Wall clock time and date at job start Wed Apr 1 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99867 * 2 1 4 4 C 1.39028 * 120.00412 * 179.97438 * 2 1 3 5 5 C 1.39125 * 119.64160 * 12.40628 * 4 2 1 6 6 C 1.39488 * 118.93281 * 179.97438 * 5 4 2 7 7 C 1.48167 * 120.88430 * 180.02562 * 6 5 4 8 8 O 1.21512 * 120.00061 * 338.21597 * 7 6 5 9 9 N 1.34777 * 119.99734 * 158.21796 * 7 6 5 10 10 C 1.47197 * 126.70561 * 3.95709 * 9 7 6 11 11 C 1.53750 * 106.42525 * 211.34768 * 10 9 7 12 12 H 1.09002 * 112.28192 * 104.36280 * 11 10 9 13 13 C 1.54449 * 109.01333 * 229.45190 * 11 10 9 14 14 N 1.48331 * 104.32399 * 137.36048 * 13 11 10 15 15 C 1.36935 * 128.19509 * 138.17184 * 14 13 11 16 16 H 1.07998 * 120.00489 * 346.61444 * 15 14 13 17 17 C 1.38819 * 119.99570 * 166.61454 * 15 14 13 18 18 N 1.31613 * 120.00096 * 357.69694 * 17 15 14 19 19 Si 1.86805 * 119.99824 * 177.69244 * 17 15 14 20 20 H 1.48503 * 109.46859 * 60.00109 * 19 17 15 21 21 H 1.48498 * 109.46972 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47202 * 300.00250 * 19 17 15 23 23 C 1.48335 * 103.60566 * 318.19938 * 14 13 11 24 24 C 1.54451 * 104.43702 * 41.73573 * 23 14 13 25 25 C 1.53003 * 112.29520 * 97.05428 * 24 23 14 26 26 C 1.47198 * 126.70137 * 183.93225 * 9 7 6 27 27 C 1.40023 * 118.23353 * 0.27094 * 6 5 4 28 28 C 1.37943 * 119.17359 * 359.43678 * 27 6 5 29 29 N 1.31918 * 121.00463 * 0.57954 * 28 27 6 30 30 H 1.09003 * 109.46777 * 182.61939 * 1 2 3 31 31 H 1.09001 * 109.46984 * 302.61518 * 1 2 3 32 32 H 1.08993 * 109.47195 * 62.61897 * 1 2 3 33 33 H 1.08995 * 109.47282 * 270.00026 * 3 2 1 34 34 H 1.09001 * 109.47009 * 29.99919 * 3 2 1 35 35 H 1.09007 * 109.46778 * 149.99451 * 3 2 1 36 36 H 1.08000 * 120.53498 * 0.02562 * 5 4 2 37 37 H 1.08998 * 110.06543 * 92.11068 * 10 9 7 38 38 H 1.08997 * 110.11267 * 330.61526 * 10 9 7 39 39 H 1.09004 * 110.46121 * 18.65559 * 13 11 10 40 40 H 1.08997 * 110.57863 * 256.12936 * 13 11 10 41 41 H 0.97003 * 119.99751 * 180.02562 * 18 17 15 42 42 H 1.08991 * 110.46276 * 160.51463 * 23 14 13 43 43 H 1.09003 * 110.45723 * 282.96556 * 23 14 13 44 44 H 1.08992 * 109.47441 * 61.01830 * 25 24 23 45 45 H 1.09003 * 109.46940 * 181.01505 * 25 24 23 46 46 H 1.08997 * 109.47270 * 301.01269 * 25 24 23 47 47 H 1.09000 * 110.06545 * 267.89443 * 26 9 7 48 48 H 1.09001 * 110.06597 * 29.35142 * 26 9 7 49 49 H 1.07999 * 120.40942 * 179.72574 * 27 6 5 50 50 H 1.08006 * 119.49535 * 180.27085 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1602 -1.2040 0.0005 5 6 1.4816 -2.3905 -0.2587 6 6 2.1938 -3.5899 -0.2550 7 6 1.5146 -4.8785 -0.5262 8 8 0.3143 -4.9782 -0.3659 9 7 2.2283 -5.9401 -0.9505 10 6 3.6894 -6.0089 -1.1154 11 6 3.9504 -6.9805 -2.2781 12 1 4.2308 -6.4620 -3.1950 13 6 5.0117 -8.0142 -1.8414 14 7 4.4983 -9.3071 -2.3561 15 6 5.1994 -10.3164 -2.9602 16 1 6.2077 -10.1420 -3.3057 17 6 4.6141 -11.5639 -3.1284 18 7 3.4024 -11.7899 -2.6670 19 14 5.5462 -12.9218 -4.0098 20 1 6.8060 -13.2121 -3.2791 21 1 4.7085 -14.1469 -4.0573 22 1 5.8655 -12.4858 -5.3929 23 6 3.0456 -9.2475 -2.0622 24 6 2.6388 -7.8019 -2.4227 25 6 2.0392 -7.7005 -3.8267 26 6 1.6990 -7.2575 -1.3390 27 6 3.5666 -3.5443 0.0169 28 6 4.1642 -2.3246 0.2579 29 7 3.4603 -1.2089 0.2466 30 1 -0.3633 -1.0266 0.0470 31 1 -0.3633 0.5539 0.8656 32 1 -0.3633 0.4726 -0.9125 33 1 2.3791 1.5834 -1.0276 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5140 36 1 0.4206 -2.3830 -0.4604 37 1 4.1515 -6.3852 -0.2028 38 1 4.0863 -5.0227 -1.3560 39 1 5.0924 -8.0417 -0.7547 40 1 5.9785 -7.7829 -2.2886 41 1 2.9935 -12.6617 -2.7842 42 1 2.5022 -9.9618 -2.6806 43 1 2.8624 -9.4427 -1.0056 44 1 1.1391 -8.3126 -3.8825 45 1 1.7860 -6.6619 -4.0396 46 1 2.7654 -8.0547 -4.5584 47 1 1.6937 -7.9270 -0.4788 48 1 0.6896 -7.1525 -1.7369 49 1 4.1511 -4.4522 0.0331 50 1 5.2236 -2.2829 0.4639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092064032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:01 Heat of formation + Delta-G solvation = 56.183027 kcal Electronic energy + Delta-G solvation = -30642.012380 eV Core-core repulsion = 26670.632019 eV Total energy + Delta-G solvation = -3971.380361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05354 -41.02024 -39.60157 -37.47152 -36.64401 -34.48356 -33.65578 -32.83762 -31.45148 -31.17284 -29.23162 -28.13469 -27.65536 -26.85089 -26.21125 -24.89218 -23.87142 -22.78273 -22.14356 -20.80161 -19.95632 -18.91676 -18.39231 -17.94471 -17.36846 -16.93549 -16.60080 -16.48189 -16.44577 -16.23195 -15.81616 -15.43615 -15.26733 -15.16240 -14.87372 -14.80864 -14.31858 -14.13701 -13.85110 -13.63811 -13.36071 -13.27728 -13.24295 -13.13613 -13.00564 -12.90892 -12.71785 -12.61116 -12.38213 -12.25490 -11.96287 -11.70640 -11.53935 -11.46695 -11.37069 -11.17532 -10.98243 -10.79440 -10.71414 -10.41090 -9.81231 -8.83690 -8.54024 -7.80756 -5.20246 -0.23924 0.28661 1.49746 1.51570 1.57854 1.65903 1.80790 2.03046 2.52345 2.87929 3.19896 3.35595 3.49504 3.55197 3.62205 3.92537 3.94599 3.96603 4.06656 4.12242 4.19295 4.26821 4.37557 4.39829 4.45294 4.52390 4.53507 4.62450 4.68829 4.71992 4.77238 4.79869 4.85860 4.87788 4.91115 4.94970 5.01103 5.01998 5.13789 5.21795 5.24194 5.28955 5.46900 5.49534 5.51517 5.57247 5.81306 5.96848 6.29709 6.30930 6.40717 6.91343 7.07511 7.07656 7.75839 8.53576 9.28136 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.002338 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.111979 B =11973.259412 C =12565.596504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.098 3.902 4 C 0.390 3.610 5 C -0.198 4.198 6 C -0.050 4.050 7 C 0.570 3.430 8 O -0.577 6.577 9 N -0.599 5.599 10 C 0.094 3.906 11 C -0.099 4.099 12 H 0.100 0.900 13 C 0.129 3.871 14 N -0.619 5.619 15 C -0.227 4.227 16 H 0.084 0.916 17 C -0.065 4.065 18 N -0.948 5.948 19 Si 0.975 3.025 20 H -0.277 1.277 21 H -0.299 1.299 22 H -0.278 1.278 23 C 0.165 3.835 24 C -0.086 4.086 25 C -0.109 4.109 26 C 0.124 3.876 27 C -0.219 4.219 28 C 0.152 3.848 29 N -0.541 5.541 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.247 0.753 42 H 0.071 0.929 43 H -0.001 1.001 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.172 0.828 50 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 25.263 4.836 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.338 5.338 3 C -0.044 4.044 4 C 0.155 3.845 5 C -0.224 4.224 6 C -0.061 4.061 7 C 0.360 3.640 8 O -0.457 6.457 9 N -0.330 5.330 10 C -0.027 4.027 11 C -0.120 4.120 12 H 0.118 0.882 13 C 0.004 3.996 14 N -0.342 5.342 15 C -0.356 4.356 16 H 0.101 0.899 17 C -0.258 4.258 18 N -0.597 5.597 19 Si 0.803 3.197 20 H -0.204 1.204 21 H -0.225 1.225 22 H -0.204 1.204 23 C 0.038 3.962 24 C -0.089 4.089 25 C -0.166 4.166 26 C 0.002 3.998 27 C -0.241 4.241 28 C -0.005 4.005 29 N -0.260 5.260 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.017 0.983 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.189 0.811 50 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.957 25.990 5.041 26.491 hybrid contribution -0.467 -2.226 -0.511 2.331 sum -1.424 23.764 4.530 24.234 Atomic orbital electron populations 1.21938 0.77165 1.03520 1.02995 1.46440 1.06047 1.02801 1.78561 1.21647 0.97651 0.83470 1.01623 1.18347 0.88763 0.86281 0.91072 1.21527 1.01683 0.91041 1.08127 1.19895 0.94998 0.91831 0.99340 1.18269 0.85708 0.83194 0.76808 1.90736 1.15847 1.84640 1.54526 1.48487 1.09305 1.11629 1.63541 1.22976 0.79195 1.01737 0.98819 1.23091 0.94989 0.95267 0.98636 0.88219 1.22067 0.96008 0.85036 0.96507 1.45313 1.04226 1.16543 1.68144 1.19335 0.97756 0.89045 1.29492 0.89858 1.25634 0.98149 0.99420 1.02619 1.69987 1.15616 1.22252 1.51803 0.85209 0.77513 0.78391 0.78552 1.20354 1.22522 1.20375 1.21758 0.85697 0.92520 0.96201 1.22330 0.94507 0.97133 0.94937 1.21453 0.99861 1.00830 0.94485 1.21978 0.97893 0.82913 0.97064 1.22900 0.93436 1.02120 1.05666 1.23007 1.00884 0.85577 0.91022 1.67118 1.06430 1.32865 1.19558 0.91020 0.90439 0.90918 0.93212 0.89692 0.90966 0.84396 0.89114 0.86259 0.94641 0.91931 0.94407 0.91094 0.98299 0.93255 0.92032 0.93391 0.91850 0.91171 0.81113 0.78549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.55 127.77 1.35 2.42 16 2 N -0.62 -10.75 3.39 -754.03 -2.56 -13.31 16 3 C 0.10 1.25 10.60 127.77 1.35 2.61 16 4 C 0.39 8.54 7.32 133.08 0.97 9.52 16 5 C -0.20 -4.81 8.81 22.78 0.20 -4.61 16 6 C -0.05 -1.25 5.81 -19.90 -0.12 -1.37 16 7 C 0.57 17.65 7.76 86.88 0.67 18.32 16 8 O -0.58 -21.86 16.90 -3.75 -0.06 -21.92 16 9 N -0.60 -17.45 3.32 -819.04 -2.72 -20.17 16 10 C 0.09 2.21 4.75 86.50 0.41 2.62 16 11 C -0.10 -2.94 3.73 -9.21 -0.03 -2.97 16 12 H 0.10 2.73 7.95 -2.39 -0.02 2.72 16 13 C 0.13 4.60 6.76 86.52 0.58 5.18 16 14 N -0.62 -29.57 3.38 -686.94 -2.32 -31.90 16 15 C -0.23 -12.04 10.40 84.04 0.87 -11.17 16 16 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 17 C -0.07 -3.57 5.47 84.86 0.46 -3.11 16 18 N -0.95 -55.33 10.51 21.65 0.23 -55.10 16 19 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 C 0.16 7.60 5.25 86.52 0.45 8.05 16 24 C -0.09 -3.05 1.08 -50.71 -0.05 -3.10 16 25 C -0.11 -3.70 8.61 71.98 0.62 -3.08 16 26 C 0.12 4.16 6.19 86.39 0.54 4.69 16 27 C -0.22 -4.15 8.12 22.63 0.18 -3.96 16 28 C 0.15 2.56 11.16 84.61 0.94 3.50 16 29 N -0.54 -11.30 9.05 -193.40 -1.75 -13.05 16 30 H 0.07 1.04 5.48 -2.39 -0.01 1.03 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.69 8.07 -2.39 -0.02 0.67 16 35 H 0.07 1.06 7.23 -2.38 -0.02 1.04 16 36 H 0.14 3.37 5.81 -2.91 -0.02 3.35 16 37 H 0.09 1.95 6.81 -2.39 -0.02 1.93 16 38 H 0.12 2.13 5.24 -2.39 -0.01 2.12 16 39 H 0.04 1.22 7.17 -2.39 -0.02 1.20 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.07 3.82 5.78 -2.39 -0.01 3.81 16 43 H 0.00 -0.04 7.17 -2.39 -0.02 -0.06 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 2.25 7.11 -2.39 -0.02 2.23 16 48 H 0.07 2.42 7.66 -2.39 -0.02 2.40 16 49 H 0.17 2.61 4.41 -2.91 -0.01 2.59 16 50 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -71.31 386.91 3.22 -68.09 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.96 Total: 17.35 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 9.42 Total: 23.55 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -9.12 Total: -133.53 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.06 Total: -21.92 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.31 3.22 -68.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092064032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.273 kcal (2) G-P(sol) polarization free energy of solvation -71.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds