Wall clock time and date at job start Wed Apr 1 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53780 * 111.86344 * 2 1 4 4 N 1.47211 * 106.37666 * 140.60950 * 3 2 1 5 5 C 1.36947 * 126.70309 * 148.74733 * 4 3 2 6 6 H 1.08002 * 119.99328 * 342.10620 * 5 4 3 7 7 C 1.38799 * 119.99970 * 162.09872 * 5 4 3 8 8 N 1.31626 * 119.99916 * 159.75650 * 7 5 4 9 9 Si 1.86801 * 120.00568 * 339.76064 * 7 5 4 10 10 H 1.48497 * 109.47202 * 84.67614 * 9 7 5 11 11 H 1.48504 * 109.47370 * 204.68309 * 9 7 5 12 12 H 1.48502 * 109.46909 * 324.68000 * 9 7 5 13 13 C 1.47212 * 106.59947 * 328.72798 * 4 3 2 14 14 C 1.53788 * 106.37231 * 31.27482 * 13 4 3 15 15 H 1.09000 * 111.85217 * 218.42827 * 14 13 4 16 16 C 1.53785 * 109.34506 * 93.95973 * 14 13 4 17 17 N 1.47215 * 106.37383 * 228.51386 * 16 14 13 18 18 C 1.34769 * 126.69881 * 211.27379 * 17 16 14 19 19 O 1.21580 * 119.99842 * 180.02562 * 18 17 16 20 20 C 1.47710 * 120.00320 * 0.02562 * 18 17 16 21 21 N 1.32206 * 126.67635 * 359.97096 * 20 18 17 22 22 N 1.28842 * 110.14836 * 180.02562 * 21 20 18 23 23 H 0.97003 * 124.97886 * 179.97438 * 22 21 20 24 24 C 1.34316 * 110.04682 * 359.91878 * 22 21 20 25 25 C 1.35583 * 107.21031 * 0.14967 * 24 22 21 26 26 C 1.50382 * 124.61544 * 179.84112 * 25 24 22 27 27 C 1.53475 * 108.28439 * 343.70580 * 26 25 24 28 28 C 1.53108 * 109.50900 * 49.50394 * 27 26 25 29 29 C 1.50710 * 128.91053 * 180.18113 * 24 22 21 30 30 C 1.47214 * 106.59399 * 31.53031 * 17 16 14 31 31 H 1.09007 * 109.46994 * 302.06131 * 1 2 3 32 32 H 1.09001 * 109.47198 * 62.05870 * 1 2 3 33 33 H 1.08995 * 109.47303 * 182.06004 * 1 2 3 34 34 H 1.09000 * 110.06868 * 21.38255 * 3 2 1 35 35 H 1.09000 * 110.07404 * 259.84384 * 3 2 1 36 36 H 0.96993 * 119.99939 * 179.97438 * 8 7 5 37 37 H 1.08997 * 110.07595 * 272.04870 * 13 4 3 38 38 H 1.09002 * 110.12363 * 150.52849 * 13 4 3 39 39 H 1.08999 * 110.07184 * 109.28504 * 16 14 13 40 40 H 1.08993 * 110.07338 * 347.74193 * 16 14 13 41 41 H 1.08997 * 109.69674 * 224.00587 * 26 25 24 42 42 H 1.09004 * 109.69773 * 103.40704 * 26 25 24 43 43 H 1.08998 * 109.45849 * 169.51040 * 27 26 25 44 44 H 1.08993 * 109.46582 * 289.48954 * 27 26 25 45 45 H 1.08993 * 109.44411 * 50.00408 * 28 27 26 46 46 H 1.08997 * 109.43605 * 169.93859 * 28 27 26 47 47 H 1.09001 * 109.68731 * 43.58099 * 29 24 22 48 48 H 1.08998 * 109.72205 * 283.02486 * 29 24 22 49 49 H 1.09002 * 110.07157 * 87.70226 * 30 17 16 50 50 H 1.09003 * 110.07703 * 209.23592 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2702 1.4059 0.8963 5 6 4.4005 2.1714 0.7865 6 1 4.6347 2.6572 -0.1493 7 6 5.2448 2.3230 1.8776 8 7 6.4928 2.7000 1.6967 9 14 4.6100 1.9918 3.6030 10 1 4.7118 0.5399 3.8977 11 1 5.4228 2.7544 4.5844 12 1 3.1907 2.4179 3.6985 13 6 2.9855 0.4014 1.9341 14 6 2.1092 -0.6730 1.2686 15 1 1.3346 -1.0393 1.9424 16 6 3.0040 -1.8119 0.7518 17 7 2.5853 -2.0716 -0.6355 18 6 2.6201 -3.2552 -1.2791 19 8 2.2425 -3.3314 -2.4322 20 6 3.1171 -4.4598 -0.5836 21 7 3.5576 -4.5277 0.6611 22 7 3.9132 -5.7341 0.9408 23 1 4.2686 -6.0252 1.7951 24 6 3.7186 -6.5300 -0.1235 25 6 3.2146 -5.7562 -1.1163 26 6 2.8550 -6.2545 -2.4888 27 6 3.5201 -7.6223 -2.6940 28 6 3.2229 -8.5211 -1.4907 29 6 3.9845 -8.0069 -0.2624 30 6 2.1270 -0.7848 -1.1843 31 1 -0.3633 0.5456 0.8710 32 1 -0.3633 0.4815 -0.9079 33 1 -0.3633 -1.0269 0.0369 34 1 1.3571 2.1293 0.3733 35 1 2.4095 1.7072 -1.0077 36 1 7.0827 2.8063 2.4593 37 1 2.4481 0.8618 2.7631 38 1 3.9148 -0.0424 2.2915 39 1 2.8606 -2.7054 1.3594 40 1 4.0499 -1.5063 0.7759 41 1 3.2170 -5.5533 -3.2407 42 1 1.7728 -6.3559 -2.5710 43 1 3.1267 -8.0852 -3.5990 44 1 4.5976 -7.4912 -2.7921 45 1 2.1526 -8.5097 -1.2848 46 1 3.5389 -9.5404 -1.7124 47 1 3.6373 -8.5280 0.6298 48 1 5.0529 -8.1774 -0.3947 49 1 2.9684 -0.2396 -1.6119 50 1 1.3642 -0.9526 -1.9446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091814263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:38 Heat of formation + Delta-G solvation = 66.039472 kcal Electronic energy + Delta-G solvation = -31387.555912 eV Core-core repulsion = 27416.602959 eV Total energy + Delta-G solvation = -3970.952953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.95909 -40.20955 -38.25658 -37.16223 -35.04074 -33.05400 -32.56069 -31.36836 -30.22898 -30.14591 -29.74707 -26.81948 -26.05265 -25.52414 -24.01389 -23.51490 -22.38172 -21.92145 -20.67718 -19.31542 -19.08513 -18.73019 -17.89021 -16.77233 -16.45029 -16.22201 -15.72361 -15.33326 -14.93719 -14.65044 -14.52714 -14.11764 -13.99417 -13.77260 -13.47747 -13.41353 -13.33107 -13.07963 -12.78596 -12.62108 -12.40475 -12.34027 -12.01961 -11.94477 -11.66145 -11.24497 -11.17787 -11.10503 -10.96811 -10.88264 -10.81655 -10.59439 -10.44023 -10.25124 -9.93132 -9.92585 -9.78411 -9.41748 -9.39077 -8.77552 -8.74749 -8.33968 -7.07622 -5.92846 -3.24464 1.55854 1.96910 2.65290 3.22652 3.32652 3.47531 3.49280 3.52227 4.22435 4.34464 4.50014 4.54275 4.56900 4.73505 4.88418 4.91160 4.94168 5.02716 5.12199 5.18681 5.22635 5.29302 5.34278 5.44131 5.54174 5.59039 5.59363 5.65181 5.67842 5.80130 5.80836 5.87014 5.91947 6.07110 6.09213 6.11048 6.13539 6.20993 6.24560 6.32115 6.39435 6.43688 6.50210 6.55859 6.69545 6.73282 6.75762 6.89591 7.68136 7.69812 7.82006 8.32421 8.36041 8.82297 9.68649 10.19851 11.23308 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.003170 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.780479 B = 8830.426026 C = 9701.747865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 C 0.145 3.855 4 N -0.603 5.603 5 C -0.236 4.236 6 H 0.094 0.906 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.883 3.117 10 H -0.286 1.286 11 H -0.303 1.303 12 H -0.274 1.274 13 C 0.114 3.886 14 C -0.107 4.107 15 H 0.085 0.915 16 C 0.109 3.891 17 N -0.598 5.598 18 C 0.616 3.384 19 O -0.540 6.540 20 C 0.004 3.996 21 N -0.255 5.255 22 N -0.376 5.376 23 H 0.444 0.556 24 C 0.007 3.993 25 C -0.144 4.144 26 C -0.042 4.042 27 C -0.121 4.121 28 C -0.114 4.114 29 C -0.047 4.047 30 C 0.125 3.875 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.263 0.737 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 -22.954 -2.953 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 C 0.018 3.982 4 N -0.327 5.327 5 C -0.363 4.363 6 H 0.111 0.889 7 C -0.179 4.179 8 N -0.555 5.555 9 Si 0.714 3.286 10 H -0.213 1.213 11 H -0.231 1.231 12 H -0.199 1.199 13 C -0.012 4.012 14 C -0.128 4.128 15 H 0.104 0.896 16 C -0.014 4.014 17 N -0.329 5.329 18 C 0.403 3.597 19 O -0.416 6.416 20 C -0.156 4.156 21 N -0.091 5.091 22 N -0.089 5.089 23 H 0.288 0.712 24 C -0.120 4.120 25 C -0.154 4.154 26 C -0.080 4.080 27 C -0.159 4.159 28 C -0.152 4.152 29 C -0.086 4.086 30 C 0.003 3.997 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.096 0.904 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.772 -22.251 -2.659 24.065 hybrid contribution -0.010 -0.602 1.199 1.342 sum -8.782 -22.852 -1.459 24.525 Atomic orbital electron populations 1.21646 0.93226 1.01358 1.01942 1.22183 0.95227 0.97253 0.94166 1.21410 0.89448 0.91866 0.95429 1.44790 1.16598 1.42192 1.29167 1.18652 0.95404 1.24481 0.97744 0.88855 1.24965 0.95652 0.99578 0.97656 1.69820 1.03922 1.51279 1.30518 0.86990 0.78460 0.77061 0.86126 1.21285 1.23143 1.19949 1.21830 0.97436 0.89566 0.92386 1.22823 0.97641 0.95627 0.96665 0.89628 1.22445 0.99083 0.98525 0.81361 1.48324 1.62360 1.07454 1.14798 1.16436 0.78123 0.80256 0.84870 1.90759 1.49681 1.84866 1.16317 1.21545 1.07308 0.95078 0.91657 1.74003 1.16388 1.01803 1.16876 1.43085 1.46992 1.05156 1.13625 0.71205 1.21146 1.06533 0.95664 0.88685 1.19852 1.06489 0.91263 0.97791 1.19974 1.00545 0.95702 0.91759 1.21674 1.01180 0.95259 0.97784 1.21558 1.00627 0.99029 0.93985 1.20222 1.01498 0.87088 0.99754 1.22209 0.99257 0.82495 0.95749 0.92194 0.92330 0.92896 0.95361 0.92698 0.92750 0.95410 0.91623 0.89119 0.90534 0.89731 0.90703 0.91188 0.91667 0.91329 0.90961 0.90376 0.89914 0.90431 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 8.53 37.16 0.32 -1.33 16 2 C -0.09 -1.41 1.10 -152.55 -0.17 -1.58 16 3 C 0.14 2.80 6.19 -3.25 -0.02 2.78 16 4 N -0.60 -14.28 3.21 -171.13 -0.55 -14.83 16 5 C -0.24 -6.61 10.66 -15.06 -0.16 -6.78 16 6 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 7 C 0.02 0.57 5.45 -17.43 -0.09 0.47 16 8 N -0.91 -28.13 13.97 55.49 0.78 -27.35 16 9 Si 0.88 22.43 24.36 -169.99 -4.14 18.29 16 10 H -0.29 -6.93 6.36 56.52 0.36 -6.57 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.27 -6.83 6.49 56.52 0.37 -6.46 16 13 C 0.11 2.42 4.08 -3.24 -0.01 2.41 16 14 C -0.11 -1.84 3.66 -88.83 -0.32 -2.16 16 15 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 16 C 0.11 1.88 5.94 -3.24 -0.02 1.86 16 17 N -0.60 -10.42 3.32 -172.54 -0.57 -11.00 16 18 C 0.62 10.92 7.88 -12.39 -0.10 10.82 16 19 O -0.54 -10.40 16.03 5.30 0.08 -10.32 16 20 C 0.00 0.06 6.97 -82.99 -0.58 -0.52 16 21 N -0.25 -3.60 9.35 33.28 0.31 -3.28 16 22 N -0.38 -3.87 6.82 33.42 0.23 -3.64 16 23 H 0.44 2.88 8.96 -190.21 -1.71 1.18 16 24 C 0.01 0.07 7.12 -82.45 -0.59 -0.52 16 25 C -0.14 -1.86 5.99 -104.88 -0.63 -2.49 16 26 C -0.04 -0.47 5.54 -27.79 -0.15 -0.62 16 27 C -0.12 -0.94 5.91 -26.43 -0.16 -1.10 16 28 C -0.11 -0.70 5.89 -26.47 -0.16 -0.86 16 29 C -0.05 -0.29 6.31 -27.67 -0.17 -0.47 16 30 C 0.13 2.12 6.15 -3.08 -0.02 2.10 16 31 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.05 1.05 7.51 -51.93 -0.39 0.66 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.03 0.61 6.16 -51.93 -0.32 0.29 16 38 H 0.07 1.51 5.14 -51.93 -0.27 1.24 16 39 H 0.09 1.45 5.80 -51.93 -0.30 1.15 16 40 H 0.08 1.52 7.39 -51.93 -0.38 1.13 16 41 H 0.08 1.09 7.67 -51.93 -0.40 0.69 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 45 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 1.45 7.41 -51.93 -0.38 1.06 16 50 H 0.08 1.22 7.64 -51.93 -0.40 0.82 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -34.23 377.60 -10.43 -44.67 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -9.23 Total: -0.24 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.03 Total: 2.02 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.19 Total: -60.11 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.23 -10.43 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091814263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.705 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds