Wall clock time and date at job start Wed Apr 1 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53787 * 111.85488 * 2 1 4 4 N 1.47213 * 106.37622 * 140.61473 * 3 2 1 5 5 C 1.36929 * 126.70371 * 148.74303 * 4 3 2 6 6 H 1.08002 * 120.00258 * 342.12982 * 5 4 3 7 7 C 1.38813 * 119.99955 * 162.12650 * 5 4 3 8 8 N 1.31625 * 120.00023 * 159.74868 * 7 5 4 9 9 Si 1.86795 * 120.00038 * 339.74867 * 7 5 4 10 10 H 1.48497 * 109.47288 * 84.68084 * 9 7 5 11 11 H 1.48503 * 109.47178 * 204.68516 * 9 7 5 12 12 H 1.48502 * 109.47288 * 324.68028 * 9 7 5 13 13 C 1.47217 * 106.59559 * 328.72266 * 4 3 2 14 14 C 1.53789 * 106.37549 * 31.27475 * 13 4 3 15 15 H 1.09001 * 112.59884 * 218.96762 * 14 13 4 16 16 C 1.53782 * 109.34706 * 93.96141 * 14 13 4 17 17 N 1.47215 * 106.42259 * 228.48937 * 16 14 13 18 18 C 1.34780 * 126.70125 * 211.27598 * 17 16 14 19 19 O 1.21279 * 119.99974 * 180.02562 * 18 17 16 20 20 C 1.50703 * 119.99719 * 0.02654 * 18 17 16 21 21 H 1.09006 * 109.43269 * 59.90364 * 20 18 17 22 22 C 1.53112 * 109.43015 * 179.76159 * 20 18 17 23 23 C 1.53491 * 109.30605 * 189.98759 * 22 20 18 24 24 C 1.50709 * 108.06014 * 311.30221 * 23 22 20 25 25 C 1.33865 * 128.67797 * 195.79471 * 24 23 22 26 26 N 1.34424 * 107.79600 * 179.84200 * 25 24 23 27 27 C 1.30785 * 109.32243 * 359.97438 * 26 25 24 28 28 N 1.34416 * 108.55631 * 0.06888 * 27 26 25 29 29 C 1.46469 * 128.44894 * 179.82266 * 28 27 26 30 30 C 1.47351 * 106.52545 * 31.27535 * 17 16 14 31 31 H 1.09000 * 109.47385 * 302.06076 * 1 2 3 32 32 H 1.09000 * 109.47663 * 62.06124 * 1 2 3 33 33 H 1.09005 * 109.47257 * 182.06466 * 1 2 3 34 34 H 1.09003 * 110.07123 * 259.84183 * 3 2 1 35 35 H 1.09000 * 110.07360 * 21.32610 * 3 2 1 36 36 H 0.96997 * 119.99786 * 179.97438 * 8 7 5 37 37 H 1.08997 * 110.07338 * 272.05121 * 13 4 3 38 38 H 1.09002 * 110.07820 * 150.49902 * 13 4 3 39 39 H 1.08998 * 110.07043 * 347.74520 * 16 14 13 40 40 H 1.08997 * 110.07387 * 109.23372 * 16 14 13 41 41 H 1.09007 * 109.50199 * 309.93795 * 22 20 18 42 42 H 1.09004 * 109.50216 * 70.03817 * 22 20 18 43 43 H 1.09005 * 109.74780 * 191.65941 * 23 22 20 44 44 H 1.08997 * 109.77970 * 70.96606 * 23 22 20 45 45 H 1.07996 * 126.10159 * 359.83828 * 25 24 23 46 46 H 1.07997 * 125.72812 * 180.02562 * 27 26 25 47 47 H 1.09002 * 109.59583 * 77.53658 * 29 28 27 48 48 H 1.08997 * 109.73147 * 317.13274 * 29 28 27 49 49 H 1.09003 * 110.06003 * 209.49130 * 30 17 16 50 50 H 1.09006 * 110.11885 * 87.99123 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4273 0.0000 4 7 3.2702 1.4062 0.8962 5 6 4.4001 2.1717 0.7863 6 1 4.6342 2.6579 -0.1493 7 6 5.2449 2.3229 1.8774 8 7 6.4929 2.6999 1.6962 9 14 4.6105 1.9913 3.6027 10 1 4.7123 0.5394 3.8971 11 1 5.4237 2.7536 4.5841 12 1 3.1912 2.4176 3.6988 13 6 2.9855 0.4016 1.9341 14 6 2.1092 -0.6728 1.2687 15 1 1.3242 -1.0412 1.9292 16 6 3.0039 -1.8118 0.7519 17 7 2.5856 -2.0729 -0.6352 18 6 2.6211 -3.2571 -1.2779 19 8 2.2446 -3.3343 -2.4282 20 6 3.1284 -4.4852 -0.5670 21 1 2.5104 -4.6779 0.3100 22 6 3.0575 -5.6871 -1.5130 23 6 3.3339 -6.9728 -0.7215 24 6 4.5759 -6.7555 0.1039 25 6 5.3451 -7.6659 0.7136 26 7 6.3456 -7.0124 1.3291 27 6 6.2181 -5.7280 1.1179 28 7 5.1270 -5.5255 0.3596 29 6 4.5802 -4.2577 -0.1295 30 6 2.1210 -0.7860 -1.1822 31 1 -0.3634 0.5455 0.8709 32 1 -0.3634 0.4815 -0.9079 33 1 -0.3634 -1.0270 0.0370 34 1 2.4093 1.7073 -1.0078 35 1 1.3566 2.1296 0.3723 36 1 7.0831 2.8059 2.4586 37 1 2.4481 0.8621 2.7630 38 1 3.9152 -0.0420 2.2905 39 1 4.0499 -1.5060 0.7760 40 1 2.8614 -2.7049 1.3601 41 1 2.0645 -5.7409 -1.9592 42 1 3.8046 -5.5761 -2.2990 43 1 3.4901 -7.8030 -1.4104 44 1 2.4903 -7.1915 -0.0669 45 1 5.1895 -8.7345 0.7114 46 1 6.8783 -4.9590 1.4908 47 1 5.1686 -3.9091 -0.9783 48 1 4.6091 -3.5132 0.6660 49 1 1.3551 -0.9560 -1.9389 50 1 2.9584 -0.2381 -1.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091798035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:58 Heat of formation + Delta-G solvation = 41.189827 kcal Electronic energy + Delta-G solvation = -31687.074669 eV Core-core repulsion = 27715.044155 eV Total energy + Delta-G solvation = -3972.030514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.36009 -41.86161 -40.20243 -37.29984 -36.77304 -34.66137 -33.96536 -33.19306 -31.90337 -31.70771 -29.02455 -28.00031 -27.50751 -27.14802 -25.71899 -24.12371 -23.27811 -22.45340 -22.37677 -20.71798 -20.36277 -19.88935 -18.73446 -18.18598 -18.15425 -17.43444 -16.92607 -16.73483 -16.36429 -16.11063 -15.62713 -15.53073 -15.14845 -14.94895 -14.91116 -14.84234 -14.66104 -14.27991 -14.17730 -13.95084 -13.93235 -13.58994 -13.51251 -13.19313 -13.05619 -12.86181 -12.72543 -12.61923 -12.34594 -12.19593 -12.07073 -12.01671 -11.88118 -11.58868 -11.48559 -11.28744 -11.13939 -10.91133 -10.80295 -10.55802 -9.82713 -9.29408 -9.08106 -8.15539 -5.43901 1.07973 1.29308 1.31642 1.42531 1.49883 1.69629 1.89589 2.17113 2.41708 3.04659 3.14433 3.22337 3.31536 3.39802 3.44879 3.60969 3.72677 3.73192 3.89187 3.99042 4.07398 4.10110 4.12976 4.18813 4.27027 4.33163 4.36426 4.42219 4.57964 4.62157 4.67140 4.72876 4.76516 4.80122 4.82720 4.86669 4.90960 4.94812 5.03728 5.07947 5.13681 5.15425 5.18983 5.29850 5.40785 5.42756 5.67503 5.79945 6.11336 6.20308 6.41085 6.74948 6.93741 7.08842 7.53441 8.12353 9.04276 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011317 B = 0.003782 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.620584 B = 7400.879704 C = 9082.352265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C 0.139 3.861 4 N -0.621 5.621 5 C -0.228 4.228 6 H 0.056 0.944 7 C -0.037 4.037 8 N -0.960 5.960 9 Si 0.945 3.055 10 H -0.261 1.261 11 H -0.315 1.315 12 H -0.265 1.265 13 C 0.108 3.892 14 C -0.097 4.097 15 H 0.126 0.874 16 C 0.105 3.895 17 N -0.608 5.608 18 C 0.540 3.460 19 O -0.569 6.569 20 C -0.104 4.104 21 H 0.129 0.871 22 C -0.101 4.101 23 C -0.036 4.036 24 C -0.026 4.026 25 C -0.045 4.045 26 N -0.532 5.532 27 C 0.177 3.823 28 N -0.454 5.454 29 C 0.111 3.889 30 C 0.125 3.875 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.185 0.815 46 H 0.222 0.778 47 H 0.082 0.918 48 H 0.111 0.889 49 H 0.082 0.918 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.234 -18.497 -1.641 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.075 4.075 3 C 0.013 3.987 4 N -0.346 5.346 5 C -0.356 4.356 6 H 0.074 0.926 7 C -0.231 4.231 8 N -0.607 5.607 9 Si 0.774 3.226 10 H -0.187 1.187 11 H -0.244 1.244 12 H -0.190 1.190 13 C -0.017 4.017 14 C -0.117 4.117 15 H 0.144 0.856 16 C -0.017 4.017 17 N -0.340 5.340 18 C 0.329 3.671 19 O -0.448 6.448 20 C -0.125 4.125 21 H 0.147 0.853 22 C -0.139 4.139 23 C -0.074 4.074 24 C -0.141 4.141 25 C -0.191 4.191 26 N -0.251 5.251 27 C -0.105 4.105 28 N -0.138 5.138 29 C -0.012 4.012 30 C 0.002 3.998 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.202 0.798 46 H 0.239 0.761 47 H 0.100 0.900 48 H 0.129 0.871 49 H 0.100 0.900 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.606 -18.739 -1.841 22.659 hybrid contribution 0.234 1.315 0.302 1.369 sum -12.372 -17.425 -1.539 21.425 Atomic orbital electron populations 1.21637 0.90259 1.02706 1.03002 1.22050 0.97271 0.94504 0.93704 1.21606 0.88320 0.94606 0.94122 1.44829 1.16559 1.42548 1.30682 1.18521 0.96664 1.24118 0.96328 0.92589 1.25600 0.95562 1.00505 1.01402 1.69954 1.05408 1.53911 1.31476 0.85995 0.77784 0.78114 0.80748 1.18651 1.24433 1.19015 1.21925 0.97602 0.90064 0.92130 1.22834 0.97643 0.94194 0.97037 0.85578 1.22411 0.98452 0.99283 0.81584 1.48637 1.62827 1.07845 1.14651 1.20229 0.77803 0.83161 0.85873 1.90705 1.50279 1.85365 1.18461 1.21541 0.95876 0.93563 1.01553 0.85280 1.21476 1.04118 0.91627 0.96668 1.20338 0.92073 0.97978 0.97044 1.21632 1.01369 0.84608 1.06459 1.22214 0.94207 1.00472 1.02257 1.70490 1.25621 1.04262 1.24731 1.25271 0.91620 0.95652 0.97989 1.45447 1.21942 1.07185 1.39180 1.22028 0.93571 0.84129 1.01478 1.22043 0.98488 0.83001 0.96249 0.91272 0.91499 0.91251 0.93803 0.94475 0.92970 0.95097 0.93035 0.92056 0.87409 0.89010 0.92288 0.87323 0.87757 0.79765 0.76127 0.89977 0.87137 0.89980 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.49 71.98 0.61 -1.58 16 2 C -0.07 -1.85 1.09 -51.02 -0.06 -1.91 16 3 C 0.14 4.72 6.20 86.51 0.54 5.26 16 4 N -0.62 -26.70 3.21 -695.30 -2.23 -28.93 16 5 C -0.23 -12.35 10.66 84.03 0.90 -11.46 16 6 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 7 C -0.04 -2.05 5.45 84.86 0.46 -1.58 16 8 N -0.96 -58.69 13.97 21.65 0.30 -58.39 16 9 Si 0.95 43.71 24.36 68.60 1.67 45.38 16 10 H -0.26 -10.88 6.36 99.48 0.63 -10.24 16 11 H -0.32 -15.20 7.11 99.48 0.71 -14.50 16 12 H -0.27 -11.73 6.49 99.48 0.65 -11.09 16 13 C 0.11 3.82 4.08 86.51 0.35 4.18 16 14 C -0.10 -2.39 3.68 -9.63 -0.04 -2.42 16 15 H 0.13 2.30 7.88 -2.39 -0.02 2.28 16 16 C 0.11 2.35 4.72 86.51 0.41 2.76 16 17 N -0.61 -14.62 3.32 -814.78 -2.70 -17.33 16 18 C 0.54 12.82 7.22 87.66 0.63 13.45 16 19 O -0.57 -17.43 16.05 -3.03 -0.05 -17.48 16 20 C -0.10 -1.76 1.84 -11.39 -0.02 -1.78 16 21 H 0.13 1.67 7.83 -2.38 -0.02 1.65 16 22 C -0.10 -1.59 4.69 30.80 0.14 -1.45 16 23 C -0.04 -0.45 6.31 30.02 0.19 -0.26 16 24 C -0.03 -0.49 6.57 40.73 0.27 -0.23 16 25 C -0.05 -0.97 11.84 83.30 0.99 0.01 16 26 N -0.53 -13.98 11.27 -200.96 -2.26 -16.24 16 27 C 0.18 3.97 12.66 180.38 2.28 6.25 16 28 N -0.45 -9.10 3.13 -514.78 -1.61 -10.71 16 29 C 0.11 2.01 5.93 86.49 0.51 2.52 16 30 C 0.12 3.37 6.15 86.48 0.53 3.90 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.04 1.56 7.51 -2.39 -0.02 1.55 16 35 H 0.04 1.23 7.87 -2.39 -0.02 1.21 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.03 1.12 6.16 -2.39 -0.01 1.11 16 38 H 0.05 1.98 5.14 -2.39 -0.01 1.96 16 39 H 0.06 1.68 6.97 -2.39 -0.02 1.66 16 40 H 0.11 1.64 6.79 -2.39 -0.02 1.63 16 41 H 0.09 1.44 7.77 -2.38 -0.02 1.42 16 42 H 0.06 1.13 8.12 -2.38 -0.02 1.11 16 43 H 0.11 1.01 8.14 -2.38 -0.02 1.00 16 44 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.22 3.84 8.06 -2.91 -0.02 3.82 16 47 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 48 H 0.11 1.86 5.51 -2.39 -0.01 1.85 16 49 H 0.08 2.13 7.64 -2.39 -0.02 2.11 16 50 H 0.05 1.60 7.39 -2.38 -0.02 1.59 16 Total: -1.00 -73.75 376.75 2.62 -71.12 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.81 Total: 16.91 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 8.70 Total: 15.67 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -8.51 Total: -131.60 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.48 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.67 Total: 45.38 kcal Total: -73.75 2.62 -71.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091798035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.314 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds