Wall clock time and date at job start Wed Apr 1 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53780 * 111.86344 * 2 1 4 4 N 1.47211 * 106.37666 * 140.60950 * 3 2 1 5 5 C 1.36947 * 126.70309 * 148.74733 * 4 3 2 6 6 H 1.08002 * 119.99328 * 342.10620 * 5 4 3 7 7 C 1.38799 * 119.99970 * 162.09872 * 5 4 3 8 8 N 1.31626 * 119.99916 * 159.75650 * 7 5 4 9 9 Si 1.86801 * 120.00568 * 339.76064 * 7 5 4 10 10 H 1.48497 * 109.47202 * 84.67614 * 9 7 5 11 11 H 1.48504 * 109.47370 * 204.68309 * 9 7 5 12 12 H 1.48502 * 109.46909 * 324.68000 * 9 7 5 13 13 C 1.47212 * 106.59947 * 328.72798 * 4 3 2 14 14 C 1.53788 * 106.37231 * 31.27482 * 13 4 3 15 15 H 1.09000 * 111.85217 * 218.42827 * 14 13 4 16 16 C 1.53785 * 109.34506 * 93.95973 * 14 13 4 17 17 N 1.47215 * 106.37383 * 228.51386 * 16 14 13 18 18 C 1.34769 * 126.69881 * 211.27379 * 17 16 14 19 19 O 1.21580 * 119.99842 * 180.02562 * 18 17 16 20 20 C 1.47710 * 120.00320 * 0.02562 * 18 17 16 21 21 N 1.32206 * 126.67635 * 359.97096 * 20 18 17 22 22 N 1.28842 * 110.14836 * 180.02562 * 21 20 18 23 23 H 0.97003 * 124.97886 * 179.97438 * 22 21 20 24 24 C 1.34316 * 110.04682 * 359.91878 * 22 21 20 25 25 C 1.35583 * 107.21031 * 0.14967 * 24 22 21 26 26 C 1.50382 * 124.61544 * 179.84112 * 25 24 22 27 27 C 1.53475 * 108.28439 * 343.70580 * 26 25 24 28 28 C 1.53108 * 109.50900 * 49.50394 * 27 26 25 29 29 C 1.50710 * 128.91053 * 180.18113 * 24 22 21 30 30 C 1.47214 * 106.59399 * 31.53031 * 17 16 14 31 31 H 1.09007 * 109.46994 * 302.06131 * 1 2 3 32 32 H 1.09001 * 109.47198 * 62.05870 * 1 2 3 33 33 H 1.08995 * 109.47303 * 182.06004 * 1 2 3 34 34 H 1.09000 * 110.06868 * 21.38255 * 3 2 1 35 35 H 1.09000 * 110.07404 * 259.84384 * 3 2 1 36 36 H 0.96993 * 119.99939 * 179.97438 * 8 7 5 37 37 H 1.08997 * 110.07595 * 272.04870 * 13 4 3 38 38 H 1.09002 * 110.12363 * 150.52849 * 13 4 3 39 39 H 1.08999 * 110.07184 * 109.28504 * 16 14 13 40 40 H 1.08993 * 110.07338 * 347.74193 * 16 14 13 41 41 H 1.08997 * 109.69674 * 224.00587 * 26 25 24 42 42 H 1.09004 * 109.69773 * 103.40704 * 26 25 24 43 43 H 1.08998 * 109.45849 * 169.51040 * 27 26 25 44 44 H 1.08993 * 109.46582 * 289.48954 * 27 26 25 45 45 H 1.08993 * 109.44411 * 50.00408 * 28 27 26 46 46 H 1.08997 * 109.43605 * 169.93859 * 28 27 26 47 47 H 1.09001 * 109.68731 * 43.58099 * 29 24 22 48 48 H 1.08998 * 109.72205 * 283.02486 * 29 24 22 49 49 H 1.09002 * 110.07157 * 87.70226 * 30 17 16 50 50 H 1.09003 * 110.07703 * 209.23592 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2702 1.4059 0.8963 5 6 4.4005 2.1714 0.7865 6 1 4.6347 2.6572 -0.1493 7 6 5.2448 2.3230 1.8776 8 7 6.4928 2.7000 1.6967 9 14 4.6100 1.9918 3.6030 10 1 4.7118 0.5399 3.8977 11 1 5.4228 2.7544 4.5844 12 1 3.1907 2.4179 3.6985 13 6 2.9855 0.4014 1.9341 14 6 2.1092 -0.6730 1.2686 15 1 1.3346 -1.0393 1.9424 16 6 3.0040 -1.8119 0.7518 17 7 2.5853 -2.0716 -0.6355 18 6 2.6201 -3.2552 -1.2791 19 8 2.2425 -3.3314 -2.4322 20 6 3.1171 -4.4598 -0.5836 21 7 3.5576 -4.5277 0.6611 22 7 3.9132 -5.7341 0.9408 23 1 4.2686 -6.0252 1.7951 24 6 3.7186 -6.5300 -0.1235 25 6 3.2146 -5.7562 -1.1163 26 6 2.8550 -6.2545 -2.4888 27 6 3.5201 -7.6223 -2.6940 28 6 3.2229 -8.5211 -1.4907 29 6 3.9845 -8.0069 -0.2624 30 6 2.1270 -0.7848 -1.1843 31 1 -0.3633 0.5456 0.8710 32 1 -0.3633 0.4815 -0.9079 33 1 -0.3633 -1.0269 0.0369 34 1 1.3571 2.1293 0.3733 35 1 2.4095 1.7072 -1.0077 36 1 7.0827 2.8063 2.4593 37 1 2.4481 0.8618 2.7631 38 1 3.9148 -0.0424 2.2915 39 1 2.8606 -2.7054 1.3594 40 1 4.0499 -1.5063 0.7759 41 1 3.2170 -5.5533 -3.2407 42 1 1.7728 -6.3559 -2.5710 43 1 3.1267 -8.0852 -3.5990 44 1 4.5976 -7.4912 -2.7921 45 1 2.1526 -8.5097 -1.2848 46 1 3.5389 -9.5404 -1.7124 47 1 3.6373 -8.5280 0.6298 48 1 5.0529 -8.1774 -0.3947 49 1 2.9684 -0.2396 -1.6119 50 1 1.3642 -0.9526 -1.9446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091814263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:37 Heat of formation + Delta-G solvation = 42.963319 kcal Electronic energy + Delta-G solvation = -31388.556569 eV Core-core repulsion = 27416.602959 eV Total energy + Delta-G solvation = -3971.953610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.89774 -41.64872 -39.70350 -37.84397 -36.69454 -34.63704 -33.70610 -33.04834 -31.84769 -30.94202 -30.57657 -28.08160 -27.77970 -27.11866 -24.92439 -24.63516 -23.51345 -23.02532 -22.38458 -20.58300 -20.11505 -19.93955 -18.82127 -18.69734 -17.69351 -17.52932 -17.04843 -16.78438 -16.39362 -16.05375 -15.55797 -15.49388 -15.08630 -14.86785 -14.68613 -14.60746 -14.33570 -14.17628 -14.08710 -13.97572 -13.91536 -13.54830 -13.44330 -13.18898 -12.98830 -12.87882 -12.61778 -12.37972 -12.09999 -11.90306 -11.85448 -11.74571 -11.69246 -11.60569 -11.59852 -11.33000 -11.28396 -11.13595 -10.83847 -10.42337 -9.79875 -9.61815 -9.08862 -8.16722 -5.44718 0.43093 1.06160 1.29614 1.39232 1.47996 1.70207 2.07708 2.25049 2.41533 3.03325 3.16048 3.31826 3.39797 3.56248 3.62580 3.73695 3.83802 4.04769 4.13355 4.15128 4.18999 4.23361 4.29668 4.34540 4.42179 4.59117 4.64134 4.66455 4.69610 4.71984 4.74778 4.79900 4.86048 4.87569 4.98167 5.00816 5.06351 5.07629 5.13839 5.14818 5.20834 5.25117 5.30900 5.33105 5.42867 5.48663 5.50717 5.66439 6.10328 6.11247 6.39925 6.73295 6.74955 7.03873 7.52261 8.12009 9.03326 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.003170 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.780479 B = 8830.426026 C = 9701.747865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C 0.141 3.859 4 N -0.622 5.622 5 C -0.227 4.227 6 H 0.058 0.942 7 C -0.041 4.041 8 N -0.962 5.962 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.310 1.310 12 H -0.261 1.261 13 C 0.111 3.889 14 C -0.097 4.097 15 H 0.122 0.878 16 C 0.118 3.882 17 N -0.601 5.601 18 C 0.611 3.389 19 O -0.565 6.565 20 C -0.030 4.030 21 N -0.275 5.275 22 N -0.358 5.358 23 H 0.461 0.539 24 C 0.030 3.970 25 C -0.170 4.170 26 C -0.042 4.042 27 C -0.117 4.117 28 C -0.111 4.111 29 C -0.045 4.045 30 C 0.125 3.875 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.261 0.739 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.049 0.951 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 -26.538 -1.183 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.075 4.075 3 C 0.015 3.985 4 N -0.347 5.347 5 C -0.355 4.355 6 H 0.075 0.925 7 C -0.235 4.235 8 N -0.609 5.609 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.239 1.239 12 H -0.186 1.186 13 C -0.015 4.015 14 C -0.118 4.118 15 H 0.140 0.860 16 C -0.005 4.005 17 N -0.332 5.332 18 C 0.400 3.600 19 O -0.443 6.443 20 C -0.188 4.188 21 N -0.112 5.112 22 N -0.073 5.073 23 H 0.309 0.691 24 C -0.099 4.099 25 C -0.180 4.180 26 C -0.080 4.080 27 C -0.155 4.155 28 C -0.149 4.149 29 C -0.084 4.084 30 C 0.003 3.997 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.126 0.874 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.119 0.881 49 H 0.067 0.933 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.980 -25.858 -0.880 28.106 hybrid contribution 0.717 0.467 0.512 0.997 sum -10.262 -25.391 -0.368 27.389 Atomic orbital electron populations 1.21621 0.89917 1.02522 1.03348 1.22134 0.97495 0.94644 0.93213 1.21612 0.88321 0.94310 0.94208 1.44846 1.16766 1.42427 1.30703 1.18547 0.96750 1.23830 0.96371 0.92466 1.25642 0.95620 1.00584 1.01670 1.69963 1.05352 1.54121 1.31458 0.85936 0.78084 0.77745 0.80627 1.19390 1.23918 1.18569 1.21907 0.97363 0.89934 0.92250 1.22842 0.97599 0.94174 0.97138 0.86040 1.22293 0.97225 0.99297 0.81651 1.48379 1.62454 1.07544 1.14864 1.16852 0.77559 0.80889 0.84730 1.90726 1.50805 1.85410 1.17359 1.21399 1.09454 0.95186 0.92752 1.73859 1.17226 1.03702 1.16440 1.43178 1.45446 1.04166 1.14529 0.69061 1.21716 1.03703 0.97200 0.87251 1.20172 1.07766 0.90815 0.99251 1.19961 1.00452 0.97177 0.90390 1.21665 1.00689 0.93550 0.99561 1.21583 1.00614 0.99872 0.92853 1.20476 1.02755 0.84048 1.01119 1.22157 0.98547 0.82507 0.96514 0.90880 0.90955 0.91792 0.93783 0.93539 0.92970 0.94631 0.93677 0.87417 0.93937 0.92595 0.91254 0.89891 0.91806 0.91569 0.88177 0.87428 0.88138 0.93259 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 8.53 71.98 0.61 -2.08 16 2 C -0.07 -2.27 1.10 -50.91 -0.06 -2.33 16 3 C 0.14 5.38 6.19 86.51 0.54 5.92 16 4 N -0.62 -29.77 3.21 -695.34 -2.23 -32.00 16 5 C -0.23 -13.21 10.66 84.03 0.90 -12.31 16 6 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 7 C -0.04 -2.47 5.45 84.86 0.46 -2.01 16 8 N -0.96 -61.87 13.97 21.65 0.30 -61.57 16 9 Si 0.95 46.86 24.36 68.60 1.67 48.53 16 10 H -0.27 -12.36 6.36 99.48 0.63 -11.73 16 11 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 12 H -0.26 -12.22 6.49 99.48 0.65 -11.58 16 13 C 0.11 4.58 4.08 86.51 0.35 4.94 16 14 C -0.10 -3.16 3.66 -9.63 -0.04 -3.19 16 15 H 0.12 3.16 7.92 -2.39 -0.02 3.14 16 16 C 0.12 4.05 5.94 86.51 0.51 4.56 16 17 N -0.60 -21.20 3.32 -818.05 -2.71 -23.91 16 18 C 0.61 22.18 7.88 86.75 0.68 22.86 16 19 O -0.56 -22.59 16.03 -3.97 -0.06 -22.65 16 20 C -0.03 -0.94 6.97 42.14 0.29 -0.65 16 21 N -0.27 -7.49 9.35 -48.62 -0.45 -7.94 16 22 N -0.36 -6.54 6.82 -48.18 -0.33 -6.87 16 23 H 0.46 4.58 8.96 -219.80 -1.97 2.61 16 24 C 0.03 0.52 7.12 41.57 0.30 0.82 16 25 C -0.17 -4.29 5.99 -20.03 -0.12 -4.41 16 26 C -0.04 -0.93 5.54 29.91 0.17 -0.77 16 27 C -0.12 -1.60 5.91 30.79 0.18 -1.42 16 28 C -0.11 -0.96 5.89 30.77 0.18 -0.77 16 29 C -0.05 -0.37 6.31 29.99 0.19 -0.18 16 30 C 0.13 4.29 6.15 86.62 0.53 4.82 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.58 7.87 -2.39 -0.02 1.56 16 35 H 0.05 1.83 7.51 -2.39 -0.02 1.81 16 36 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 37 H 0.04 1.45 6.16 -2.39 -0.01 1.44 16 38 H 0.05 2.05 5.14 -2.39 -0.01 2.04 16 39 H 0.11 3.32 5.80 -2.39 -0.01 3.31 16 40 H 0.04 1.74 7.39 -2.39 -0.02 1.72 16 41 H 0.06 1.53 7.67 -2.39 -0.02 1.51 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 45 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 46 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.05 1.94 7.41 -2.39 -0.02 1.93 16 50 H 0.09 2.77 7.64 -2.39 -0.02 2.75 16 Total: -1.00 -79.32 377.60 0.73 -78.59 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -1.14 Total: 14.03 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 5.69 Total: 13.80 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -5.43 Total: -132.30 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.06 Total: -22.65 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal Total: -79.32 0.73 -78.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091814263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.551 kcal (2) G-P(sol) polarization free energy of solvation -79.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds