Wall clock time and date at job start Wed Apr 1 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99867 * 2 1 4 4 C 1.39028 * 120.00412 * 179.97438 * 2 1 3 5 5 C 1.39125 * 119.64160 * 12.40628 * 4 2 1 6 6 C 1.39488 * 118.93281 * 179.97438 * 5 4 2 7 7 C 1.48167 * 120.88430 * 180.02562 * 6 5 4 8 8 O 1.21512 * 120.00061 * 338.21597 * 7 6 5 9 9 N 1.34777 * 119.99734 * 158.21796 * 7 6 5 10 10 C 1.47197 * 126.70561 * 3.95709 * 9 7 6 11 11 C 1.53750 * 106.42525 * 211.34768 * 10 9 7 12 12 H 1.09002 * 112.28192 * 104.36280 * 11 10 9 13 13 C 1.54449 * 109.01333 * 229.45190 * 11 10 9 14 14 N 1.48331 * 104.32399 * 137.36048 * 13 11 10 15 15 C 1.36935 * 128.19509 * 138.17184 * 14 13 11 16 16 H 1.07998 * 120.00489 * 346.61444 * 15 14 13 17 17 C 1.38819 * 119.99570 * 166.61454 * 15 14 13 18 18 N 1.31613 * 120.00096 * 357.69694 * 17 15 14 19 19 Si 1.86805 * 119.99824 * 177.69244 * 17 15 14 20 20 H 1.48503 * 109.46859 * 60.00109 * 19 17 15 21 21 H 1.48498 * 109.46972 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47202 * 300.00250 * 19 17 15 23 23 C 1.48335 * 103.60566 * 318.19938 * 14 13 11 24 24 C 1.54451 * 104.43702 * 41.73573 * 23 14 13 25 25 C 1.53003 * 112.29520 * 97.05428 * 24 23 14 26 26 C 1.47198 * 126.70137 * 183.93225 * 9 7 6 27 27 C 1.40023 * 118.23353 * 0.27094 * 6 5 4 28 28 C 1.37943 * 119.17359 * 359.43678 * 27 6 5 29 29 N 1.31918 * 121.00463 * 0.57954 * 28 27 6 30 30 H 1.09003 * 109.46777 * 182.61939 * 1 2 3 31 31 H 1.09001 * 109.46984 * 302.61518 * 1 2 3 32 32 H 1.08993 * 109.47195 * 62.61897 * 1 2 3 33 33 H 1.08995 * 109.47282 * 270.00026 * 3 2 1 34 34 H 1.09001 * 109.47009 * 29.99919 * 3 2 1 35 35 H 1.09007 * 109.46778 * 149.99451 * 3 2 1 36 36 H 1.08000 * 120.53498 * 0.02562 * 5 4 2 37 37 H 1.08998 * 110.06543 * 92.11068 * 10 9 7 38 38 H 1.08997 * 110.11267 * 330.61526 * 10 9 7 39 39 H 1.09004 * 110.46121 * 18.65559 * 13 11 10 40 40 H 1.08997 * 110.57863 * 256.12936 * 13 11 10 41 41 H 0.97003 * 119.99751 * 180.02562 * 18 17 15 42 42 H 1.08991 * 110.46276 * 160.51463 * 23 14 13 43 43 H 1.09003 * 110.45723 * 282.96556 * 23 14 13 44 44 H 1.08992 * 109.47441 * 61.01830 * 25 24 23 45 45 H 1.09003 * 109.46940 * 181.01505 * 25 24 23 46 46 H 1.08997 * 109.47270 * 301.01269 * 25 24 23 47 47 H 1.09000 * 110.06545 * 267.89443 * 26 9 7 48 48 H 1.09001 * 110.06597 * 29.35142 * 26 9 7 49 49 H 1.07999 * 120.40942 * 179.72574 * 27 6 5 50 50 H 1.08006 * 119.49535 * 180.27085 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1602 -1.2040 0.0005 5 6 1.4816 -2.3905 -0.2587 6 6 2.1938 -3.5899 -0.2550 7 6 1.5146 -4.8785 -0.5262 8 8 0.3143 -4.9782 -0.3659 9 7 2.2283 -5.9401 -0.9505 10 6 3.6894 -6.0089 -1.1154 11 6 3.9504 -6.9805 -2.2781 12 1 4.2308 -6.4620 -3.1950 13 6 5.0117 -8.0142 -1.8414 14 7 4.4983 -9.3071 -2.3561 15 6 5.1994 -10.3164 -2.9602 16 1 6.2077 -10.1420 -3.3057 17 6 4.6141 -11.5639 -3.1284 18 7 3.4024 -11.7899 -2.6670 19 14 5.5462 -12.9218 -4.0098 20 1 6.8060 -13.2121 -3.2791 21 1 4.7085 -14.1469 -4.0573 22 1 5.8655 -12.4858 -5.3929 23 6 3.0456 -9.2475 -2.0622 24 6 2.6388 -7.8019 -2.4227 25 6 2.0392 -7.7005 -3.8267 26 6 1.6990 -7.2575 -1.3390 27 6 3.5666 -3.5443 0.0169 28 6 4.1642 -2.3246 0.2579 29 7 3.4603 -1.2089 0.2466 30 1 -0.3633 -1.0266 0.0470 31 1 -0.3633 0.5539 0.8656 32 1 -0.3633 0.4726 -0.9125 33 1 2.3791 1.5834 -1.0276 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5140 36 1 0.4206 -2.3830 -0.4604 37 1 4.1515 -6.3852 -0.2028 38 1 4.0863 -5.0227 -1.3560 39 1 5.0924 -8.0417 -0.7547 40 1 5.9785 -7.7829 -2.2886 41 1 2.9935 -12.6617 -2.7842 42 1 2.5022 -9.9618 -2.6806 43 1 2.8624 -9.4427 -1.0056 44 1 1.1391 -8.3126 -3.8825 45 1 1.7860 -6.6619 -4.0396 46 1 2.7654 -8.0547 -4.5584 47 1 1.6937 -7.9270 -0.4788 48 1 0.6896 -7.1525 -1.7369 49 1 4.1511 -4.4522 0.0331 50 1 5.2236 -2.2829 0.4639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092064032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:02 Heat of formation + Delta-G solvation = 74.675369 kcal Electronic energy + Delta-G solvation = -30641.210491 eV Core-core repulsion = 26670.632019 eV Total energy + Delta-G solvation = -3970.578472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.96863 -39.90837 -38.27674 -36.72380 -35.10954 -33.09853 -32.30022 -31.42705 -30.58267 -29.60937 -28.59914 -26.75144 -26.06801 -25.65319 -25.07318 -23.71973 -22.71490 -21.72949 -20.60736 -19.67834 -18.55082 -17.62748 -16.99186 -16.77812 -16.37453 -15.80028 -15.54829 -15.49396 -15.31352 -14.72434 -14.41593 -14.37486 -14.25484 -13.90112 -13.60797 -13.51221 -13.14432 -12.84832 -12.79304 -12.47797 -12.45732 -12.37995 -12.21621 -11.91611 -11.68187 -11.53534 -11.20488 -10.94188 -10.81256 -10.74921 -10.40924 -10.23120 -10.02444 -10.01936 -9.97362 -9.90851 -9.79501 -9.56587 -9.46965 -8.75229 -8.54066 -7.80593 -6.91619 -5.78574 -3.17372 0.72254 1.10876 2.59036 2.88361 3.03454 3.36529 3.41261 3.42307 3.75985 4.24842 4.34638 4.42944 4.67721 4.81351 4.85496 4.91971 4.95021 5.00391 5.03320 5.15132 5.19717 5.32389 5.35823 5.40890 5.49131 5.53896 5.54938 5.59069 5.63946 5.68023 5.70578 5.91882 5.99113 6.03123 6.09973 6.17072 6.21660 6.29843 6.34266 6.46551 6.61617 6.63096 6.71013 6.75981 6.92038 7.06557 7.26185 7.52051 7.61411 7.71757 7.88100 8.13992 8.22071 9.08063 9.70764 10.46778 11.31540 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.002338 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.111979 B =11973.259412 C =12565.596504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.620 5.620 3 C 0.100 3.900 4 C 0.397 3.603 5 C -0.184 4.184 6 C -0.035 4.035 7 C 0.570 3.430 8 O -0.539 6.539 9 N -0.601 5.601 10 C 0.089 3.911 11 C -0.111 4.111 12 H 0.085 0.915 13 C 0.132 3.868 14 N -0.594 5.594 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.913 3.087 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.158 3.842 24 C -0.094 4.094 25 C -0.116 4.116 26 C 0.118 3.882 27 C -0.221 4.221 28 C 0.145 3.855 29 N -0.531 5.531 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.027 0.973 40 H 0.049 0.951 41 H 0.255 0.745 42 H 0.108 0.892 43 H 0.020 0.980 44 H 0.053 0.947 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.156 0.844 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 22.453 4.704 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.336 5.336 3 C -0.043 4.043 4 C 0.163 3.837 5 C -0.210 4.210 6 C -0.046 4.046 7 C 0.359 3.641 8 O -0.417 6.417 9 N -0.332 5.332 10 C -0.034 4.034 11 C -0.131 4.131 12 H 0.104 0.896 13 C 0.005 3.995 14 N -0.316 5.316 15 C -0.351 4.351 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.564 5.564 19 Si 0.743 3.257 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.032 3.968 24 C -0.097 4.097 25 C -0.173 4.173 26 C -0.004 4.004 27 C -0.243 4.243 28 C -0.012 4.012 29 N -0.249 5.249 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.161 0.839 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.126 0.874 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.174 0.826 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.766 23.115 4.907 23.792 hybrid contribution 0.084 -1.444 -0.517 1.536 sum -2.682 21.671 4.389 22.274 Atomic orbital electron populations 1.21792 0.78320 1.03637 1.01506 1.46130 1.05104 1.02853 1.79483 1.21544 0.97750 0.83843 1.01179 1.18172 0.88511 0.85756 0.91259 1.21508 1.01672 0.90655 1.07122 1.20022 0.93870 0.93188 0.97557 1.17840 0.86075 0.82503 0.77702 1.90761 1.14104 1.83988 1.52890 1.48511 1.08463 1.12443 1.63796 1.22859 0.80399 1.00767 0.99356 1.23183 0.97352 0.95684 0.96930 0.89649 1.21861 0.94698 0.86861 0.96125 1.45037 1.03472 1.15292 1.67820 1.18954 0.97465 0.88334 1.30341 0.90552 1.24867 0.97247 0.97141 1.01053 1.69757 1.14195 1.22465 1.50008 0.86184 0.78766 0.81360 0.79345 1.21088 1.21563 1.21118 1.22007 0.86090 0.90438 0.98286 1.22543 0.92990 0.99811 0.94367 1.21533 1.00608 0.99728 0.95457 1.22225 0.98332 0.82015 0.97820 1.22777 0.94567 1.01050 1.05915 1.22408 0.99472 0.86456 0.92845 1.66994 1.06495 1.32138 1.19265 0.90054 0.92141 0.92309 0.93586 0.91942 0.90084 0.83932 0.90503 0.89443 0.95493 0.93231 0.93475 0.87424 0.96198 0.92748 0.94167 0.91805 0.90824 0.90619 0.82637 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.55 59.85 0.63 1.27 16 2 N -0.62 -5.93 3.39 -189.68 -0.64 -6.58 16 3 C 0.10 0.75 10.60 59.85 0.63 1.39 16 4 C 0.40 4.70 7.32 -155.07 -1.14 3.56 16 5 C -0.18 -2.33 8.81 -38.79 -0.34 -2.67 16 6 C -0.04 -0.47 5.81 -104.68 -0.61 -1.08 16 7 C 0.57 9.08 7.76 -12.18 -0.09 8.99 16 8 O -0.54 -10.13 16.90 5.35 0.09 -10.04 16 9 N -0.60 -9.18 3.32 -172.84 -0.57 -9.76 16 10 C 0.09 1.18 4.75 -3.27 -0.02 1.16 16 11 C -0.11 -1.76 3.73 -88.18 -0.33 -2.09 16 12 H 0.09 1.32 7.95 -51.93 -0.41 0.90 16 13 C 0.13 2.46 6.76 -2.27 -0.02 2.44 16 14 N -0.59 -14.14 3.38 -168.48 -0.57 -14.71 16 15 C -0.22 -5.88 10.40 -15.06 -0.16 -6.04 16 16 H 0.08 1.95 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 18 N -0.92 -25.81 10.51 55.49 0.58 -25.23 16 19 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.16 3.54 5.25 -2.27 -0.01 3.53 16 24 C -0.09 -1.68 1.08 -152.23 -0.16 -1.84 16 25 C -0.12 -1.98 8.61 37.16 0.32 -1.66 16 26 C 0.12 1.97 6.19 -3.44 -0.02 1.95 16 27 C -0.22 -2.44 8.12 -39.02 -0.32 -2.76 16 28 C 0.15 1.48 11.16 -17.62 -0.20 1.28 16 29 N -0.53 -6.24 9.05 -12.48 -0.11 -6.36 16 30 H 0.08 0.61 5.48 -51.93 -0.28 0.33 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 35 H 0.08 0.68 7.23 -51.92 -0.38 0.31 16 36 H 0.14 1.73 5.81 -52.49 -0.30 1.43 16 37 H 0.08 0.96 6.81 -51.93 -0.35 0.61 16 38 H 0.09 0.98 5.24 -51.93 -0.27 0.71 16 39 H 0.03 0.50 7.17 -51.93 -0.37 0.12 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 42 H 0.11 2.76 5.78 -51.93 -0.30 2.46 16 43 H 0.02 0.47 7.17 -51.93 -0.37 0.10 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.07 1.27 7.11 -51.93 -0.37 0.90 16 48 H 0.08 1.28 7.66 -51.93 -0.40 0.89 16 49 H 0.16 1.52 4.41 -52.49 -0.23 1.28 16 50 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -31.94 386.91 -9.73 -41.67 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.39 Total: 1.72 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -1.92 Total: 7.16 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -1.32 Total: -62.63 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.94 -9.73 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092064032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.343 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds