Wall clock time and date at job start Wed Apr 1 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53781 * 111.85849 * 2 1 4 4 N 1.47216 * 106.37793 * 104.05028 * 3 2 1 5 5 C 1.36936 * 126.70021 * 211.24127 * 4 3 2 6 6 H 1.08008 * 119.99882 * 160.28173 * 5 4 3 7 7 C 1.38804 * 120.00548 * 340.27803 * 5 4 3 8 8 N 1.31618 * 120.00428 * 160.99384 * 7 5 4 9 9 Si 1.86807 * 119.99580 * 340.99654 * 7 5 4 10 10 H 1.48498 * 109.47290 * 85.73527 * 9 7 5 11 11 H 1.48507 * 109.47020 * 205.73216 * 9 7 5 12 12 H 1.48494 * 109.46978 * 325.73335 * 9 7 5 13 13 C 1.47216 * 106.59716 * 31.26855 * 4 3 2 14 14 C 1.53707 * 106.41867 * 328.70850 * 13 4 3 15 15 H 1.09004 * 112.61668 * 256.46774 * 14 13 4 16 16 C 1.53773 * 109.38773 * 131.42238 * 14 13 4 17 17 N 1.47216 * 106.42892 * 266.12078 * 16 14 13 18 18 C 1.34780 * 126.70355 * 148.65809 * 17 16 14 19 19 O 1.21280 * 119.99955 * 175.03269 * 18 17 16 20 20 C 1.50698 * 119.99751 * 355.02966 * 18 17 16 21 21 H 1.09001 * 109.58400 * 25.70834 * 20 18 17 22 22 C 1.53263 * 109.58605 * 265.42711 * 20 18 17 23 23 C 1.53194 * 109.47678 * 190.00419 * 22 20 18 24 24 C 1.53402 * 109.36460 * 69.28284 * 23 22 20 25 25 C 1.51037 * 108.20274 * 311.19438 * 24 23 22 26 26 N 1.30093 * 127.38693 * 196.04702 * 25 24 23 27 27 C 1.34293 * 109.20959 * 179.89906 * 26 25 24 28 28 C 1.34852 * 108.07161 * 0.02562 * 27 26 25 29 29 N 1.35421 * 123.98622 * 15.98064 * 25 24 23 30 30 C 1.47210 * 106.59333 * 328.69567 * 17 16 14 31 31 H 1.09003 * 109.46614 * 182.04151 * 1 2 3 32 32 H 1.08994 * 109.47230 * 302.04182 * 1 2 3 33 33 H 1.08999 * 109.47307 * 62.04503 * 1 2 3 34 34 H 1.09001 * 110.07681 * 223.27812 * 3 2 1 35 35 H 1.09000 * 110.07738 * 344.76678 * 3 2 1 36 36 H 0.96999 * 119.99993 * 180.02562 * 8 7 5 37 37 H 1.09001 * 110.07008 * 87.95651 * 13 4 3 38 38 H 1.08996 * 110.07890 * 209.50211 * 13 4 3 39 39 H 1.09007 * 110.07551 * 146.86313 * 16 14 13 40 40 H 1.09006 * 110.07457 * 25.38073 * 16 14 13 41 41 H 1.08997 * 109.46481 * 309.87261 * 22 20 18 42 42 H 1.08996 * 109.46322 * 69.85343 * 22 20 18 43 43 H 1.09000 * 109.41234 * 309.33470 * 23 22 20 44 44 H 1.09007 * 109.52019 * 189.29586 * 23 22 20 45 45 H 1.09002 * 109.71246 * 191.51485 * 24 23 22 46 46 H 1.08995 * 109.71602 * 70.87607 * 24 23 22 47 47 H 1.07999 * 125.96159 * 180.02562 * 27 26 25 48 48 H 1.08008 * 126.65288 * 180.02562 * 28 27 26 49 49 H 1.09005 * 110.07865 * 150.49667 * 30 17 16 50 50 H 1.09000 * 110.07853 * 271.98488 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 2.5753 1.6848 1.3702 5 6 2.6011 2.8935 2.0133 6 1 2.6607 2.9305 3.0911 7 6 2.5509 4.0711 1.2802 8 7 2.2025 5.1969 1.8663 9 14 2.9779 4.0580 -0.5384 10 1 1.7717 3.7007 -1.3275 11 1 3.4542 5.4046 -0.9447 12 1 4.0471 3.0583 -0.7886 13 6 3.0155 0.3894 1.9136 14 6 2.1295 -0.6810 1.2566 15 1 1.3555 -1.0539 1.9275 16 6 3.0154 -1.8163 0.7173 17 7 3.2840 -1.4997 -0.6951 18 6 4.3950 -1.8090 -1.3927 19 8 4.4524 -1.5674 -2.5798 20 6 5.5657 -2.4548 -0.6977 21 1 5.2154 -2.9976 0.1803 22 6 6.5674 -1.3768 -0.2693 23 6 7.8617 -2.0430 0.2082 24 6 8.5787 -2.6784 -0.9899 25 6 7.5719 -3.4976 -1.7621 26 7 7.8156 -4.4105 -2.6564 27 6 6.6529 -4.9078 -3.1084 28 6 5.6497 -4.2750 -2.4668 29 7 6.2306 -3.3829 -1.6156 30 6 2.1026 -0.7785 -1.1963 31 1 -0.3633 -1.0271 0.0366 32 1 -0.3633 0.5452 0.8711 33 1 -0.3634 0.4817 -0.9077 34 1 2.9336 1.4970 -0.7018 35 1 1.3251 2.1423 -0.2690 36 1 2.1671 6.0197 1.3539 37 1 4.0618 0.2146 1.6627 38 1 2.8818 0.3725 2.9952 39 1 2.4909 -2.7688 0.7940 40 1 3.9506 -1.8586 1.2757 41 1 6.7866 -0.7274 -1.1168 42 1 6.1404 -0.7854 0.5405 43 1 7.6233 -2.8142 0.9406 44 1 8.5094 -1.2947 0.6651 45 1 9.3840 -3.3226 -0.6370 46 1 8.9864 -1.8969 -1.6311 47 1 6.5410 -5.6797 -3.8554 48 1 4.5912 -4.4430 -2.6011 49 1 2.3938 -0.0875 -1.9875 50 1 1.3634 -1.4863 -1.5715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091737804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:46 Heat of formation + Delta-G solvation = 40.160372 kcal Electronic energy + Delta-G solvation = -32073.747546 eV Core-core repulsion = 28101.672391 eV Total energy + Delta-G solvation = -3972.075155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.48294 -41.84587 -40.04235 -37.43583 -36.85500 -34.59039 -34.25148 -33.31100 -31.89293 -31.02866 -29.77189 -28.07589 -27.69357 -27.20722 -25.62593 -24.07011 -23.30717 -22.53739 -22.23810 -20.84422 -20.48133 -19.93792 -19.08986 -18.45339 -18.07613 -17.19405 -17.06174 -16.70488 -16.14163 -15.93245 -15.72598 -15.62590 -15.36953 -15.26771 -14.92064 -14.70737 -14.64828 -14.54792 -14.27431 -13.92021 -13.76054 -13.58482 -13.40350 -13.22125 -13.11005 -13.02845 -12.76929 -12.53583 -12.44882 -12.25358 -12.16657 -12.04487 -11.78112 -11.65177 -11.53317 -11.40815 -11.29281 -11.01354 -10.93356 -10.58519 -9.87176 -9.33308 -9.10907 -8.22877 -5.49515 0.92762 1.08940 1.18509 1.29762 1.34133 1.54905 1.96552 2.11185 2.31745 2.96953 3.03120 3.23438 3.30736 3.38516 3.40608 3.53070 3.59999 3.69567 3.71826 4.01562 4.08450 4.09022 4.15026 4.27166 4.35631 4.47992 4.48877 4.52837 4.56049 4.58791 4.63821 4.66706 4.73407 4.74104 4.80904 4.86341 4.92923 4.94138 5.01105 5.05961 5.11456 5.15912 5.23868 5.26535 5.30786 5.45870 5.65158 5.74919 6.07561 6.10065 6.28699 6.71083 6.78410 7.06650 7.49229 8.10175 8.97343 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.003593 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.770940 B = 7790.224331 C = 8439.528222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 C 0.117 3.883 4 N -0.621 5.621 5 C -0.219 4.219 6 H 0.073 0.927 7 C -0.029 4.029 8 N -0.955 5.955 9 Si 0.933 3.067 10 H -0.279 1.279 11 H -0.310 1.310 12 H -0.279 1.279 13 C 0.131 3.869 14 C -0.093 4.093 15 H 0.130 0.870 16 C 0.102 3.898 17 N -0.606 5.606 18 C 0.521 3.479 19 O -0.572 6.572 20 C 0.128 3.872 21 H 0.147 0.853 22 C -0.128 4.128 23 C -0.110 4.110 24 C -0.037 4.037 25 C 0.201 3.799 26 N -0.522 5.522 27 C -0.052 4.052 28 C -0.043 4.043 29 N -0.444 5.444 30 C 0.120 3.880 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.004 0.996 35 H 0.037 0.963 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.187 0.813 48 H 0.181 0.819 49 H 0.047 0.953 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 -22.687 -0.501 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.078 4.078 3 C -0.008 4.008 4 N -0.345 5.345 5 C -0.348 4.348 6 H 0.091 0.909 7 C -0.224 4.224 8 N -0.602 5.602 9 Si 0.764 3.236 10 H -0.206 1.206 11 H -0.238 1.238 12 H -0.205 1.205 13 C 0.007 3.993 14 C -0.113 4.113 15 H 0.148 0.852 16 C -0.019 4.019 17 N -0.338 5.338 18 C 0.309 3.691 19 O -0.451 6.451 20 C 0.022 3.978 21 H 0.164 0.836 22 C -0.166 4.166 23 C -0.148 4.148 24 C -0.076 4.076 25 C -0.061 4.061 26 N -0.242 5.242 27 C -0.198 4.198 28 C -0.176 4.176 29 N -0.128 5.128 30 C -0.003 4.003 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.021 0.979 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.204 0.796 48 H 0.198 0.802 49 H 0.066 0.934 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.715 -22.498 -1.304 23.024 hybrid contribution -0.787 1.465 -1.280 2.098 sum 3.928 -21.033 -2.584 21.552 Atomic orbital electron populations 1.21629 0.90614 1.03528 1.02011 1.22083 0.97493 0.93316 0.94942 1.21889 0.95422 0.96212 0.87287 1.44910 1.72801 1.04495 1.12341 1.18656 1.42833 0.81861 0.91415 0.90930 1.25462 1.01561 0.95099 1.00248 1.69885 1.52686 0.99981 1.37674 0.86186 0.78684 0.74949 0.83788 1.20589 1.23832 1.20525 1.21722 0.95714 0.83853 0.98019 1.22868 0.98097 0.94336 0.95978 0.85207 1.22590 1.01395 0.98848 0.79087 1.48527 1.15807 1.55519 1.13939 1.20462 0.82852 0.79279 0.86556 1.90755 1.81781 1.55565 1.16975 1.21656 0.91850 0.92107 0.92216 0.83601 1.21956 0.95936 0.95974 1.02748 1.21684 0.94620 1.01531 0.96949 1.20422 0.94523 0.97410 0.95240 1.23969 0.83269 0.99463 0.99418 1.70038 1.29308 1.12358 1.12477 1.22676 0.87500 1.04977 1.04644 1.22733 1.00579 0.96401 0.97916 1.45168 1.07314 1.28727 1.31618 1.22103 0.87032 0.95290 0.95863 0.88807 0.92737 0.92803 0.97867 0.94514 0.92941 0.95110 0.92082 0.86745 0.87918 0.92701 0.87274 0.88782 0.87112 0.86776 0.89451 0.79642 0.80232 0.93407 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 8.50 71.98 0.61 -2.11 16 2 C -0.08 -2.05 1.09 -50.97 -0.06 -2.11 16 3 C 0.12 4.72 3.87 86.51 0.33 5.06 16 4 N -0.62 -27.13 3.19 -695.48 -2.22 -29.34 16 5 C -0.22 -11.89 10.67 84.03 0.90 -10.99 16 6 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 7 C -0.03 -1.69 5.45 84.86 0.46 -1.22 16 8 N -0.95 -59.22 13.97 21.65 0.30 -58.92 16 9 Si 0.93 48.03 24.37 68.60 1.67 49.70 16 10 H -0.28 -13.81 6.47 99.48 0.64 -13.17 16 11 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 12 H -0.28 -14.33 6.39 99.48 0.64 -13.69 16 13 C 0.13 4.03 6.71 86.48 0.58 4.61 16 14 C -0.09 -1.96 3.71 -9.61 -0.04 -2.00 16 15 H 0.13 2.08 7.92 -2.39 -0.02 2.06 16 16 C 0.10 1.50 5.92 86.50 0.51 2.01 16 17 N -0.61 -13.75 3.32 -815.12 -2.71 -16.45 16 18 C 0.52 13.79 6.54 87.66 0.57 14.36 16 19 O -0.57 -20.80 16.47 -3.03 -0.05 -20.85 16 20 C 0.13 2.51 2.93 44.34 0.13 2.64 16 21 H 0.15 1.78 6.71 -2.39 -0.02 1.76 16 22 C -0.13 -2.34 5.25 30.75 0.16 -2.18 16 23 C -0.11 -1.36 5.95 30.79 0.18 -1.17 16 24 C -0.04 -0.62 6.34 30.09 0.19 -0.43 16 25 C 0.20 4.98 7.65 138.23 1.06 6.04 16 26 N -0.52 -15.02 11.24 -187.52 -2.11 -17.12 16 27 C -0.05 -1.32 11.87 83.54 0.99 -0.33 16 28 C -0.04 -1.05 10.47 83.22 0.87 -0.18 16 29 N -0.44 -10.56 2.81 -495.32 -1.39 -11.95 16 30 C 0.12 3.06 5.93 86.51 0.51 3.57 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.00 0.17 5.29 -2.39 -0.01 0.15 16 35 H 0.04 1.66 5.63 -2.39 -0.01 1.65 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.03 0.91 7.40 -2.39 -0.02 0.89 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.10 1.10 6.32 -2.38 -0.02 1.08 16 41 H 0.05 1.34 8.09 -2.39 -0.02 1.32 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 44 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 48 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 49 H 0.05 1.54 7.34 -2.38 -0.02 1.53 16 50 H 0.10 1.98 7.88 -2.39 -0.02 1.96 16 Total: -1.00 -82.02 380.63 2.28 -79.74 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.80 Total: 9.65 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 7.98 Total: 15.56 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -8.12 Total: -133.79 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 1.67 Total: 49.70 kcal Total: -82.02 2.28 -79.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091737804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.896 kcal (2) G-P(sol) polarization free energy of solvation -82.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds