Wall clock time and date at job start Wed Apr 1 2020 03:06:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.34943 * 126.03811 * 2 1
4 4 C 1.35318 * 107.74487 * 180.14422 * 3 2 1
5 5 C 1.50702 * 126.03887 * 179.87295 * 4 3 2
6 6 H 1.08999 * 115.55057 * 334.04398 * 5 4 3
7 7 C 1.53067 * 117.51266 * 188.32672 * 5 4 3
8 8 C 1.52997 * 117.49832 * 119.71637 * 5 4 3
9 9 H 1.08995 * 117.49723 * 359.97438 * 8 5 4
10 10 C 1.50701 * 117.49917 * 214.99995 * 8 5 4
11 11 O 1.21285 * 120.00083 * 0.09664 * 10 8 5
12 12 N 1.34778 * 120.00278 * 180.08526 * 10 8 5
13 13 C 1.47195 * 126.69873 * 359.97438 * 12 10 8
14 14 C 1.53745 * 106.42705 * 211.36712 * 13 12 10
15 15 H 1.09004 * 112.28327 * 103.79469 * 14 13 12
16 16 C 1.54810 * 109.36639 * 229.34662 * 14 13 12
17 17 N 1.48342 * 104.14664 * 137.74247 * 16 14 13
18 18 C 1.36936 * 128.20041 * 138.19491 * 17 16 14
19 19 H 1.07998 * 119.99716 * 343.80033 * 18 17 16
20 20 C 1.38804 * 119.99727 * 163.80196 * 18 17 16
21 21 N 1.31622 * 120.00247 * 350.53652 * 20 18 17
22 22 Si 1.86810 * 119.99877 * 170.53606 * 20 18 17
23 23 H 1.48493 * 109.47005 * 90.00021 * 22 20 18
24 24 H 1.48501 * 109.47040 * 209.99959 * 22 20 18
25 25 H 1.48500 * 109.46752 * 329.99813 * 22 20 18
26 26 C 1.48334 * 103.59936 * 317.93660 * 17 16 14
27 27 C 1.54453 * 104.32223 * 42.02724 * 26 17 16
28 28 C 1.53003 * 112.29751 * 96.98953 * 27 26 17
29 29 C 1.48672 * 126.64126 * 179.71605 * 12 10 8
30 30 C 1.39866 * 107.91972 * 359.61122 * 4 3 2
31 31 N 1.30835 * 108.20414 * 0.24226 * 30 4 3
32 32 H 1.08998 * 109.47185 * 270.31310 * 1 2 3
33 33 H 1.09001 * 109.46766 * 30.30854 * 1 2 3
34 34 H 1.09001 * 109.46833 * 150.31084 * 1 2 3
35 35 H 1.07999 * 126.12643 * 359.97438 * 3 2 1
36 36 H 1.09006 * 117.51437 * 145.04727 * 7 5 4
37 37 H 1.08995 * 117.49932 * 0.02562 * 7 5 4
38 38 H 1.08997 * 110.06468 * 92.12728 * 13 12 10
39 39 H 1.09001 * 110.06875 * 330.61259 * 13 12 10
40 40 H 1.09003 * 110.58072 * 19.07603 * 16 14 13
41 41 H 1.08998 * 110.52661 * 256.38059 * 16 14 13
42 42 H 0.97001 * 120.00021 * 180.02562 * 21 20 18
43 43 H 1.08991 * 110.46326 * 160.73908 * 26 17 16
44 44 H 1.08997 * 110.46059 * 283.19814 * 26 17 16
45 45 H 1.09004 * 109.47126 * 61.00836 * 28 27 26
46 46 H 1.08995 * 109.47434 * 181.01207 * 28 27 26
47 47 H 1.09000 * 109.46940 * 301.01298 * 28 27 26
48 48 H 1.09000 * 109.98643 * 29.82179 * 29 12 10
49 49 H 1.08998 * 110.85825 * 267.83596 * 29 12 10
50 50 H 1.07996 * 125.89681 * 180.21600 * 30 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2589 1.0912 0.0000
4 6 3.5437 0.6665 -0.0032
5 6 4.7680 1.5452 -0.0071
6 1 4.6332 2.5374 -0.4378
7 6 6.1252 0.8661 -0.2070
8 6 5.7374 1.4113 1.1689
9 1 5.4894 0.6880 1.9457
10 6 6.4328 2.6613 1.6433
11 8 6.2133 3.7217 1.0972
12 7 7.2985 2.6009 2.6746
13 6 7.6719 1.4006 3.4405
14 6 7.9777 1.8751 4.8705
15 1 7.1709 1.6410 5.5651
16 6 9.3374 1.2911 5.3254
17 7 10.0044 2.4214 6.0168
18 6 10.7251 2.3954 7.1808
19 1 10.6493 1.5464 7.8440
20 6 11.5529 3.4604 7.5084
21 7 11.7913 4.4051 6.6235
22 14 12.3286 3.5528 9.2053
23 1 13.6418 2.8600 9.1876
24 1 12.5246 4.9755 9.5832
25 1 11.4358 2.8965 10.1940
26 6 9.7112 3.5853 5.1452
27 6 8.2298 3.4020 4.7485
28 6 7.2867 4.2215 5.6316
29 6 8.0660 3.7335 3.2562
30 6 3.5346 -0.7322 0.0037
31 7 2.2891 -1.1328 0.0057
32 1 -0.3633 0.0056 1.0276
33 1 -0.3633 0.8872 -0.5186
34 1 -0.3633 -0.8928 -0.5090
35 1 1.9281 2.1193 -0.0004
36 1 6.8833 1.4115 -0.7691
37 1 6.1322 -0.2162 -0.3361
38 1 8.5564 0.9379 3.0028
39 1 6.8445 0.6911 3.4507
40 1 9.9243 0.9713 4.4644
41 1 9.1851 0.4598 6.0138
42 1 12.3701 5.1491 6.8523
43 1 9.8460 4.5166 5.6950
44 1 10.3490 3.5696 4.2614
45 1 7.5203 5.2811 5.5272
46 1 6.2559 4.0448 5.3244
47 1 7.4120 3.9226 6.6723
48 1 7.5070 4.6618 3.1385
49 1 9.0440 3.8229 2.7835
50 1 4.4053 -1.3710 0.0066
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001092034113.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:05
Heat of formation + Delta-G solvation = 107.928853 kcal
Electronic energy + Delta-G solvation = -30052.365691 eV
Core-core repulsion = 26083.229198 eV
Total energy + Delta-G solvation = -3969.136493 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.55266 -40.21111 -38.71849 -36.47519 -34.89679 -33.33004 -32.48954 -31.33898
-30.42818 -29.50337 -27.37048 -26.68073 -25.88837 -25.09610 -23.60013 -23.16566
-22.06759 -21.28876 -20.53242 -20.03190 -18.89952 -18.27313 -17.49698 -16.89782
-16.48360 -15.81131 -15.60545 -15.39054 -14.72662 -14.70630 -14.53979 -14.25346
-13.90924 -13.63088 -13.43844 -13.22976 -13.16992 -12.90760 -12.83398 -12.64414
-12.24247 -12.11422 -12.04696 -11.67743 -11.52538 -11.35942 -11.07057 -10.89695
-10.80757 -10.77591 -10.71945 -10.57025 -10.16086 -10.00923 -9.96991 -9.84610
-9.72113 -9.63604 -9.52385 -8.69589 -8.51202 -8.40837 -6.87422 -5.80808
-3.15521 1.56884 2.20519 2.33980 2.71758 3.15785 3.36769 3.42746
3.44293 3.87745 4.15667 4.44406 4.51803 4.55361 4.67550 4.74593
4.76781 4.86820 4.93374 4.98427 5.00489 5.10271 5.17326 5.26936
5.37481 5.46099 5.54964 5.57564 5.66473 5.69313 5.75755 5.78477
5.86576 5.95600 6.06621 6.10263 6.14066 6.27594 6.29773 6.33582
6.36196 6.50105 6.66992 6.67372 6.71711 6.78263 6.95361 7.27354
7.38941 7.52085 7.70469 7.79434 8.18991 8.34418 9.08424 9.72007
10.50230 11.32921
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.024006 B = 0.002086 C = 0.002048
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1166.095984 B =13419.622620 C =13669.311384
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.102 3.898
2 N -0.378 5.378
3 C 0.065 3.935
4 C -0.205 4.205
5 C -0.041 4.041
6 H 0.122 0.878
7 C -0.142 4.142
8 C -0.177 4.177
9 H 0.122 0.878
10 C 0.558 3.442
11 O -0.551 6.551
12 N -0.611 5.611
13 C 0.109 3.891
14 C -0.109 4.109
15 H 0.083 0.917
16 C 0.132 3.868
17 N -0.593 5.593
18 C -0.225 4.225
19 H 0.076 0.924
20 C -0.005 4.005
21 N -0.914 5.914
22 Si 0.910 3.090
23 H -0.288 1.288
24 H -0.290 1.290
25 H -0.280 1.280
26 C 0.167 3.833
27 C -0.096 4.096
28 C -0.117 4.117
29 C 0.119 3.881
30 C 0.055 3.945
31 N -0.298 5.298
32 H 0.074 0.926
33 H 0.087 0.913
34 H 0.088 0.912
35 H 0.175 0.825
36 H 0.102 0.898
37 H 0.104 0.896
38 H 0.071 0.929
39 H 0.069 0.931
40 H 0.028 0.972
41 H 0.049 0.951
42 H 0.254 0.746
43 H 0.091 0.909
44 H 0.024 0.976
45 H 0.052 0.948
46 H 0.040 0.960
47 H 0.062 0.938
48 H 0.074 0.926
49 H 0.073 0.927
50 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.349 -7.705 -13.721 24.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.039 4.039
2 N -0.160 5.160
3 C -0.081 4.081
4 C -0.217 4.217
5 C -0.060 4.060
6 H 0.140 0.860
7 C -0.180 4.180
8 C -0.199 4.199
9 H 0.140 0.860
10 C 0.347 3.653
11 O -0.430 6.430
12 N -0.343 5.343
13 C -0.014 4.014
14 C -0.130 4.130
15 H 0.101 0.899
16 C 0.005 3.995
17 N -0.316 5.316
18 C -0.353 4.353
19 H 0.093 0.907
20 C -0.202 4.202
21 N -0.560 5.560
22 Si 0.740 3.260
23 H -0.215 1.215
24 H -0.216 1.216
25 H -0.206 1.206
26 C 0.041 3.959
27 C -0.098 4.098
28 C -0.174 4.174
29 C -0.003 4.003
30 C -0.131 4.131
31 N -0.119 5.119
32 H 0.093 0.907
33 H 0.106 0.894
34 H 0.107 0.893
35 H 0.193 0.807
36 H 0.121 0.879
37 H 0.122 0.878
38 H 0.090 0.910
39 H 0.088 0.912
40 H 0.045 0.955
41 H 0.067 0.933
42 H 0.064 0.936
43 H 0.109 0.891
44 H 0.042 0.958
45 H 0.071 0.929
46 H 0.059 0.941
47 H 0.081 0.919
48 H 0.092 0.908
49 H 0.091 0.909
50 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -20.302 -8.013 -13.905 25.879
hybrid contribution 1.018 0.717 0.991 1.592
sum -19.284 -7.296 -12.914 24.328
Atomic orbital electron populations
1.21862 0.74132 1.04489 1.03461 1.48447 1.06670 1.03838 1.57073
1.22288 0.90702 0.93470 1.01652 1.19289 0.93088 0.93118 1.16169
1.20204 0.86965 0.99281 0.99600 0.85962 1.23021 0.98111 1.00923
0.95913 1.22323 1.04889 0.98987 0.93677 0.86041 1.19232 0.78159
0.89197 0.78712 1.90669 1.64468 1.31066 1.56819 1.48930 1.42167
1.11130 1.32081 1.22228 1.00027 0.87386 0.91743 1.23142 0.99864
0.95712 0.94258 0.89863 1.21912 0.90259 0.91935 0.95429 1.45064
1.60392 1.02142 1.24004 1.18953 1.17745 1.04458 0.94168 0.90666
1.24888 0.98450 0.98567 0.98320 1.69881 1.40144 1.13091 1.32892
0.86159 0.79192 0.76950 0.83669 1.21505 1.21590 1.20602 1.21768
0.86436 0.94203 0.93510 1.22530 1.00518 0.94231 0.92563 1.21550
0.96867 0.99132 0.99861 1.22501 0.95539 0.89489 0.92794 1.23766
0.95192 0.94464 0.99714 1.77366 1.01626 1.08308 1.24634 0.90702
0.89416 0.89295 0.80739 0.87915 0.87779 0.91044 0.91225 0.95483
0.93293 0.93565 0.89103 0.95821 0.92858 0.94068 0.91897 0.90771
0.90881 0.80058
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.47 11.47 59.85 0.69 1.16 16
2 N -0.38 -3.37 4.01 -68.16 -0.27 -3.65 16
3 C 0.07 0.57 11.40 -17.22 -0.20 0.37 16
4 C -0.21 -2.01 5.76 -105.05 -0.61 -2.61 16
5 C -0.04 -0.42 5.76 -91.74 -0.53 -0.95 16
6 H 0.12 1.38 7.67 -51.93 -0.40 0.98 16
7 C -0.14 -1.32 9.73 -26.70 -0.26 -1.58 16
8 C -0.18 -2.00 5.26 -91.77 -0.48 -2.48 16
9 H 0.12 1.26 7.02 -51.93 -0.36 0.89 16
10 C 0.56 8.44 7.67 -10.98 -0.08 8.36 16
11 O -0.55 -10.07 16.51 5.55 0.09 -9.98 16
12 N -0.61 -9.32 3.35 -170.45 -0.57 -9.89 16
13 C 0.11 1.49 6.39 -3.28 -0.02 1.47 16
14 C -0.11 -1.78 3.73 -88.09 -0.33 -2.11 16
15 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16
16 C 0.13 2.53 6.78 -2.07 -0.01 2.52 16
17 N -0.59 -14.38 3.37 -168.25 -0.57 -14.95 16
18 C -0.23 -6.03 10.37 -15.06 -0.16 -6.19 16
19 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16
20 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16
21 N -0.91 -26.12 10.89 55.49 0.60 -25.52 16
22 Si 0.91 21.51 29.56 -169.99 -5.03 16.49 16
23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16
25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
26 C 0.17 3.79 5.10 -2.27 -0.01 3.78 16
27 C -0.10 -1.72 1.07 -152.18 -0.16 -1.89 16
28 C -0.12 -2.01 8.57 37.16 0.32 -1.69 16
29 C 0.12 2.01 6.32 -2.46 -0.02 1.99 16
30 C 0.05 0.54 11.35 -17.37 -0.20 0.34 16
31 N -0.30 -3.29 12.58 30.62 0.39 -2.91 16
32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16
33 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16
34 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16
35 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16
36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16
37 H 0.10 0.74 6.98 -51.93 -0.36 0.38 16
38 H 0.07 0.96 7.15 -51.93 -0.37 0.59 16
39 H 0.07 0.79 6.82 -51.93 -0.35 0.43 16
40 H 0.03 0.52 7.22 -51.93 -0.37 0.15 16
41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16
43 H 0.09 2.34 6.24 -51.93 -0.32 2.02 16
44 H 0.02 0.57 7.18 -51.93 -0.37 0.20 16
45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
48 H 0.07 1.28 7.63 -51.93 -0.40 0.88 16
49 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16
50 H 0.18 1.32 7.19 -52.49 -0.38 0.94 16
LS Contribution 399.22 15.07 6.02 6.02
Total: -1.00 -33.55 399.22 -9.32 -42.87
By element:
Atomic # 1 Polarization: 9.07 SS G_CDS: -7.83 Total: 1.24 kcal
Atomic # 6 Polarization: 2.42 SS G_CDS: -2.15 Total: 0.27 kcal
Atomic # 7 Polarization: -56.48 SS G_CDS: -0.42 Total: -56.90 kcal
Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -33.55 -9.32 -42.87 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001092034113.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.795 kcal
(2) G-P(sol) polarization free energy of solvation -33.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.250 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds