Wall clock time and date at job start Wed Apr 1 2020 03:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54450 * 112.30520 * 2 1 4 4 N 1.48335 * 104.32301 * 97.55194 * 3 2 1 5 5 C 1.36943 * 128.19828 * 221.80826 * 4 3 2 6 6 H 1.08001 * 120.00026 * 16.04563 * 5 4 3 7 7 C 1.38807 * 119.99498 * 196.03887 * 5 4 3 8 8 N 1.31620 * 120.00488 * 9.51231 * 7 5 4 9 9 Si 1.86807 * 119.99591 * 189.23085 * 7 5 4 10 10 H 1.48507 * 109.46603 * 85.00657 * 9 7 5 11 11 H 1.48500 * 109.46999 * 205.00085 * 9 7 5 12 12 H 1.48500 * 109.47240 * 325.00687 * 9 7 5 13 13 C 1.48333 * 103.60090 * 42.07418 * 4 3 2 14 14 C 1.54871 * 104.11369 * 317.89405 * 13 4 3 15 15 H 1.09004 * 112.91642 * 262.97228 * 14 13 4 16 16 C 1.53742 * 108.86152 * 137.56583 * 14 13 4 17 17 N 1.47199 * 106.42974 * 229.56813 * 16 14 13 18 18 C 1.34780 * 126.70284 * 211.40021 * 17 16 14 19 19 O 1.21572 * 119.99641 * 179.97438 * 18 17 16 20 20 C 1.47711 * 120.00059 * 359.96031 * 18 17 16 21 21 C 1.41641 * 126.49578 * 179.97438 * 20 18 17 22 22 C 1.34701 * 105.33593 * 179.97438 * 21 20 18 23 23 N 1.35505 * 107.71075 * 0.02562 * 22 21 20 24 24 N 1.28421 * 109.72057 * 359.70807 * 23 22 21 25 25 C 1.47001 * 123.90352 * 179.97438 * 23 22 21 26 26 C 1.53143 * 108.88514 * 342.34563 * 25 23 22 27 27 C 1.53148 * 109.60564 * 51.11166 * 26 25 23 28 28 C 1.50797 * 127.53937 * 180.02562 * 22 21 20 29 29 C 1.47193 * 106.59233 * 31.36863 * 17 16 14 30 30 H 1.08997 * 109.47122 * 61.00680 * 1 2 3 31 31 H 1.08997 * 109.47194 * 181.01654 * 1 2 3 32 32 H 1.09004 * 109.46652 * 301.00997 * 1 2 3 33 33 H 1.09007 * 110.45627 * 338.84903 * 3 2 1 34 34 H 1.08995 * 110.57532 * 216.32555 * 3 2 1 35 35 H 0.96996 * 120.00057 * 179.71357 * 8 7 5 36 36 H 1.09001 * 110.46485 * 76.64385 * 13 4 3 37 37 H 1.09001 * 110.45759 * 199.22401 * 13 4 3 38 38 H 1.09001 * 110.06889 * 110.32659 * 16 14 13 39 39 H 1.09002 * 110.10924 * 348.83121 * 16 14 13 40 40 H 1.07997 * 127.33359 * 359.97438 * 21 20 18 41 41 H 1.08999 * 109.56698 * 102.16712 * 25 23 22 42 42 H 1.09004 * 109.56589 * 222.52611 * 25 23 22 43 43 H 1.09007 * 109.44763 * 171.15563 * 26 25 23 44 44 H 1.09002 * 109.45067 * 291.06950 * 26 25 23 45 45 H 1.09005 * 109.53935 * 50.28185 * 27 26 25 46 46 H 1.08999 * 109.54319 * 170.53325 * 27 26 25 47 47 H 1.08991 * 109.71881 * 284.10150 * 28 22 21 48 48 H 1.08999 * 109.71453 * 44.74624 * 28 22 21 49 49 H 1.09000 * 110.06166 * 209.38860 * 29 17 16 50 50 H 1.09003 * 110.11374 * 87.89518 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1162 1.4289 0.0000 4 7 2.4302 1.6967 1.4248 5 6 2.2224 2.8486 2.1357 6 1 1.5560 3.6070 1.7523 7 6 2.8681 3.0411 3.3493 8 7 3.8174 2.2120 3.7285 9 14 2.3951 4.4815 4.4407 10 1 1.2313 4.1035 5.2822 11 1 3.5420 4.8385 5.3138 12 1 2.0359 5.6472 3.5938 13 6 3.0288 0.4237 1.8953 14 6 2.1338 -0.6708 1.2632 15 1 1.3672 -1.0385 1.9453 16 6 3.0308 -1.8003 0.7310 17 7 2.5948 -2.0625 -0.6502 18 6 2.6294 -3.2456 -1.2950 19 8 2.2354 -3.3242 -2.4424 20 6 3.1462 -4.4465 -0.6076 21 6 3.2442 -5.7511 -1.1503 22 6 3.7683 -6.5077 -0.1667 23 7 3.9733 -5.7053 0.9058 24 7 3.6092 -4.5061 0.6257 25 6 4.5362 -6.1699 2.1818 26 6 4.4251 -7.6959 2.2462 27 6 5.0096 -8.3080 0.9698 28 6 4.0845 -7.9815 -0.2105 29 6 2.1130 -0.7805 -1.1895 30 1 -0.3633 0.4981 -0.8988 31 1 -0.3633 -1.0275 0.0182 32 1 -0.3633 0.5295 0.8808 33 1 1.3795 2.1429 -0.3685 34 1 3.0222 1.4713 -0.6045 35 1 4.2715 2.3490 4.5746 36 1 4.0554 0.3314 1.5410 37 1 2.9934 0.3653 2.9832 38 1 2.9049 -2.6960 1.3393 39 1 4.0745 -1.4859 0.7404 40 1 2.9594 -6.0712 -2.1416 41 1 5.5841 -5.8771 2.2467 42 1 3.9800 -5.7281 3.0086 43 1 4.9773 -8.0639 3.1110 44 1 3.3768 -7.9800 2.3378 45 1 5.9992 -7.8901 0.7851 46 1 5.0850 -9.3893 1.0853 47 1 3.1632 -8.5579 -0.1275 48 1 4.5864 -8.2222 -1.1476 49 1 1.3391 -0.9563 -1.9367 50 1 2.9402 -0.2252 -1.6317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091768879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:44 Heat of formation + Delta-G solvation = 56.850192 kcal Electronic energy + Delta-G solvation = -30947.938217 eV Core-core repulsion = 26976.586787 eV Total energy + Delta-G solvation = -3971.351430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.82073 -41.50604 -39.62012 -37.48023 -36.59325 -34.45055 -34.04282 -32.62434 -31.62866 -31.23148 -29.63683 -28.13117 -27.59448 -26.67066 -25.37462 -24.52743 -23.31815 -22.91967 -22.22702 -20.85123 -20.13041 -19.55828 -18.60409 -17.97829 -17.66265 -17.19494 -16.98425 -16.62008 -16.51261 -15.89072 -15.52249 -15.31346 -15.17959 -15.02034 -14.96152 -14.67887 -14.55780 -14.17404 -14.02256 -13.64164 -13.58663 -13.25237 -13.17473 -13.08682 -12.85675 -12.71068 -12.57390 -12.32533 -12.15803 -11.97954 -11.92904 -11.86391 -11.78225 -11.69947 -11.53610 -11.40460 -11.28059 -11.15541 -10.70150 -10.15651 -9.92442 -9.72310 -8.86111 -7.87585 -5.23835 0.48011 1.12119 1.44687 1.48181 1.49718 1.57678 1.96126 2.29418 2.50612 3.17747 3.31481 3.42084 3.47056 3.58420 3.73251 3.79786 3.90336 3.92120 3.94002 4.19799 4.22107 4.27053 4.31559 4.36980 4.42606 4.51472 4.54543 4.64494 4.70152 4.73965 4.76466 4.84022 4.87741 4.92438 4.96861 5.01038 5.03744 5.05703 5.12370 5.15173 5.21261 5.24243 5.32109 5.39867 5.42691 5.47269 5.56698 5.70107 5.89503 6.20552 6.40960 6.81006 7.03363 7.09056 7.70485 8.51280 9.25497 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.002806 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.429985 B = 9977.267670 C =11483.337705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.076 4.076 3 C 0.135 3.865 4 N -0.616 5.616 5 C -0.234 4.234 6 H 0.080 0.920 7 C -0.061 4.061 8 N -0.946 5.946 9 Si 0.977 3.023 10 H -0.285 1.285 11 H -0.296 1.296 12 H -0.270 1.270 13 C 0.174 3.826 14 C -0.105 4.105 15 H 0.083 0.917 16 C 0.123 3.877 17 N -0.602 5.602 18 C 0.615 3.385 19 O -0.572 6.572 20 C -0.041 4.041 21 C -0.199 4.199 22 C 0.025 3.975 23 N -0.278 5.278 24 N -0.272 5.272 25 C 0.105 3.895 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.051 4.051 29 C 0.121 3.879 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.249 0.751 36 H 0.004 0.996 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.166 0.834 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.084 0.916 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 -24.997 -4.013 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C 0.010 3.990 4 N -0.339 5.339 5 C -0.363 4.363 6 H 0.098 0.902 7 C -0.255 4.255 8 N -0.594 5.594 9 Si 0.805 3.195 10 H -0.211 1.211 11 H -0.222 1.222 12 H -0.195 1.195 13 C 0.048 3.952 14 C -0.126 4.126 15 H 0.102 0.898 16 C -0.001 4.001 17 N -0.332 5.332 18 C 0.404 3.596 19 O -0.451 6.451 20 C -0.199 4.199 21 C -0.227 4.227 22 C -0.099 4.099 23 N -0.068 5.068 24 N -0.109 5.109 25 C -0.013 4.013 26 C -0.167 4.167 27 C -0.162 4.162 28 C -0.090 4.090 29 C -0.001 4.001 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.183 0.817 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.140 0.860 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.103 0.897 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.126 -24.315 -3.384 24.576 hybrid contribution 0.000 0.933 0.004 0.933 sum 1.126 -23.382 -3.381 23.652 Atomic orbital electron populations 1.21516 0.91753 1.01417 1.02247 1.22271 0.96846 0.95476 0.93295 1.22006 0.96905 0.93852 0.86278 1.45335 1.71886 1.10452 1.06253 1.19338 1.20237 0.95382 1.01312 0.90220 1.25675 0.97439 1.01550 1.00843 1.70070 1.26185 1.40347 1.22758 0.85131 0.76684 0.79132 0.78569 1.21150 1.22224 1.19509 1.21575 0.91792 0.83350 0.98496 1.23138 0.97771 0.94926 0.96795 0.89819 1.22245 0.97310 0.99035 0.81471 1.48443 1.61570 1.07855 1.15379 1.16829 0.77500 0.80817 0.84503 1.90723 1.51060 1.85318 1.18012 1.21727 1.09700 0.95580 0.92942 1.21475 1.08347 0.90926 1.01930 1.21876 1.03518 0.97248 0.87302 1.46306 1.43196 1.03933 1.13384 1.73482 1.16048 1.04789 1.16583 1.22631 1.00493 0.97708 0.80470 1.21979 1.03860 0.89939 1.00904 1.21731 0.98438 1.03343 0.92659 1.20579 1.01888 0.84839 1.01648 1.22168 0.99081 0.82731 0.96168 0.90961 0.92582 0.93060 0.92264 0.95712 0.94211 0.97761 0.92524 0.88373 0.92352 0.81682 0.87879 0.87805 0.86013 0.90399 0.91317 0.87498 0.87958 0.87838 0.89736 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.52 8.61 71.98 0.62 -2.90 16 2 C -0.08 -2.73 1.08 -50.67 -0.05 -2.78 16 3 C 0.14 5.62 6.37 86.52 0.55 6.18 16 4 N -0.62 -31.50 3.37 -686.09 -2.31 -33.81 16 5 C -0.23 -12.98 10.37 84.03 0.87 -12.11 16 6 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 7 C -0.06 -3.45 5.40 84.86 0.46 -2.99 16 8 N -0.95 -56.23 10.88 21.65 0.24 -55.99 16 9 Si 0.98 45.32 29.56 68.60 2.03 47.35 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.17 8.46 5.51 86.67 0.48 8.93 16 14 C -0.11 -4.08 3.77 -9.13 -0.03 -4.12 16 15 H 0.08 3.21 7.95 -2.38 -0.02 3.19 16 16 C 0.12 4.36 6.01 86.50 0.52 4.88 16 17 N -0.60 -21.38 3.32 -818.92 -2.72 -24.10 16 18 C 0.61 22.57 7.88 86.75 0.68 23.25 16 19 O -0.57 -23.30 17.15 -3.94 -0.07 -23.37 16 20 C -0.04 -1.33 6.98 42.48 0.30 -1.03 16 21 C -0.20 -5.20 10.75 22.30 0.24 -4.96 16 22 C 0.03 0.49 6.57 41.21 0.27 0.76 16 23 N -0.28 -6.09 3.74 -333.32 -1.25 -7.34 16 24 N -0.27 -8.07 9.10 -48.06 -0.44 -8.51 16 25 C 0.11 1.34 7.17 86.33 0.62 1.96 16 26 C -0.13 -0.74 5.91 30.69 0.18 -0.56 16 27 C -0.12 -0.65 5.98 30.80 0.18 -0.47 16 28 C -0.05 -0.48 6.28 30.04 0.19 -0.29 16 29 C 0.12 4.12 6.21 86.50 0.54 4.65 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.32 7.92 -2.38 -0.02 2.30 16 34 H 0.03 1.05 7.17 -2.39 -0.02 1.03 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.00 0.23 7.18 -2.39 -0.02 0.21 16 37 H 0.06 3.11 6.45 -2.39 -0.02 3.09 16 38 H 0.10 3.37 5.79 -2.39 -0.01 3.35 16 39 H 0.06 2.21 7.10 -2.39 -0.02 2.19 16 40 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 44 H 0.08 0.50 8.11 -2.39 -0.02 0.48 16 45 H 0.07 0.44 8.12 -2.38 -0.02 0.42 16 46 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.08 2.74 7.61 -2.39 -0.02 2.73 16 50 H 0.07 2.37 7.11 -2.39 -0.02 2.35 16 Total: -1.00 -74.61 387.31 3.03 -71.58 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.94 Total: 15.77 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.61 Total: 18.41 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -6.48 Total: -129.74 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.07 Total: -23.37 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.61 3.03 -71.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091768879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.427 kcal (2) G-P(sol) polarization free energy of solvation -74.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds