Wall clock time and date at job start Wed Apr 1 2020 03:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53787 * 111.85488 * 2 1 4 4 N 1.47213 * 106.37622 * 140.61473 * 3 2 1 5 5 C 1.36929 * 126.70371 * 148.74303 * 4 3 2 6 6 H 1.08002 * 120.00258 * 342.12982 * 5 4 3 7 7 C 1.38813 * 119.99955 * 162.12650 * 5 4 3 8 8 N 1.31625 * 120.00023 * 159.74868 * 7 5 4 9 9 Si 1.86795 * 120.00038 * 339.74867 * 7 5 4 10 10 H 1.48497 * 109.47288 * 84.68084 * 9 7 5 11 11 H 1.48503 * 109.47178 * 204.68516 * 9 7 5 12 12 H 1.48502 * 109.47288 * 324.68028 * 9 7 5 13 13 C 1.47217 * 106.59559 * 328.72266 * 4 3 2 14 14 C 1.53789 * 106.37549 * 31.27475 * 13 4 3 15 15 H 1.09001 * 112.59884 * 218.96762 * 14 13 4 16 16 C 1.53782 * 109.34706 * 93.96141 * 14 13 4 17 17 N 1.47215 * 106.42259 * 228.48937 * 16 14 13 18 18 C 1.34780 * 126.70125 * 211.27598 * 17 16 14 19 19 O 1.21279 * 119.99974 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99719 * 0.02654 * 18 17 16 21 21 H 1.09006 * 109.43269 * 59.90364 * 20 18 17 22 22 C 1.53112 * 109.43015 * 179.76159 * 20 18 17 23 23 C 1.53491 * 109.30605 * 189.98759 * 22 20 18 24 24 C 1.50709 * 108.06014 * 311.30221 * 23 22 20 25 25 C 1.33865 * 128.67797 * 195.79471 * 24 23 22 26 26 N 1.34424 * 107.79600 * 179.84200 * 25 24 23 27 27 C 1.30785 * 109.32243 * 359.97438 * 26 25 24 28 28 N 1.34416 * 108.55631 * 0.06888 * 27 26 25 29 29 C 1.46469 * 128.44894 * 179.82266 * 28 27 26 30 30 C 1.47351 * 106.52545 * 31.27535 * 17 16 14 31 31 H 1.09000 * 109.47385 * 302.06076 * 1 2 3 32 32 H 1.09000 * 109.47663 * 62.06124 * 1 2 3 33 33 H 1.09005 * 109.47257 * 182.06466 * 1 2 3 34 34 H 1.09003 * 110.07123 * 259.84183 * 3 2 1 35 35 H 1.09000 * 110.07360 * 21.32610 * 3 2 1 36 36 H 0.96997 * 119.99786 * 179.97438 * 8 7 5 37 37 H 1.08997 * 110.07338 * 272.05121 * 13 4 3 38 38 H 1.09002 * 110.07820 * 150.49902 * 13 4 3 39 39 H 1.08998 * 110.07043 * 347.74520 * 16 14 13 40 40 H 1.08997 * 110.07387 * 109.23372 * 16 14 13 41 41 H 1.09007 * 109.50199 * 309.93795 * 22 20 18 42 42 H 1.09004 * 109.50216 * 70.03817 * 22 20 18 43 43 H 1.09005 * 109.74780 * 191.65941 * 23 22 20 44 44 H 1.08997 * 109.77970 * 70.96606 * 23 22 20 45 45 H 1.07996 * 126.10159 * 359.83828 * 25 24 23 46 46 H 1.07997 * 125.72812 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.59583 * 77.53658 * 29 28 27 48 48 H 1.08997 * 109.73147 * 317.13274 * 29 28 27 49 49 H 1.09003 * 110.06003 * 209.49130 * 30 17 16 50 50 H 1.09006 * 110.11885 * 87.99123 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4273 0.0000 4 7 3.2702 1.4062 0.8962 5 6 4.4001 2.1717 0.7863 6 1 4.6342 2.6579 -0.1493 7 6 5.2449 2.3229 1.8774 8 7 6.4929 2.6999 1.6962 9 14 4.6105 1.9913 3.6027 10 1 4.7123 0.5394 3.8971 11 1 5.4237 2.7536 4.5841 12 1 3.1912 2.4176 3.6988 13 6 2.9855 0.4016 1.9341 14 6 2.1092 -0.6728 1.2687 15 1 1.3242 -1.0412 1.9292 16 6 3.0039 -1.8118 0.7519 17 7 2.5856 -2.0729 -0.6352 18 6 2.6211 -3.2571 -1.2779 19 8 2.2446 -3.3343 -2.4282 20 6 3.1284 -4.4852 -0.5670 21 1 2.5104 -4.6779 0.3100 22 6 3.0575 -5.6871 -1.5130 23 6 3.3339 -6.9728 -0.7215 24 6 4.5759 -6.7555 0.1039 25 6 5.3451 -7.6659 0.7136 26 7 6.3456 -7.0124 1.3291 27 6 6.2181 -5.7280 1.1179 28 7 5.1270 -5.5255 0.3596 29 6 4.5802 -4.2577 -0.1295 30 6 2.1210 -0.7860 -1.1822 31 1 -0.3634 0.5455 0.8709 32 1 -0.3634 0.4815 -0.9079 33 1 -0.3634 -1.0270 0.0370 34 1 2.4093 1.7073 -1.0078 35 1 1.3566 2.1296 0.3723 36 1 7.0831 2.8059 2.4586 37 1 2.4481 0.8621 2.7630 38 1 3.9152 -0.0420 2.2905 39 1 4.0499 -1.5060 0.7760 40 1 2.8614 -2.7049 1.3601 41 1 2.0645 -5.7409 -1.9592 42 1 3.8046 -5.5761 -2.2990 43 1 3.4901 -7.8030 -1.4104 44 1 2.4903 -7.1915 -0.0669 45 1 5.1895 -8.7345 0.7114 46 1 6.8783 -4.9590 1.4908 47 1 5.1686 -3.9091 -0.9783 48 1 4.6091 -3.5132 0.6660 49 1 1.3551 -0.9560 -1.9389 50 1 2.9584 -0.2381 -1.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091798035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:00 Heat of formation + Delta-G solvation = 60.702024 kcal Electronic energy + Delta-G solvation = -31686.228557 eV Core-core repulsion = 27715.044155 eV Total energy + Delta-G solvation = -3971.184402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.52687 -40.73617 -39.05150 -36.40868 -35.36818 -33.36122 -32.96628 -31.62409 -30.91342 -30.40971 -28.19795 -26.79865 -26.11021 -25.86208 -24.84107 -22.97145 -22.18752 -21.57651 -20.89810 -19.73336 -19.27567 -18.89926 -17.32116 -17.26602 -16.82398 -16.11265 -15.98400 -15.40963 -15.28275 -14.75016 -14.57210 -14.38965 -14.17361 -14.06884 -13.91135 -13.62299 -13.44783 -13.29398 -12.93702 -12.83673 -12.66172 -12.36401 -12.32411 -12.11310 -11.90139 -11.81539 -11.50307 -11.35079 -11.27653 -11.09861 -10.89852 -10.64405 -10.46463 -10.18526 -10.14570 -10.06896 -9.88867 -9.68536 -9.52982 -8.89004 -8.71347 -8.48700 -7.22961 -6.05512 -3.38512 1.89784 2.30309 2.60439 2.86230 3.03996 3.19654 3.37588 3.39314 4.01322 4.10066 4.22666 4.40847 4.44836 4.49712 4.59130 4.65671 4.72216 4.80406 4.85323 4.91627 5.00100 5.05173 5.14581 5.20408 5.26505 5.27894 5.31650 5.38247 5.49016 5.53589 5.55421 5.69328 5.73660 5.74492 5.83572 5.86435 5.96396 6.00391 6.06535 6.13025 6.20412 6.30598 6.31950 6.46991 6.52806 6.57018 6.58392 7.03307 7.44844 7.52961 7.93484 7.97746 8.19471 8.68647 9.54918 10.04595 11.10299 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011317 B = 0.003782 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.620584 B = 7400.879704 C = 9082.352265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C 0.144 3.856 4 N -0.602 5.602 5 C -0.241 4.241 6 H 0.095 0.905 7 C 0.022 3.978 8 N -0.908 5.908 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.302 1.302 12 H -0.274 1.274 13 C 0.114 3.886 14 C -0.106 4.106 15 H 0.089 0.911 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.538 3.462 19 O -0.537 6.537 20 C -0.114 4.114 21 H 0.106 0.894 22 C -0.104 4.104 23 C -0.045 4.045 24 C -0.028 4.028 25 C -0.025 4.025 26 N -0.498 5.498 27 C 0.189 3.811 28 N -0.453 5.453 29 C 0.108 3.892 30 C 0.123 3.877 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.264 0.736 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.168 0.832 46 H 0.207 0.793 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.076 0.924 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 -15.978 -2.890 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.088 4.088 3 C 0.018 3.982 4 N -0.327 5.327 5 C -0.368 4.368 6 H 0.112 0.888 7 C -0.176 4.176 8 N -0.552 5.552 9 Si 0.713 3.287 10 H -0.214 1.214 11 H -0.229 1.229 12 H -0.200 1.200 13 C -0.012 4.012 14 C -0.127 4.127 15 H 0.107 0.893 16 C -0.020 4.020 17 N -0.342 5.342 18 C 0.325 3.675 19 O -0.414 6.414 20 C -0.136 4.136 21 H 0.124 0.876 22 C -0.142 4.142 23 C -0.083 4.083 24 C -0.143 4.143 25 C -0.172 4.172 26 N -0.216 5.216 27 C -0.093 4.093 28 N -0.137 5.137 29 C -0.015 4.015 30 C 0.001 3.999 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.185 0.815 46 H 0.223 0.777 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.094 0.906 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.445 -16.184 -3.087 18.991 hybrid contribution -0.746 0.486 0.858 1.237 sum -10.191 -15.698 -2.229 18.848 Atomic orbital electron populations 1.21666 0.93102 1.01383 1.02145 1.22139 0.95362 0.97379 0.93930 1.21416 0.89527 0.91762 0.95540 1.44787 1.16577 1.42192 1.29094 1.18645 0.95379 1.24913 0.97864 0.88787 1.24973 0.95623 0.99426 0.97598 1.69808 1.03906 1.50777 1.30686 0.87022 0.78544 0.77042 0.86131 1.21356 1.22938 1.19953 1.21826 0.97317 0.89592 0.92514 1.22820 0.97516 0.95354 0.96990 0.89288 1.22426 0.99938 0.98110 0.81490 1.48627 1.63006 1.08113 1.14443 1.19744 0.78719 0.82703 0.86290 1.90714 1.48855 1.84855 1.16961 1.21568 0.96039 0.95016 1.00979 0.87580 1.21505 1.04458 0.91242 0.97031 1.20247 0.92728 0.98338 0.96980 1.21195 1.00915 0.85091 1.07050 1.21817 0.94259 0.99321 1.01853 1.70519 1.24349 1.03245 1.23444 1.24904 0.91064 0.95588 0.97755 1.45388 1.22052 1.06826 1.39388 1.22059 0.93584 0.84248 1.01621 1.22184 0.99370 0.82475 0.95845 0.92076 0.92245 0.92902 0.92646 0.95254 0.92579 0.95170 0.91591 0.89885 0.91180 0.89339 0.90662 0.89046 0.89916 0.81480 0.77693 0.88918 0.87805 0.90571 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.49 37.16 0.32 -1.10 16 2 C -0.09 -1.19 1.09 -152.72 -0.17 -1.36 16 3 C 0.14 2.50 6.20 -3.24 -0.02 2.48 16 4 N -0.60 -12.96 3.21 -171.12 -0.55 -13.51 16 5 C -0.24 -6.32 10.66 -15.06 -0.16 -6.48 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.02 0.61 5.45 -17.43 -0.09 0.52 16 8 N -0.91 -26.64 13.97 55.49 0.78 -25.86 16 9 Si 0.88 21.07 24.36 -169.99 -4.14 16.93 16 10 H -0.29 -6.43 6.36 56.52 0.36 -6.08 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.27 -6.45 6.49 56.52 0.37 -6.09 16 13 C 0.11 2.14 4.08 -3.24 -0.01 2.12 16 14 C -0.11 -1.50 3.68 -88.83 -0.33 -1.83 16 15 H 0.09 1.08 7.88 -51.93 -0.41 0.67 16 16 C 0.10 1.31 4.72 -3.24 -0.02 1.29 16 17 N -0.61 -8.02 3.32 -171.47 -0.57 -8.59 16 18 C 0.54 6.99 7.22 -10.98 -0.08 6.91 16 19 O -0.54 -8.62 16.05 5.56 0.09 -8.53 16 20 C -0.11 -1.14 1.84 -91.54 -0.17 -1.31 16 21 H 0.11 0.95 7.83 -51.93 -0.41 0.54 16 22 C -0.10 -0.96 4.69 -26.42 -0.12 -1.09 16 23 C -0.04 -0.35 6.31 -27.62 -0.17 -0.53 16 24 C -0.03 -0.30 6.57 -81.73 -0.54 -0.84 16 25 C -0.03 -0.29 11.84 -17.95 -0.21 -0.50 16 26 N -0.50 -6.77 11.27 -14.87 -0.17 -6.94 16 27 C 0.19 2.23 12.66 -90.71 -1.15 1.08 16 28 N -0.45 -4.97 3.13 -114.06 -0.36 -5.32 16 29 C 0.11 1.08 5.93 -3.89 -0.02 1.06 16 30 C 0.12 1.74 6.15 -3.17 -0.02 1.72 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.96 7.51 -51.93 -0.39 0.57 16 35 H 0.03 0.51 7.87 -51.93 -0.41 0.10 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.03 0.60 6.16 -51.93 -0.32 0.28 16 38 H 0.07 1.33 5.14 -51.93 -0.27 1.06 16 39 H 0.08 1.20 6.97 -51.93 -0.36 0.84 16 40 H 0.07 0.71 6.79 -51.93 -0.35 0.36 16 41 H 0.09 0.82 7.77 -51.93 -0.40 0.42 16 42 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.21 1.87 8.06 -52.49 -0.42 1.44 16 47 H 0.09 0.98 8.12 -51.93 -0.42 0.55 16 48 H 0.10 0.99 5.51 -51.93 -0.29 0.71 16 49 H 0.08 1.05 7.64 -51.93 -0.40 0.65 16 50 H 0.08 1.25 7.39 -51.93 -0.38 0.87 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -32.47 376.75 -10.03 -42.50 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.82 Total: 1.50 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.97 Total: 2.15 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.87 Total: -60.22 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.14 Total: 16.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.47 -10.03 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091798035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.206 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds