Wall clock time and date at job start Wed Apr 1 2020 03:05:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.54456 * 112.29726 * 2 1
4 4 N 1.48328 * 104.32695 * 97.55479 * 3 2 1
5 5 C 1.36932 * 128.19808 * 221.81143 * 4 3 2
6 6 H 1.08000 * 120.00326 * 15.92523 * 5 4 3
7 7 C 1.38817 * 119.99652 * 195.92721 * 5 4 3
8 8 N 1.31620 * 119.99850 * 199.60995 * 7 5 4
9 9 Si 1.86793 * 120.00270 * 19.61546 * 7 5 4
10 10 H 1.48499 * 109.47315 * 264.69784 * 9 7 5
11 11 H 1.48508 * 109.47516 * 144.69815 * 9 7 5
12 12 H 1.48501 * 109.47277 * 24.70079 * 9 7 5
13 13 C 1.48340 * 103.60369 * 42.06428 * 4 3 2
14 14 C 1.54879 * 104.11277 * 317.90155 * 13 4 3
15 15 H 1.09003 * 112.91291 * 262.97013 * 14 13 4
16 16 C 1.53745 * 108.86001 * 137.56282 * 14 13 4
17 17 N 1.47193 * 106.42931 * 229.56637 * 16 14 13
18 18 C 1.34780 * 126.70691 * 211.40390 * 17 16 14
19 19 O 1.21275 * 120.00101 * 184.71856 * 18 17 16
20 20 C 1.50698 * 119.99360 * 4.71611 * 18 17 16
21 21 H 1.08998 * 109.68075 * 335.50124 * 20 18 17
22 22 C 1.53404 * 109.68124 * 96.05996 * 20 18 17
23 23 C 1.53097 * 109.45145 * 169.35187 * 22 20 18
24 24 C 1.53351 * 109.54102 * 289.99383 * 23 22 20
25 25 C 1.50867 * 108.41144 * 49.97027 * 24 23 22
26 26 N 1.33571 * 128.03086 * 163.23820 * 25 24 23
27 27 C 1.30752 * 109.14614 * 180.16325 * 26 25 24
28 28 N 1.35309 * 108.76670 * 359.97438 * 27 26 25
29 29 H 0.97003 * 126.49720 * 179.97438 * 28 27 26
30 30 C 1.35026 * 123.98664 * 343.35030 * 25 24 23
31 31 C 1.47199 * 106.59409 * 31.37080 * 17 16 14
32 32 H 1.09004 * 109.46823 * 61.01472 * 1 2 3
33 33 H 1.08998 * 109.46692 * 181.01258 * 1 2 3
34 34 H 1.08995 * 109.47604 * 301.01784 * 1 2 3
35 35 H 1.08995 * 110.46386 * 338.83710 * 3 2 1
36 36 H 1.09010 * 110.56742 * 216.31654 * 3 2 1
37 37 H 0.97003 * 119.99728 * 4.75891 * 8 7 5
38 38 H 1.08993 * 110.46187 * 76.64149 * 13 4 3
39 39 H 1.08996 * 110.46223 * 199.23129 * 13 4 3
40 40 H 1.09005 * 110.06562 * 110.32644 * 16 14 13
41 41 H 1.08997 * 110.06502 * 348.81130 * 16 14 13
42 42 H 1.08999 * 109.47123 * 289.35112 * 22 20 18
43 43 H 1.09000 * 109.47193 * 49.36551 * 22 20 18
44 44 H 1.09000 * 109.46148 * 169.97249 * 23 22 20
45 45 H 1.09000 * 109.44071 * 50.00976 * 23 22 20
46 46 H 1.09002 * 109.67627 * 290.23957 * 24 23 22
47 47 H 1.09000 * 109.70716 * 169.71693 * 24 23 22
48 48 H 1.08001 * 125.61403 * 179.97438 * 27 26 25
49 49 H 1.09003 * 110.06514 * 209.39118 * 31 17 16
50 50 H 1.08995 * 110.11393 * 87.89562 * 31 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1160 1.4291 0.0000
4 7 2.4301 1.6970 1.4247
5 6 2.2221 2.8487 2.1355
6 1 1.5570 3.6079 1.7512
7 6 2.8661 3.0404 3.3502
8 7 2.4021 3.9234 4.2090
9 14 4.3913 2.0454 3.7660
10 1 4.0041 0.8582 4.5697
11 1 5.3332 2.8864 4.5477
12 1 5.0495 1.6006 2.5113
13 6 3.0287 0.4239 1.8954
14 6 2.1337 -0.6707 1.2632
15 1 1.3671 -1.0383 1.9453
16 6 3.0309 -1.8001 0.7311
17 7 2.5950 -2.0625 -0.6501
18 6 2.6296 -3.2456 -1.2948
19 8 2.3180 -3.3077 -2.4652
20 6 3.0555 -4.4911 -0.5612
21 1 3.6881 -4.2210 0.2842
22 6 1.8167 -5.2449 -0.0605
23 6 2.2320 -6.6289 0.4453
24 6 2.6505 -7.5047 -0.7420
25 6 3.6382 -6.7311 -1.5799
26 7 4.4755 -7.2010 -2.5084
27 6 5.1678 -6.2084 -3.0034
28 7 4.7833 -5.0630 -2.3943
29 1 5.1309 -4.1737 -2.5653
30 6 3.8161 -5.3952 -1.4959
31 6 2.1131 -0.7804 -1.1895
32 1 -0.3633 0.4980 -0.8990
33 1 -0.3633 -1.0275 0.0182
34 1 -0.3634 0.5295 0.8806
35 1 1.3795 2.1430 -0.3687
36 1 3.0222 1.4714 -0.6045
37 1 1.5722 4.3902 4.0238
38 1 4.0552 0.3316 1.5410
39 1 2.9932 0.3655 2.9832
40 1 2.9050 -2.6958 1.3395
41 1 4.0742 -1.4848 0.7405
42 1 1.3543 -4.6846 0.7520
43 1 1.1038 -5.3555 -0.8776
44 1 1.3921 -7.0940 0.9613
45 1 3.0702 -6.5268 1.1346
46 1 1.7748 -7.7523 -1.3420
47 1 3.1163 -8.4201 -0.3773
48 1 5.9223 -6.2894 -3.7719
49 1 1.3392 -0.9563 -1.9367
50 1 2.9402 -0.2252 -1.6317
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001092004058.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:05:29
Heat of formation + Delta-G solvation = 28.241034 kcal
Electronic energy + Delta-G solvation = -31422.883304 eV
Core-core repulsion = 27450.291288 eV
Total energy + Delta-G solvation = -3972.592016 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.32632 -41.70818 -39.96735 -37.37583 -36.76675 -34.64558 -34.10091 -33.05261
-31.68609 -31.12264 -29.90573 -28.12965 -27.42357 -26.95936 -25.03869 -23.55176
-23.17563 -22.66041 -22.50481 -20.66374 -20.19037 -19.84436 -19.30881 -18.62639
-18.25945 -17.25924 -16.69919 -16.44346 -16.10443 -15.92973 -15.80845 -15.55961
-15.35932 -15.14333 -14.94648 -14.57887 -14.51543 -14.33607 -14.22667 -13.84071
-13.55253 -13.48939 -13.20552 -13.01414 -12.95322 -12.71116 -12.64456 -12.31524
-12.10510 -11.96726 -11.86113 -11.81556 -11.65160 -11.62892 -11.31654 -11.17892
-11.08564 -10.83134 -10.81670 -10.67471 -9.80952 -9.13462 -9.12215 -8.62998
-5.44535 1.01914 1.40288 1.42577 1.57793 1.72567 1.86004 2.15057
2.19970 2.58825 3.08623 3.18266 3.27558 3.44612 3.56398 3.69679
3.75061 3.81874 3.86609 4.04786 4.10590 4.16499 4.22122 4.24499
4.31728 4.36675 4.40658 4.51394 4.60924 4.63823 4.68968 4.72366
4.76144 4.81749 4.88026 4.92588 4.95729 5.00551 5.06601 5.11223
5.14964 5.18421 5.20613 5.27408 5.31024 5.37212 5.41880 5.58178
5.79676 6.09652 6.41249 6.49831 6.80524 6.98604 7.11173 7.42728
8.19213 8.88914
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.018118 B = 0.002873 C = 0.002785
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1545.057336 B = 9744.574107 C =10053.036443
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.076 4.076
3 C 0.134 3.866
4 N -0.628 5.628
5 C -0.301 4.301
6 H 0.040 0.960
7 C -0.078 4.078
8 N -0.963 5.963
9 Si 1.097 2.903
10 H -0.270 1.270
11 H -0.314 1.314
12 H -0.252 1.252
13 C 0.107 3.893
14 C -0.100 4.100
15 H 0.100 0.900
16 C 0.104 3.896
17 N -0.607 5.607
18 C 0.534 3.466
19 O -0.575 6.575
20 C -0.020 4.020
21 H 0.126 0.874
22 C -0.101 4.101
23 C -0.106 4.106
24 C -0.038 4.038
25 C -0.010 4.010
26 N -0.527 5.527
27 C 0.183 3.817
28 N -0.551 5.551
29 H 0.427 0.573
30 C -0.020 4.020
31 C 0.122 3.878
32 H 0.060 0.940
33 H 0.066 0.934
34 H 0.042 0.958
35 H 0.042 0.958
36 H 0.041 0.959
37 H 0.247 0.753
38 H 0.055 0.945
39 H 0.052 0.948
40 H 0.113 0.887
41 H 0.085 0.915
42 H 0.098 0.902
43 H 0.057 0.943
44 H 0.099 0.901
45 H 0.079 0.921
46 H 0.071 0.929
47 H 0.082 0.918
48 H 0.242 0.758
49 H 0.074 0.926
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.150 -22.801 -9.669 24.966
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.078 4.078
3 C 0.009 3.991
4 N -0.353 5.353
5 C -0.430 4.430
6 H 0.058 0.942
7 C -0.271 4.271
8 N -0.607 5.607
9 Si 0.923 3.077
10 H -0.197 1.197
11 H -0.243 1.243
12 H -0.177 1.177
13 C -0.018 4.018
14 C -0.120 4.120
15 H 0.119 0.881
16 C -0.018 4.018
17 N -0.339 5.339
18 C 0.324 3.676
19 O -0.455 6.455
20 C -0.042 4.042
21 H 0.143 0.857
22 C -0.140 4.140
23 C -0.144 4.144
24 C -0.076 4.076
25 C -0.140 4.140
26 N -0.246 5.246
27 C -0.100 4.100
28 N -0.152 5.152
29 H 0.266 0.734
30 C -0.137 4.137
31 C -0.001 4.001
32 H 0.079 0.921
33 H 0.085 0.915
34 H 0.062 0.938
35 H 0.061 0.939
36 H 0.059 0.941
37 H 0.056 0.944
38 H 0.072 0.928
39 H 0.070 0.930
40 H 0.131 0.869
41 H 0.103 0.897
42 H 0.117 0.883
43 H 0.076 0.924
44 H 0.117 0.883
45 H 0.098 0.902
46 H 0.090 0.910
47 H 0.101 0.899
48 H 0.258 0.742
49 H 0.092 0.908
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 4.204 -23.836 -9.416 25.971
hybrid contribution -1.332 2.660 -1.221 3.216
sum 2.873 -21.175 -10.637 23.870
Atomic orbital electron populations
1.21531 0.92430 1.01772 1.01548 1.22200 0.96432 0.95092 0.94108
1.22050 0.97295 0.94089 0.85711 1.45490 1.72957 1.09625 1.07237
1.19914 1.23728 0.96349 1.02970 0.94194 1.27237 1.06020 1.00936
0.92877 1.70985 1.22928 1.30464 1.36324 0.83469 0.73586 0.74197
0.76486 1.19674 1.24341 1.17682 1.22586 0.95889 0.85281 0.98081
1.23055 0.97881 0.94458 0.96646 0.88129 1.22449 0.98574 0.99412
0.81401 1.48655 1.62227 1.07700 1.15330 1.20582 0.77132 0.83521
0.86395 1.90713 1.50901 1.86048 1.17792 1.19937 0.98444 0.89711
0.96125 0.85655 1.21557 0.94007 0.96869 1.01523 1.21575 1.02961
0.93201 0.96683 1.20068 0.95221 0.97617 0.94704 1.20939 1.01403
0.91320 1.00296 1.69976 1.09985 1.32244 1.12409 1.25707 1.02901
0.79756 1.01587 1.42947 1.30262 1.11718 1.30288 0.73449 1.20478
0.97821 0.95851 0.99564 1.22042 0.98931 0.83502 0.95609 0.92074
0.91524 0.93836 0.93892 0.94101 0.94386 0.92751 0.93000 0.86898
0.89694 0.88304 0.92406 0.88290 0.90201 0.91039 0.89927 0.74237
0.90800 0.91026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.02 8.61 71.98 0.62 -2.40 16
2 C -0.08 -2.07 1.08 -50.67 -0.05 -2.12 16
3 C 0.13 4.73 6.37 86.52 0.55 5.28 16
4 N -0.63 -27.64 3.21 -686.08 -2.20 -29.85 16
5 C -0.30 -16.62 10.65 84.04 0.89 -15.73 16
6 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16
7 C -0.08 -4.44 5.48 84.86 0.46 -3.97 16
8 N -0.96 -60.37 13.70 21.65 0.30 -60.07 16
9 Si 1.10 49.56 24.96 68.60 1.71 51.27 16
10 H -0.27 -11.03 6.78 99.48 0.67 -10.36 16
11 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16
12 H -0.25 -10.01 5.78 99.48 0.58 -9.43 16
13 C 0.11 3.74 4.24 86.67 0.37 4.10 16
14 C -0.10 -2.58 3.77 -9.13 -0.03 -2.62 16
15 H 0.10 2.50 7.95 -2.39 -0.02 2.48 16
16 C 0.10 1.91 6.13 86.50 0.53 2.44 16
17 N -0.61 -12.84 3.32 -815.37 -2.71 -15.55 16
18 C 0.53 12.05 6.81 87.66 0.60 12.65 16
19 O -0.58 -17.62 16.71 -3.01 -0.05 -17.67 16
20 C -0.02 -0.34 2.44 -12.17 -0.03 -0.37 16
21 H 0.13 1.53 6.66 -2.39 -0.02 1.52 16
22 C -0.10 -1.44 5.21 30.76 0.16 -1.28 16
23 C -0.11 -1.21 5.89 30.74 0.18 -1.03 16
24 C -0.04 -0.63 6.30 30.02 0.19 -0.44 16
25 C -0.01 -0.22 6.98 41.61 0.29 0.07 16
26 N -0.53 -12.87 11.25 -187.90 -2.11 -14.98 16
27 C 0.18 3.37 13.05 180.10 2.35 5.72 16
28 N -0.55 -10.10 6.05 -186.45 -1.13 -11.23 16
29 H 0.43 6.24 8.96 -92.71 -0.83 5.41 16
30 C -0.02 -0.40 5.91 41.14 0.24 -0.16 16
31 C 0.12 2.95 6.19 86.50 0.54 3.48 16
32 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16
33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
35 H 0.04 1.59 7.91 -2.39 -0.02 1.57 16
36 H 0.04 1.37 7.17 -2.38 -0.02 1.35 16
37 H 0.25 15.66 8.73 -92.71 -0.81 14.85 16
38 H 0.05 1.78 5.87 -2.39 -0.01 1.76 16
39 H 0.05 1.97 4.96 -2.39 -0.01 1.96 16
40 H 0.11 1.34 6.93 -2.38 -0.02 1.33 16
41 H 0.08 1.47 7.10 -2.39 -0.02 1.46 16
42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
43 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16
44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16
45 H 0.08 0.78 8.11 -2.39 -0.02 0.76 16
46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
47 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
48 H 0.24 2.25 8.06 -2.91 -0.02 2.23 16
49 H 0.07 1.87 7.66 -2.39 -0.02 1.85 16
50 H 0.07 1.73 7.11 -2.39 -0.02 1.72 16
Total: -1.00 -77.86 380.32 1.60 -76.26
By element:
Atomic # 1 Polarization: 18.25 SS G_CDS: -0.07 Total: 18.18 kcal
Atomic # 6 Polarization: -4.22 SS G_CDS: 7.86 Total: 3.64 kcal
Atomic # 7 Polarization: -123.82 SS G_CDS: -7.85 Total: -131.67 kcal
Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal
Atomic # 14 Polarization: 49.56 SS G_CDS: 1.71 Total: 51.27 kcal
Total: -77.86 1.60 -76.26 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001092004058.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.504 kcal
(2) G-P(sol) polarization free energy of solvation -77.858 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.263 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.241 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds