Wall clock time and date at job start Wed Apr 1 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53781 * 111.85849 * 2 1 4 4 N 1.47216 * 106.37793 * 104.05028 * 3 2 1 5 5 C 1.36936 * 126.70021 * 211.24127 * 4 3 2 6 6 H 1.08008 * 119.99882 * 160.28173 * 5 4 3 7 7 C 1.38804 * 120.00548 * 340.27803 * 5 4 3 8 8 N 1.31618 * 120.00428 * 160.99384 * 7 5 4 9 9 Si 1.86807 * 119.99580 * 340.99654 * 7 5 4 10 10 H 1.48498 * 109.47290 * 85.73527 * 9 7 5 11 11 H 1.48507 * 109.47020 * 205.73216 * 9 7 5 12 12 H 1.48494 * 109.46978 * 325.73335 * 9 7 5 13 13 C 1.47216 * 106.59716 * 31.26855 * 4 3 2 14 14 C 1.53707 * 106.41867 * 328.70850 * 13 4 3 15 15 H 1.09004 * 112.61668 * 256.46774 * 14 13 4 16 16 C 1.53773 * 109.38773 * 131.42238 * 14 13 4 17 17 N 1.47216 * 106.42892 * 266.12078 * 16 14 13 18 18 C 1.34780 * 126.70355 * 148.65809 * 17 16 14 19 19 O 1.21280 * 119.99955 * 175.03269 * 18 17 16 20 20 C 1.50698 * 119.99751 * 355.02966 * 18 17 16 21 21 H 1.09001 * 109.58400 * 25.70834 * 20 18 17 22 22 C 1.53263 * 109.58605 * 265.42711 * 20 18 17 23 23 C 1.53194 * 109.47678 * 190.00419 * 22 20 18 24 24 C 1.53402 * 109.36460 * 69.28284 * 23 22 20 25 25 C 1.51037 * 108.20274 * 311.19438 * 24 23 22 26 26 N 1.30093 * 127.38693 * 196.04702 * 25 24 23 27 27 C 1.34293 * 109.20959 * 179.89906 * 26 25 24 28 28 C 1.34852 * 108.07161 * 0.02562 * 27 26 25 29 29 N 1.35421 * 123.98622 * 15.98064 * 25 24 23 30 30 C 1.47210 * 106.59333 * 328.69567 * 17 16 14 31 31 H 1.09003 * 109.46614 * 182.04151 * 1 2 3 32 32 H 1.08994 * 109.47230 * 302.04182 * 1 2 3 33 33 H 1.08999 * 109.47307 * 62.04503 * 1 2 3 34 34 H 1.09001 * 110.07681 * 223.27812 * 3 2 1 35 35 H 1.09000 * 110.07738 * 344.76678 * 3 2 1 36 36 H 0.96999 * 119.99993 * 180.02562 * 8 7 5 37 37 H 1.09001 * 110.07008 * 87.95651 * 13 4 3 38 38 H 1.08996 * 110.07890 * 209.50211 * 13 4 3 39 39 H 1.09007 * 110.07551 * 146.86313 * 16 14 13 40 40 H 1.09006 * 110.07457 * 25.38073 * 16 14 13 41 41 H 1.08997 * 109.46481 * 309.87261 * 22 20 18 42 42 H 1.08996 * 109.46322 * 69.85343 * 22 20 18 43 43 H 1.09000 * 109.41234 * 309.33470 * 23 22 20 44 44 H 1.09007 * 109.52019 * 189.29586 * 23 22 20 45 45 H 1.09002 * 109.71246 * 191.51485 * 24 23 22 46 46 H 1.08995 * 109.71602 * 70.87607 * 24 23 22 47 47 H 1.07999 * 125.96159 * 180.02562 * 27 26 25 48 48 H 1.08008 * 126.65288 * 180.02562 * 28 27 26 49 49 H 1.09005 * 110.07865 * 150.49667 * 30 17 16 50 50 H 1.09000 * 110.07853 * 271.98488 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 2.5753 1.6848 1.3702 5 6 2.6011 2.8935 2.0133 6 1 2.6607 2.9305 3.0911 7 6 2.5509 4.0711 1.2802 8 7 2.2025 5.1969 1.8663 9 14 2.9779 4.0580 -0.5384 10 1 1.7717 3.7007 -1.3275 11 1 3.4542 5.4046 -0.9447 12 1 4.0471 3.0583 -0.7886 13 6 3.0155 0.3894 1.9136 14 6 2.1295 -0.6810 1.2566 15 1 1.3555 -1.0539 1.9275 16 6 3.0154 -1.8163 0.7173 17 7 3.2840 -1.4997 -0.6951 18 6 4.3950 -1.8090 -1.3927 19 8 4.4524 -1.5674 -2.5798 20 6 5.5657 -2.4548 -0.6977 21 1 5.2154 -2.9976 0.1803 22 6 6.5674 -1.3768 -0.2693 23 6 7.8617 -2.0430 0.2082 24 6 8.5787 -2.6784 -0.9899 25 6 7.5719 -3.4976 -1.7621 26 7 7.8156 -4.4105 -2.6564 27 6 6.6529 -4.9078 -3.1084 28 6 5.6497 -4.2750 -2.4668 29 7 6.2306 -3.3829 -1.6156 30 6 2.1026 -0.7785 -1.1963 31 1 -0.3633 -1.0271 0.0366 32 1 -0.3633 0.5452 0.8711 33 1 -0.3634 0.4817 -0.9077 34 1 2.9336 1.4970 -0.7018 35 1 1.3251 2.1423 -0.2690 36 1 2.1671 6.0197 1.3539 37 1 4.0618 0.2146 1.6627 38 1 2.8818 0.3725 2.9952 39 1 2.4909 -2.7688 0.7940 40 1 3.9506 -1.8586 1.2757 41 1 6.7866 -0.7274 -1.1168 42 1 6.1404 -0.7854 0.5405 43 1 7.6233 -2.8142 0.9406 44 1 8.5094 -1.2947 0.6651 45 1 9.3840 -3.3226 -0.6370 46 1 8.9864 -1.8969 -1.6311 47 1 6.5410 -5.6797 -3.8554 48 1 4.5912 -4.4430 -2.6011 49 1 2.3938 -0.0875 -1.9875 50 1 1.3634 -1.4863 -1.5715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091737804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:47 Heat of formation + Delta-G solvation = 63.270110 kcal Electronic energy + Delta-G solvation = -32072.745433 eV Core-core repulsion = 28101.672391 eV Total energy + Delta-G solvation = -3971.073042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.56013 -40.72078 -38.84985 -36.58456 -35.41052 -33.49144 -32.86704 -31.79477 -30.50713 -30.11022 -28.87293 -26.93442 -26.17650 -25.92217 -24.65252 -22.66917 -22.51083 -21.57885 -20.77556 -19.82413 -19.32768 -19.01445 -17.64629 -17.27954 -16.82460 -16.08976 -15.69769 -15.32397 -15.06284 -14.84250 -14.63118 -14.53921 -14.25999 -14.06503 -13.79758 -13.67333 -13.38505 -13.26998 -12.98815 -12.79412 -12.66885 -12.45067 -12.25743 -12.12420 -11.73499 -11.62620 -11.45832 -11.43067 -11.38849 -11.10722 -11.04640 -10.77715 -10.44776 -10.29518 -10.14662 -10.02928 -9.96035 -9.59572 -9.52917 -8.90354 -8.81378 -8.39946 -7.19505 -6.04252 -3.38482 1.87693 2.08799 2.50494 2.90587 3.07562 3.25381 3.41516 3.41918 3.91524 4.13442 4.19648 4.28815 4.40519 4.43004 4.47810 4.52495 4.74475 4.82392 4.90155 5.02530 5.03287 5.04903 5.21364 5.28274 5.31814 5.33610 5.35826 5.41624 5.53368 5.54228 5.57432 5.63119 5.66473 5.71633 5.72364 5.76988 5.81841 6.01014 6.05166 6.18290 6.25194 6.26221 6.34899 6.50776 6.56012 6.59681 6.66754 7.00581 7.27833 7.56246 7.82563 8.01476 8.21227 8.70079 9.56976 10.07261 11.11667 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.003593 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.770940 B = 7790.224331 C = 8439.528222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.084 4.084 3 C 0.119 3.881 4 N -0.600 5.600 5 C -0.243 4.243 6 H 0.094 0.906 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.301 1.301 12 H -0.275 1.275 13 C 0.140 3.860 14 C -0.106 4.106 15 H 0.099 0.901 16 C 0.102 3.898 17 N -0.606 5.606 18 C 0.525 3.475 19 O -0.521 6.521 20 C 0.124 3.876 21 H 0.110 0.890 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.035 4.035 25 C 0.211 3.789 26 N -0.488 5.488 27 C -0.035 4.035 28 C -0.035 4.035 29 N -0.440 5.440 30 C 0.118 3.882 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.264 0.736 37 H 0.022 0.978 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.169 0.831 48 H 0.168 0.832 49 H 0.080 0.920 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -19.169 -1.741 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.086 4.086 3 C -0.007 4.007 4 N -0.325 5.325 5 C -0.369 4.369 6 H 0.112 0.888 7 C -0.174 4.174 8 N -0.552 5.552 9 Si 0.712 3.288 10 H -0.213 1.213 11 H -0.229 1.229 12 H -0.201 1.201 13 C 0.014 3.986 14 C -0.126 4.126 15 H 0.117 0.883 16 C -0.021 4.021 17 N -0.340 5.340 18 C 0.311 3.689 19 O -0.396 6.396 20 C 0.017 3.983 21 H 0.128 0.872 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.074 4.074 25 C -0.051 4.051 26 N -0.207 5.207 27 C -0.182 4.182 28 C -0.168 4.168 29 N -0.124 5.124 30 C -0.005 4.005 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.187 0.813 48 H 0.185 0.815 49 H 0.099 0.901 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.933 -18.918 -2.566 19.718 hybrid contribution -0.846 0.396 -0.928 1.317 sum 4.087 -18.522 -3.493 19.286 Atomic orbital electron populations 1.21640 0.92390 1.01287 1.02881 1.22159 0.96230 0.96992 0.93206 1.21919 0.96912 0.92967 0.88906 1.44767 1.72082 1.04044 1.11590 1.18638 1.46269 0.79997 0.92031 0.88797 1.24992 0.99923 0.94980 0.97478 1.69785 1.49556 0.99404 1.36484 0.87025 0.78974 0.75955 0.86851 1.21289 1.22854 1.20052 1.21390 0.94400 0.85463 0.97330 1.22871 0.97851 0.94942 0.96949 0.88263 1.22318 1.00204 0.98463 0.81073 1.48423 1.16487 1.56361 1.12696 1.19922 0.82197 0.79794 0.86998 1.90778 1.80876 1.53316 1.14588 1.21470 0.92985 0.91913 0.91951 0.87243 1.21918 0.94656 0.96325 1.03669 1.21684 0.95942 1.00818 0.97454 1.20235 0.94650 0.97572 0.94946 1.23300 0.82461 0.99707 0.99668 1.70048 1.28328 1.11008 1.11296 1.22259 0.87595 1.04290 1.04065 1.22460 0.99996 0.96450 0.97892 1.45023 1.07244 1.28719 1.31373 1.22178 0.85976 0.95151 0.97157 0.92796 0.91132 0.92421 0.95506 0.91737 0.92565 0.96069 0.92718 0.91028 0.90252 0.89683 0.88120 0.90788 0.89063 0.88488 0.89113 0.81336 0.81477 0.90146 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 8.50 37.16 0.32 -1.29 16 2 C -0.08 -1.24 1.09 -152.64 -0.17 -1.41 16 3 C 0.12 2.41 3.87 -3.25 -0.01 2.40 16 4 N -0.60 -13.32 3.19 -171.18 -0.55 -13.86 16 5 C -0.24 -6.50 10.67 -15.06 -0.16 -6.66 16 6 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 7 C 0.03 0.71 5.45 -17.43 -0.10 0.61 16 8 N -0.91 -27.25 13.97 55.49 0.78 -26.48 16 9 Si 0.88 22.34 24.37 -169.99 -4.14 18.20 16 10 H -0.29 -6.99 6.47 56.52 0.37 -6.62 16 11 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 12 H -0.27 -6.97 6.39 56.52 0.36 -6.61 16 13 C 0.14 2.36 6.71 -3.28 -0.02 2.34 16 14 C -0.11 -1.36 3.71 -88.80 -0.33 -1.69 16 15 H 0.10 1.11 7.92 -51.93 -0.41 0.70 16 16 C 0.10 1.05 5.92 -3.25 -0.02 1.03 16 17 N -0.61 -7.92 3.32 -171.57 -0.57 -8.49 16 18 C 0.53 7.50 6.54 -10.98 -0.07 7.43 16 19 O -0.52 -9.52 16.47 5.56 0.09 -9.43 16 20 C 0.12 1.40 2.93 -68.96 -0.20 1.20 16 21 H 0.11 0.96 6.71 -51.93 -0.35 0.61 16 22 C -0.13 -1.32 5.25 -26.49 -0.14 -1.46 16 23 C -0.12 -0.95 5.95 -26.42 -0.16 -1.10 16 24 C -0.04 -0.33 6.34 -27.51 -0.17 -0.50 16 25 C 0.21 2.76 7.65 -155.24 -1.19 1.57 16 26 N -0.49 -7.19 11.24 -10.62 -0.12 -7.31 16 27 C -0.04 -0.46 11.87 -17.68 -0.21 -0.67 16 28 C -0.04 -0.45 10.47 -16.76 -0.18 -0.63 16 29 N -0.44 -5.64 2.81 -107.91 -0.30 -5.95 16 30 C 0.12 1.65 5.93 -3.24 -0.02 1.63 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.60 5.29 -51.93 -0.27 0.33 16 35 H 0.06 1.44 5.63 -51.93 -0.29 1.14 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.02 0.35 7.40 -51.93 -0.38 -0.03 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.08 0.69 6.32 -51.93 -0.33 0.36 16 41 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 44 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 48 H 0.17 1.87 8.06 -52.48 -0.42 1.45 16 49 H 0.08 1.31 7.34 -51.93 -0.38 0.93 16 50 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -35.01 380.63 -9.86 -44.87 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.96 Total: -0.08 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.83 Total: 2.79 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.76 Total: -62.09 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.01 -9.86 -44.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091737804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.142 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds