Wall clock time and date at job start Wed Apr 1 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54450 * 112.30520 * 2 1 4 4 N 1.48335 * 104.32301 * 97.55194 * 3 2 1 5 5 C 1.36943 * 128.19828 * 221.80826 * 4 3 2 6 6 H 1.08001 * 120.00026 * 16.04563 * 5 4 3 7 7 C 1.38807 * 119.99498 * 196.03887 * 5 4 3 8 8 N 1.31620 * 120.00488 * 9.51231 * 7 5 4 9 9 Si 1.86807 * 119.99591 * 189.23085 * 7 5 4 10 10 H 1.48507 * 109.46603 * 85.00657 * 9 7 5 11 11 H 1.48500 * 109.46999 * 205.00085 * 9 7 5 12 12 H 1.48500 * 109.47240 * 325.00687 * 9 7 5 13 13 C 1.48333 * 103.60090 * 42.07418 * 4 3 2 14 14 C 1.54871 * 104.11369 * 317.89405 * 13 4 3 15 15 H 1.09004 * 112.91642 * 262.97228 * 14 13 4 16 16 C 1.53742 * 108.86152 * 137.56583 * 14 13 4 17 17 N 1.47199 * 106.42974 * 229.56813 * 16 14 13 18 18 C 1.34780 * 126.70284 * 211.40021 * 17 16 14 19 19 O 1.21572 * 119.99641 * 179.97438 * 18 17 16 20 20 C 1.47711 * 120.00059 * 359.96031 * 18 17 16 21 21 C 1.41641 * 126.49578 * 179.97438 * 20 18 17 22 22 C 1.34701 * 105.33593 * 179.97438 * 21 20 18 23 23 N 1.35505 * 107.71075 * 0.02562 * 22 21 20 24 24 N 1.28421 * 109.72057 * 359.70807 * 23 22 21 25 25 C 1.47001 * 123.90352 * 179.97438 * 23 22 21 26 26 C 1.53143 * 108.88514 * 342.34563 * 25 23 22 27 27 C 1.53148 * 109.60564 * 51.11166 * 26 25 23 28 28 C 1.50797 * 127.53937 * 180.02562 * 22 21 20 29 29 C 1.47193 * 106.59233 * 31.36863 * 17 16 14 30 30 H 1.08997 * 109.47122 * 61.00680 * 1 2 3 31 31 H 1.08997 * 109.47194 * 181.01654 * 1 2 3 32 32 H 1.09004 * 109.46652 * 301.00997 * 1 2 3 33 33 H 1.09007 * 110.45627 * 338.84903 * 3 2 1 34 34 H 1.08995 * 110.57532 * 216.32555 * 3 2 1 35 35 H 0.96996 * 120.00057 * 179.71357 * 8 7 5 36 36 H 1.09001 * 110.46485 * 76.64385 * 13 4 3 37 37 H 1.09001 * 110.45759 * 199.22401 * 13 4 3 38 38 H 1.09001 * 110.06889 * 110.32659 * 16 14 13 39 39 H 1.09002 * 110.10924 * 348.83121 * 16 14 13 40 40 H 1.07997 * 127.33359 * 359.97438 * 21 20 18 41 41 H 1.08999 * 109.56698 * 102.16712 * 25 23 22 42 42 H 1.09004 * 109.56589 * 222.52611 * 25 23 22 43 43 H 1.09007 * 109.44763 * 171.15563 * 26 25 23 44 44 H 1.09002 * 109.45067 * 291.06950 * 26 25 23 45 45 H 1.09005 * 109.53935 * 50.28185 * 27 26 25 46 46 H 1.08999 * 109.54319 * 170.53325 * 27 26 25 47 47 H 1.08991 * 109.71881 * 284.10150 * 28 22 21 48 48 H 1.08999 * 109.71453 * 44.74624 * 28 22 21 49 49 H 1.09000 * 110.06166 * 209.38860 * 29 17 16 50 50 H 1.09003 * 110.11374 * 87.89518 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1162 1.4289 0.0000 4 7 2.4302 1.6967 1.4248 5 6 2.2224 2.8486 2.1357 6 1 1.5560 3.6070 1.7523 7 6 2.8681 3.0411 3.3493 8 7 3.8174 2.2120 3.7285 9 14 2.3951 4.4815 4.4407 10 1 1.2313 4.1035 5.2822 11 1 3.5420 4.8385 5.3138 12 1 2.0359 5.6472 3.5938 13 6 3.0288 0.4237 1.8953 14 6 2.1338 -0.6708 1.2632 15 1 1.3672 -1.0385 1.9453 16 6 3.0308 -1.8003 0.7310 17 7 2.5948 -2.0625 -0.6502 18 6 2.6294 -3.2456 -1.2950 19 8 2.2354 -3.3242 -2.4424 20 6 3.1462 -4.4465 -0.6076 21 6 3.2442 -5.7511 -1.1503 22 6 3.7683 -6.5077 -0.1667 23 7 3.9733 -5.7053 0.9058 24 7 3.6092 -4.5061 0.6257 25 6 4.5362 -6.1699 2.1818 26 6 4.4251 -7.6959 2.2462 27 6 5.0096 -8.3080 0.9698 28 6 4.0845 -7.9815 -0.2105 29 6 2.1130 -0.7805 -1.1895 30 1 -0.3633 0.4981 -0.8988 31 1 -0.3633 -1.0275 0.0182 32 1 -0.3633 0.5295 0.8808 33 1 1.3795 2.1429 -0.3685 34 1 3.0222 1.4713 -0.6045 35 1 4.2715 2.3490 4.5746 36 1 4.0554 0.3314 1.5410 37 1 2.9934 0.3653 2.9832 38 1 2.9049 -2.6960 1.3393 39 1 4.0745 -1.4859 0.7404 40 1 2.9594 -6.0712 -2.1416 41 1 5.5841 -5.8771 2.2467 42 1 3.9800 -5.7281 3.0086 43 1 4.9773 -8.0639 3.1110 44 1 3.3768 -7.9800 2.3378 45 1 5.9992 -7.8901 0.7851 46 1 5.0850 -9.3893 1.0853 47 1 3.1632 -8.5579 -0.1275 48 1 4.5864 -8.2222 -1.1476 49 1 1.3391 -0.9563 -1.9367 50 1 2.9402 -0.2252 -1.6317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091768879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:45 Heat of formation + Delta-G solvation = 76.685025 kcal Electronic energy + Delta-G solvation = -30947.078114 eV Core-core repulsion = 26976.586787 eV Total energy + Delta-G solvation = -3970.491327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.87943 -40.00113 -38.13650 -36.87058 -34.88122 -33.28374 -32.68739 -30.95659 -30.45989 -29.69866 -28.89035 -26.77380 -25.82791 -25.01978 -24.53525 -23.29656 -22.33705 -21.75736 -20.42636 -19.94114 -18.73887 -18.26674 -17.04512 -16.77026 -16.56610 -16.06546 -15.52488 -15.27907 -14.83259 -14.73467 -14.51886 -14.33746 -14.18880 -13.78981 -13.65694 -13.53932 -13.19864 -13.05217 -12.72208 -12.31997 -12.23564 -12.00512 -11.68592 -11.61142 -11.54025 -11.48559 -11.44324 -11.29273 -10.92993 -10.81318 -10.74549 -10.53475 -10.19608 -9.95172 -9.89890 -9.77465 -9.63342 -9.56689 -9.12833 -9.01424 -8.65220 -8.30092 -6.82871 -5.77133 -3.11340 1.63413 2.06193 2.27243 3.27167 3.39271 3.44617 3.45870 3.58943 3.94848 4.15625 4.22946 4.32631 4.48106 4.59467 4.78337 4.89859 4.92829 5.06421 5.08043 5.17628 5.23840 5.29680 5.31905 5.36579 5.46968 5.53448 5.59135 5.65657 5.71036 5.74169 5.77165 5.83266 5.90253 6.02488 6.16615 6.21659 6.24086 6.39166 6.42846 6.53367 6.55574 6.61971 6.69168 6.81147 6.84972 6.98494 7.35338 7.55857 7.73285 7.80217 7.91875 8.22795 8.41740 9.12494 9.75817 10.54992 11.36623 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.002806 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.429985 B = 9977.267670 C =11483.337705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.087 4.087 3 C 0.137 3.863 4 N -0.593 5.593 5 C -0.222 4.222 6 H 0.076 0.924 7 C -0.006 4.006 8 N -0.915 5.915 9 Si 0.911 3.089 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.164 3.836 14 C -0.116 4.116 15 H 0.080 0.920 16 C 0.107 3.893 17 N -0.600 5.600 18 C 0.616 3.384 19 O -0.546 6.546 20 C -0.008 4.008 21 C -0.177 4.177 22 C 0.009 3.991 23 N -0.283 5.283 24 N -0.249 5.249 25 C 0.120 3.880 26 C -0.136 4.136 27 C -0.127 4.127 28 C -0.051 4.051 29 C 0.118 3.882 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.027 0.973 35 H 0.253 0.747 36 H 0.024 0.976 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.160 0.840 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.075 0.925 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -22.814 -4.125 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.090 4.090 3 C 0.010 3.990 4 N -0.316 5.316 5 C -0.350 4.350 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.562 5.562 9 Si 0.741 3.259 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.038 3.962 14 C -0.137 4.137 15 H 0.099 0.901 16 C -0.016 4.016 17 N -0.331 5.331 18 C 0.403 3.597 19 O -0.423 6.423 20 C -0.168 4.168 21 C -0.205 4.205 22 C -0.115 4.115 23 N -0.073 5.073 24 N -0.084 5.084 25 C 0.000 4.000 26 C -0.174 4.174 27 C -0.165 4.165 28 C -0.089 4.089 29 C -0.005 4.005 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.178 0.822 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.093 0.907 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.545 -22.127 -3.480 22.453 hybrid contribution -0.193 0.325 0.037 0.379 sum 1.352 -21.803 -3.443 22.115 Atomic orbital electron populations 1.21569 0.93529 1.00696 1.01829 1.22370 0.95611 0.97342 0.93659 1.21872 0.96645 0.92022 0.88502 1.45070 1.71757 1.10474 1.04318 1.18980 1.20543 0.94620 1.00895 0.90651 1.24874 0.97175 0.98830 0.99451 1.69883 1.25025 1.38649 1.22639 0.86162 0.77363 0.81844 0.80516 1.21531 1.21727 1.20659 1.21811 0.91875 0.82162 1.00338 1.23338 0.98260 0.95685 0.96438 0.90141 1.22492 0.98445 0.99460 0.81239 1.48439 1.61487 1.07645 1.15526 1.16493 0.78113 0.80337 0.84715 1.90759 1.49783 1.84819 1.16944 1.21876 1.07594 0.95457 0.91920 1.21259 1.06989 0.91491 1.00789 1.21247 1.06086 0.95461 0.88674 1.45835 1.44641 1.04775 1.12020 1.73607 1.15206 1.02745 1.16854 1.22156 1.00212 0.95444 0.82186 1.21937 1.03314 0.92510 0.99657 1.21701 0.99278 1.01727 0.93788 1.20334 1.00480 0.88133 0.99973 1.22212 0.98845 0.82879 0.96524 0.93026 0.93547 0.91776 0.93217 0.95529 0.93657 0.95772 0.89315 0.89192 0.91268 0.82227 0.88819 0.87942 0.88708 0.90398 0.91018 0.90137 0.89581 0.89143 0.90680 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 8.61 37.16 0.32 -1.63 16 2 C -0.09 -1.57 1.08 -152.17 -0.16 -1.74 16 3 C 0.14 2.83 6.37 -2.27 -0.01 2.82 16 4 N -0.59 -14.88 3.37 -168.21 -0.57 -15.45 16 5 C -0.22 -6.09 10.37 -15.06 -0.16 -6.25 16 6 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 7 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 8 N -0.92 -26.42 10.88 55.49 0.60 -25.82 16 9 Si 0.91 21.80 29.56 -169.99 -5.03 16.78 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 C 0.16 3.85 5.51 -2.05 -0.01 3.83 16 14 C -0.12 -2.22 3.77 -88.06 -0.33 -2.55 16 15 H 0.08 1.53 7.95 -51.93 -0.41 1.12 16 16 C 0.11 1.86 6.01 -3.27 -0.02 1.84 16 17 N -0.60 -10.60 3.32 -172.81 -0.57 -11.17 16 18 C 0.62 11.19 7.88 -12.39 -0.10 11.09 16 19 O -0.55 -11.01 17.15 5.30 0.09 -10.92 16 20 C -0.01 -0.13 6.98 -82.69 -0.58 -0.71 16 21 C -0.18 -2.35 10.75 -39.54 -0.43 -2.78 16 22 C 0.01 0.09 6.57 -82.18 -0.54 -0.45 16 23 N -0.28 -3.26 3.74 -56.71 -0.21 -3.47 16 24 N -0.25 -3.69 9.10 33.46 0.30 -3.39 16 25 C 0.12 0.87 7.17 -3.69 -0.03 0.85 16 26 C -0.14 -0.62 5.91 -26.58 -0.16 -0.77 16 27 C -0.13 -0.57 5.98 -26.41 -0.16 -0.73 16 28 C -0.05 -0.32 6.28 -27.59 -0.17 -0.49 16 29 C 0.12 2.03 6.21 -3.28 -0.02 2.01 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 34 H 0.03 0.56 7.17 -51.93 -0.37 0.19 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.02 0.60 7.18 -51.93 -0.37 0.22 16 37 H 0.09 2.32 6.45 -51.93 -0.33 1.99 16 38 H 0.09 1.52 5.79 -51.93 -0.30 1.22 16 39 H 0.07 1.26 7.10 -51.93 -0.37 0.89 16 40 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.24 8.14 -51.92 -0.42 -0.18 16 44 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 45 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 46 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.07 1.26 7.61 -51.93 -0.40 0.87 16 50 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -33.53 387.31 -10.14 -43.68 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.95 Total: -0.14 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.65 Total: 4.07 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.44 Total: -59.30 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.53 -10.14 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091768879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.361 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds