16335 * 22 20 18 43 43 H 1.09003 * 109.51218 * 170.59980 * 23 22 20 44 44 H 1.08998 * 109.52151 * 50.50062 * 23 22 20 45 45 H 1.08999 * 109.71690 * 289.11225 * 24 23 22 46 46 H 1.09003 * 109.74484 * 168.49751 * 24 23 22 47 47 H 1.08001 * 125.96513 * 179.97438 * 27 26 25 48 48 H 1.07996 * 126.65834 * 179.97438 * 28 27 26 49 49 H 1.08995 * 110.06715 * 209.39298 * 30 17 16 50 50 H 1.08999 * 110.11277 * 87.89236 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1162 1.4290 0.0000 4 7 2.4301 1.6968 1.4247 5 6 2.2223 2.8486 2.1357 6 1 1.5112 3.5805 1.7821 7 6 2.9255 3.0753 3.3109 8 7 4.0526 2.4345 3.5374 9 14 2.2718 4.2895 4.5709 10 1 3.2001 4.3495 5.7286 11 1 0.9315 3.8490 5.0341 12 1 2.1641 5.6352 3.9520 13 6 3.0287 0.4238 1.8954 14 6 2.1337 -0.6708 1.2632 15 1 1.3672 -1.0385 1.9453 16 6 3.0309 -1.8002 0.7311 17 7 2.5949 -2.0625 -0.6502 18 6 2.6295 -3.2455 -1.2949 19 8 2.1545 -3.3444 -2.4065 20 6 3.2582 -4.4454 -0.6347 21 1 3.9918 -4.1151 0.1007 22 6 2.1733 -5.2788 0.0563 23 6 2.7673 -6.6140 0.5128 24 6 3.0828 -7.4744 -0.7173 25 6 3.8505 -6.6255 -1.7029 26 7 4.5457 -7.0339 -2.7238 27 6 5.0767 -5.9714 -3.3503 28 6 4.6928 -4.8607 -2.6888 29 7 3.9167 -5.2741 -1.6472 30 6 2.1130 -0.7804 -1.1895 31 1 -0.3634 0.4981 -0.8989 32 1 -0.3633 -1.0275 0.0182 33 1 -0.3633 0.5295 0.8808 34 1 1.3795 2.1429 -0.3685 35 1 3.0222 1.4714 -0.6044 36 1 4.4358 1.8689 2.8488 37 1 4.0553 0.3315 1.5409 38 1 2.9934 0.3653 2.9832 39 1 2.9049 -2.6959 1.3393 40 1 4.0742 -1.4849 0.7403 41 1 1.7935 -4.7353 0.9214 42 1 1.3578 -5.4646 -0.6427 43 1 2.0491 -7.1343 1.1465 44 1 3.6835 -6.4321 1.0746 45 1 2.1546 -7.8187 -1.1732 46 1 3.6873 -8.3320 -0.4216 47 1 5.7020 -6.0012 -4.2303 48 1 4.9504 -3.8415 -2.9361 49 1 1.3392 -0.9562 -1.9367 50 1 2.9403 -0.2252 -1.6317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091737801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:43 Heat of formation + Delta-G solvation = 40.234625 kcal Electronic energy + Delta-G solvation = -31405.663748 eV Core-core repulsion = 27433.591813 eV Total energy + Delta-G solvation = -3972.071935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.48703 -41.76569 -40.03681 -37.41509 -36.90911 -34.72086 -34.24376 -32.60136 -31.61917 -30.97067 -29.76703 -28.09339 -27.46140 -26.87595 -25.65691 -24.05867 -23.28185 -22.54097 -22.27712 -20.83280 -20.22214 -19.88439 -19.36615 -18.56416 -18.07416 -17.02880 -16.89758 -16.25912 -16.10023 -15.86117 -15.67499 -15.57803 -15.46066 -15.33674 -15.09531 -14.74711 -14.63895 -14.42387 -14.25257 -13.81885 -13.71179 -13.55405 -13.18387 -13.11744 -12.91489 -12.56253 -12.53513 -12.39708 -12.37899 -12.10513 -12.01304 -11.91596 -11.76055 -11.65673 -11.59490 -11.46011 -11.29022 -11.01305 -10.61529 -10.57922 -9.94571 -9.35575 -9.04666 -8.31313 -5.35933 0.89821 1.08303 1.55578 1.59902 1.66543 1.84944 1.92541 2.09924 2.63636 2.96319 3.21960 3.30159 3.31810 3.40591 3.43806 3.56435 3.73391 3.76510 3.81064 4.02296 4.04920 4.09934 4.10296 4.18217 4.35414 4.38643 4.48609 4.51869 4.58046 4.59724 4.64707 4.70097 4.75791 4.78694 4.82405 4.87394 4.93761 4.95933 5.03026 5.05659 5.10916 5.20372 5.20885 5.25647 5.27708 5.36392 5.65177 5.71742 6.11070 6.26227 6.30760 6.76026 6.85096 7.05222 7.66659 8.33921 9.04860 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.002611 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.531512 B =10722.043534 C =11000.565573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 C 0.134 3.866 4 N -0.623 5.623 5 C -0.330 4.330 6 H 0.060 0.940 7 C -0.078 4.078 8 N -0.953 5.953 9 Si 1.117 2.883 10 H -0.292 1.292 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.148 3.852 14 C -0.097 4.097 15 H 0.100 0.900 16 C 0.106 3.894 17 N -0.602 5.602 18 C 0.526 3.474 19 O -0.564 6.564 20 C 0.122 3.878 21 H 0.132 0.868 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.037 4.037 25 C 0.205 3.795 26 N -0.523 5.523 27 C -0.049 4.049 28 C -0.051 4.051 29 N -0.444 5.444 30 C 0.122 3.878 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.023 0.977 36 H 0.257 0.743 37 H 0.020 0.980 38 H 0.040 0.960 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.185 0.815 48 H 0.173 0.827 49 H 0.078 0.922 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -17.732 -4.574 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C 0.008 3.992 4 N -0.348 5.348 5 C -0.459 4.459 6 H 0.078 0.922 7 C -0.274 4.274 8 N -0.597 5.597 9 Si 0.942 3.058 10 H -0.218 1.218 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.022 3.978 14 C -0.117 4.117 15 H 0.118 0.882 16 C -0.016 4.016 17 N -0.334 5.334 18 C 0.314 3.686 19 O -0.443 6.443 20 C 0.015 3.985 21 H 0.150 0.850 22 C -0.161 4.161 23 C -0.151 4.151 24 C -0.076 4.076 25 C -0.058 4.058 26 N -0.242 5.242 27 C -0.195 4.195 28 C -0.184 4.184 29 N -0.128 5.128 30 C -0.001 4.001 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.137 0.863 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.128 0.872 47 H 0.202 0.798 48 H 0.190 0.810 49 H 0.097 0.903 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.903 -17.773 -3.796 18.589 hybrid contribution 0.203 1.083 -1.914 2.209 sum -3.700 -16.691 -5.711 18.024 Atomic orbital electron populations 1.21528 0.91822 1.01825 1.01927 1.22209 0.96796 0.94933 0.93656 1.22002 0.96719 0.94285 0.86191 1.45400 1.73130 1.09833 1.06447 1.20016 1.19983 0.97987 1.07870 0.92248 1.27110 0.94487 1.03925 1.01853 1.70894 1.17459 1.33426 1.37883 0.82801 0.75090 0.73845 0.74057 1.21833 1.20444 1.20484 1.21854 0.93521 0.85012 0.97442 1.23035 0.97721 0.94353 0.96635 0.88187 1.22416 0.98496 0.99691 0.81026 1.48562 1.61923 1.07547 1.15417 1.20398 0.79592 0.83169 0.85437 1.90754 1.47937 1.84294 1.21283 1.21721 0.97900 0.89498 0.89349 0.85044 1.21979 0.95456 0.97173 1.01528 1.21694 1.03326 0.93388 0.96677 1.20466 0.99051 0.96543 0.91490 1.24117 1.01783 0.81417 0.98478 1.70038 1.14351 1.31903 1.07938 1.22637 1.06052 0.87695 1.03126 1.22682 1.01412 1.01235 0.93030 1.45153 1.37424 1.07510 1.22748 1.22099 0.98993 0.82975 0.96047 0.91821 0.91656 0.93212 0.93277 0.95922 0.93267 0.96263 0.94166 0.86844 0.90572 0.86147 0.91146 0.86263 0.89841 0.88583 0.87217 0.79831 0.81006 0.90326 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.98 8.61 71.98 0.62 -2.36 16 2 C -0.07 -2.14 1.08 -50.66 -0.05 -2.19 16 3 C 0.13 5.03 6.37 86.52 0.55 5.58 16 4 N -0.62 -29.20 3.25 -686.08 -2.23 -31.43 16 5 C -0.33 -17.71 10.26 84.03 0.86 -16.85 16 6 H 0.06 3.18 7.91 -2.91 -0.02 3.16 16 7 C -0.08 -4.29 5.20 84.86 0.44 -3.85 16 8 N -0.95 -55.65 12.68 21.65 0.27 -55.38 16 9 Si 1.12 48.95 29.97 68.60 2.06 51.01 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 12 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.15 5.99 4.62 86.67 0.40 6.39 16 14 C -0.10 -2.78 3.77 -9.13 -0.03 -2.81 16 15 H 0.10 2.71 7.94 -2.39 -0.02 2.69 16 16 C 0.11 2.27 5.96 86.50 0.52 2.78 16 17 N -0.60 -14.20 3.32 -815.39 -2.71 -16.91 16 18 C 0.53 13.00 6.53 87.66 0.57 13.58 16 19 O -0.56 -18.63 16.44 -3.04 -0.05 -18.68 16 20 C 0.12 2.24 2.82 44.34 0.12 2.37 16 21 H 0.13 1.88 7.08 -2.39 -0.02 1.86 16 22 C -0.12 -1.54 5.23 30.72 0.16 -1.38 16 23 C -0.11 -0.96 5.96 30.76 0.18 -0.77 16 24 C -0.04 -0.50 6.33 30.09 0.19 -0.31 16 25 C 0.20 4.79 7.65 138.24 1.06 5.85 16 26 N -0.52 -14.76 11.24 -187.51 -2.11 -16.87 16 27 C -0.05 -1.28 11.87 83.54 0.99 -0.29 16 28 C -0.05 -1.30 10.49 83.22 0.87 -0.42 16 29 N -0.44 -10.40 2.81 -495.33 -1.39 -11.79 16 30 C 0.12 3.23 6.24 86.50 0.54 3.77 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.85 7.91 -2.39 -0.02 1.83 16 35 H 0.02 0.87 7.17 -2.39 -0.02 0.86 16 36 H 0.26 14.99 6.10 -92.71 -0.57 14.43 16 37 H 0.02 0.81 6.82 -2.39 -0.02 0.80 16 38 H 0.04 1.87 7.12 -2.39 -0.02 1.85 16 39 H 0.11 1.58 7.20 -2.39 -0.02 1.56 16 40 H 0.08 1.72 7.10 -2.39 -0.02 1.70 16 41 H 0.12 0.95 7.99 -2.39 -0.02 0.94 16 42 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 43 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.08 0.63 8.12 -2.39 -0.02 0.61 16 45 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16 48 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 49 H 0.08 2.12 7.56 -2.39 -0.02 2.11 16 50 H 0.07 1.88 7.11 -2.39 -0.02 1.86 16 Total: -1.00 -75.30 386.22 2.98 -72.32 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.14 Total: 18.65 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 7.99 Total: 9.08 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -8.16 Total: -132.38 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.06 Total: 51.01 kcal Total: -75.30 2.98 -72.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091737801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.559 kcal (2) G-P(sol) polarization free energy of solvation -75.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds